Wall clock time and date at job start Sat Apr 11 2020 05:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46711 * 2 1 4 4 H 1.08999 * 109.68101 * 298.43813 * 3 2 1 5 5 C 1.53297 * 109.68364 * 58.95785 * 3 2 1 6 6 O 1.42973 * 109.21553 * 171.98435 * 5 3 2 7 7 C 1.42964 * 114.19981 * 297.47293 * 6 5 3 8 8 C 1.52992 * 109.51500 * 302.64175 * 7 6 5 9 9 C 1.52998 * 109.54939 * 182.51511 * 7 6 5 10 10 C 1.53293 * 109.22160 * 62.57017 * 7 6 5 11 11 N 1.47155 * 109.68006 * 177.92010 * 3 2 1 12 12 C 1.34774 * 120.98425 * 9.76708 * 11 3 2 13 13 O 1.21352 * 119.99722 * 2.80893 * 12 11 3 14 14 C 1.49447 * 120.00326 * 182.81404 * 12 11 3 15 15 O 1.21347 * 119.99857 * 353.68824 * 14 12 11 16 16 N 1.34774 * 120.00325 * 173.69213 * 14 12 11 17 17 C 1.46499 * 120.00090 * 185.01206 * 16 14 12 18 18 C 1.53008 * 109.46875 * 184.99358 * 17 16 14 19 19 C 1.50700 * 115.54596 * 279.37190 * 18 17 16 20 20 H 1.08001 * 119.99769 * 95.09008 * 19 18 17 21 21 C 1.37879 * 120.00159 * 275.07779 * 19 18 17 22 22 N 1.31510 * 120.00031 * 5.05795 * 21 19 18 23 23 Si 1.86801 * 119.99805 * 185.05599 * 21 19 18 24 24 H 1.48496 * 109.47294 * 60.00342 * 23 21 19 25 25 H 1.48500 * 109.46903 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47111 * 299.99961 * 23 21 19 27 27 C 1.53000 * 117.49741 * 133.66839 * 18 17 16 28 28 C 1.52998 * 117.49949 * 65.04469 * 18 17 16 29 29 H 1.09000 * 109.46705 * 174.95939 * 1 2 3 30 30 H 1.08998 * 109.47163 * 54.96309 * 1 2 3 31 31 H 1.08994 * 109.47089 * 294.95964 * 1 2 3 32 32 H 1.08999 * 109.47340 * 119.99861 * 2 1 3 33 33 H 1.08997 * 109.47248 * 240.00228 * 2 1 3 34 34 H 1.09000 * 109.51097 * 291.95330 * 5 3 2 35 35 H 1.09003 * 109.50891 * 52.10044 * 5 3 2 36 36 H 1.09004 * 109.46889 * 179.74571 * 8 7 6 37 37 H 1.08995 * 109.47432 * 299.74637 * 8 7 6 38 38 H 1.08998 * 109.47020 * 59.74951 * 8 7 6 39 39 H 1.09000 * 109.47260 * 300.23200 * 9 7 6 40 40 H 1.08994 * 109.47639 * 60.23333 * 9 7 6 41 41 H 1.09002 * 109.47122 * 180.23505 * 9 7 6 42 42 H 1.09000 * 109.68391 * 187.97099 * 10 7 6 43 43 H 1.09007 * 109.68474 * 67.41426 * 10 7 6 44 44 H 0.97008 * 119.99661 * 5.01607 * 16 14 12 45 45 H 1.08993 * 109.47220 * 304.99447 * 17 16 14 46 46 H 1.08999 * 109.46857 * 64.99482 * 17 16 14 47 47 H 0.96994 * 120.00391 * 184.99597 * 22 21 19 48 48 H 1.08999 * 117.49777 * 359.97438 * 27 18 17 49 49 H 1.08998 * 117.50110 * 145.01669 * 27 18 17 50 50 H 1.08991 * 117.49745 * 214.97473 * 28 18 17 51 51 H 1.09000 * 117.49863 * 359.97438 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.7014 1.9515 -0.9025 5 6 1.5102 2.1774 1.2367 6 8 2.1381 3.4587 1.3276 7 6 3.5562 3.4054 1.5015 8 6 3.8869 2.5963 2.7572 9 6 4.1077 4.8249 1.6482 10 6 4.1898 2.7338 0.2779 11 7 3.5106 1.4483 0.0503 12 6 4.2147 0.3101 -0.1080 13 8 3.6390 -0.7313 -0.3459 14 6 5.7044 0.3304 0.0097 15 8 6.2889 1.3866 0.1333 16 7 6.3987 -0.8243 -0.0216 17 6 7.8463 -0.8150 0.2034 18 6 8.4042 -2.2240 -0.0074 19 6 8.2377 -3.1695 1.1542 20 1 7.3937 -3.8426 1.1859 21 6 9.1629 -3.1753 2.1764 22 7 10.1350 -2.2896 2.1887 23 14 9.0357 -4.4414 3.5440 24 1 9.1313 -5.8059 2.9659 25 1 10.1415 -4.2356 4.5136 26 1 7.7329 -4.2889 4.2402 27 6 9.6695 -2.3630 -0.8563 28 6 8.3190 -2.8140 -1.4165 29 1 -0.3633 -1.0237 -0.0903 30 1 -0.3633 0.5900 -0.8414 31 1 -0.3633 0.4336 0.9316 32 1 1.8934 -0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 0.4312 2.3053 1.1498 35 1 1.7380 1.5967 2.1306 36 1 4.9684 2.5523 2.8866 37 1 3.4361 3.0744 3.6268 38 1 3.4921 1.5857 2.6527 39 1 3.8701 5.4013 0.7541 40 1 3.6568 5.3019 2.5184 41 1 5.1893 4.7830 1.7766 42 1 5.2502 2.5611 0.4619 43 1 4.0678 3.3733 -0.5963 44 1 5.9399 -1.6616 -0.1932 45 1 8.3187 -0.1282 -0.4989 46 1 8.0533 -0.4910 1.2234 47 1 10.8269 -2.3382 2.8666 48 1 10.1042 -1.4508 -1.2650 49 1 10.3819 -3.1384 -0.5747 50 1 8.1430 -3.8861 -1.5033 51 1 7.8651 -2.1986 -2.1932 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326674767.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:28:03 Heat of formation + Delta-G solvation = -63.756052 kcal Electronic energy + Delta-G solvation = -31521.714626 eV Core-core repulsion = 27423.299176 eV Total energy + Delta-G solvation = -4098.415450 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.25829 -39.40352 -38.31330 -36.90039 -35.47932 -34.62881 -33.37547 -32.42504 -32.02071 -28.39947 -27.56614 -27.11893 -26.42672 -25.57114 -24.72305 -22.70267 -21.56397 -21.16777 -20.01862 -19.78410 -19.13352 -17.62313 -16.88183 -16.51034 -16.24534 -15.90847 -15.62989 -15.10426 -15.04265 -14.75904 -14.69045 -14.50609 -14.08749 -13.87631 -13.61119 -13.33477 -13.15765 -13.04519 -12.73872 -12.58178 -12.32503 -12.12436 -12.01536 -11.93110 -11.75396 -11.65121 -11.52663 -11.43662 -11.09010 -10.95692 -10.85282 -10.66741 -10.58092 -10.33354 -10.20165 -10.14390 -9.71406 -9.08889 -8.72720 -8.58901 -8.54582 -8.45496 -8.26124 -6.14572 -4.23127 1.65403 2.43724 3.25067 3.30701 3.33143 3.44630 3.52794 3.70501 4.32232 4.47505 4.58995 4.71201 4.77925 4.82240 4.85944 4.92640 5.14315 5.17313 5.24964 5.29535 5.35059 5.42534 5.51727 5.54436 5.58678 5.69591 5.70351 5.76530 5.88598 5.89951 5.97208 6.03462 6.08427 6.13305 6.18133 6.24821 6.31311 6.45527 6.50945 6.60962 6.68949 6.97788 7.00566 7.08118 7.11440 7.31349 7.38450 7.67513 7.76433 8.04301 8.26649 8.40095 8.79240 9.44810 10.93776 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.013083 B = 0.003224 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.650774 B = 8681.706546 C = 8989.631846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.121 4.121 3 C 0.110 3.890 4 H 0.081 0.919 5 C 0.050 3.950 6 O -0.376 6.376 7 C 0.099 3.901 8 C -0.176 4.176 9 C -0.134 4.134 10 C 0.030 3.970 11 N -0.583 5.583 12 C 0.511 3.489 13 O -0.515 6.515 14 C 0.497 3.503 15 O -0.528 6.528 16 N -0.665 5.665 17 C 0.157 3.843 18 C 0.025 3.975 19 C -0.501 4.501 20 H 0.061 0.939 21 C 0.074 3.926 22 N -0.875 5.875 23 Si 0.890 3.110 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.276 1.276 27 C -0.144 4.144 28 C -0.208 4.208 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.070 0.930 33 H 0.100 0.900 34 H 0.104 0.896 35 H 0.060 0.940 36 H 0.074 0.926 37 H 0.063 0.937 38 H 0.058 0.942 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.170 0.830 43 H 0.071 0.929 44 H 0.412 0.588 45 H 0.050 0.950 46 H 0.080 0.920 47 H 0.263 0.737 48 H 0.066 0.934 49 H 0.085 0.915 50 H 0.080 0.920 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.697 10.468 -2.834 18.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.158 4.158 3 C 0.007 3.993 4 H 0.099 0.901 5 C -0.028 4.028 6 O -0.295 6.295 7 C 0.059 3.941 8 C -0.233 4.233 9 C -0.192 4.192 10 C -0.091 4.091 11 N -0.317 5.317 12 C 0.294 3.706 13 O -0.391 6.391 14 C 0.277 3.723 15 O -0.409 6.409 16 N -0.314 5.314 17 C 0.036 3.964 18 C 0.024 3.976 19 C -0.538 4.538 20 H 0.079 0.921 21 C -0.130 4.130 22 N -0.511 5.511 23 Si 0.717 3.283 24 H -0.202 1.202 25 H -0.212 1.212 26 H -0.202 1.202 27 C -0.182 4.182 28 C -0.246 4.246 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.118 0.882 34 H 0.122 0.878 35 H 0.078 0.922 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.096 0.904 42 H 0.186 0.814 43 H 0.089 0.911 44 H 0.249 0.751 45 H 0.068 0.932 46 H 0.098 0.902 47 H 0.072 0.928 48 H 0.084 0.916 49 H 0.103 0.897 50 H 0.099 0.901 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.511 10.886 -2.713 18.342 hybrid contribution -0.145 -1.230 0.709 1.427 sum -14.656 9.656 -2.004 17.665 Atomic orbital electron populations 1.21948 0.96337 1.02056 1.01314 1.22094 0.94308 0.93619 1.05782 1.22158 0.79162 0.98666 0.99305 0.90100 1.23101 0.97810 0.85190 0.96682 1.87967 1.20109 1.27832 1.93574 1.21937 0.81058 0.96759 0.94360 1.22365 1.03204 1.00402 0.97358 1.21696 1.01232 0.93437 1.02823 1.24025 1.04297 0.83222 0.97552 1.48001 1.06187 1.07892 1.69600 1.20360 0.88648 0.83660 0.77912 1.90755 1.70143 1.31140 1.47027 1.20084 0.87766 0.85196 0.79219 1.90241 1.70138 1.29128 1.51418 1.46043 1.10595 1.08664 1.66078 1.21371 0.75645 0.98106 1.01328 1.19036 0.97621 0.91620 0.89347 1.20374 1.10463 1.19816 1.03182 0.92094 1.24966 0.95575 0.95099 0.97380 1.69983 1.12864 1.33129 1.35125 0.86697 0.77764 0.82001 0.81806 1.20170 1.21222 1.20159 1.22517 0.90846 1.01089 1.03751 1.22995 1.03113 1.00033 0.98448 0.92211 0.92810 0.93025 0.91088 0.88161 0.87766 0.92207 0.90726 0.91834 0.92337 0.91735 0.91618 0.90371 0.81386 0.91107 0.75139 0.93179 0.90192 0.92752 0.91577 0.89670 0.90100 0.91539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.40 9.40 37.16 0.35 -1.05 16 2 C -0.12 -1.41 3.92 -26.73 -0.10 -1.51 16 3 C 0.11 1.28 3.22 -67.42 -0.22 1.06 16 4 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 5 C 0.05 0.53 5.27 37.31 0.20 0.72 16 6 O -0.38 -4.51 10.23 -35.23 -0.36 -4.87 16 7 C 0.10 1.15 1.11 -90.47 -0.10 1.05 16 8 C -0.18 -2.10 8.09 37.15 0.30 -1.80 16 9 C -0.13 -1.29 8.85 37.16 0.33 -0.96 16 10 C 0.03 0.39 5.08 -3.53 -0.02 0.37 16 11 N -0.58 -7.99 2.54 -165.24 -0.42 -8.41 16 12 C 0.51 8.16 7.63 -11.59 -0.09 8.07 16 13 O -0.51 -8.65 12.17 5.50 0.07 -8.59 16 14 C 0.50 8.79 7.81 -11.59 -0.09 8.70 16 15 O -0.53 -9.75 13.02 5.50 0.07 -9.68 16 16 N -0.67 -12.51 5.50 -60.73 -0.33 -12.84 16 17 C 0.16 3.36 5.59 -4.04 -0.02 3.34 16 18 C 0.02 0.56 1.34 -155.66 -0.21 0.35 16 19 C -0.50 -12.71 8.82 -34.44 -0.30 -13.02 16 20 H 0.06 1.55 7.82 -52.49 -0.41 1.14 16 21 C 0.07 1.92 5.40 -17.82 -0.10 1.82 16 22 N -0.88 -23.51 12.90 55.43 0.71 -22.80 16 23 Si 0.89 20.30 29.54 -169.99 -5.02 15.28 16 24 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 25 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 27 C -0.14 -3.16 9.36 -26.73 -0.25 -3.41 16 28 C -0.21 -4.20 9.91 -26.73 -0.26 -4.47 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.05 0.40 6.90 -51.93 -0.36 0.04 16 32 H 0.07 0.95 7.38 -51.93 -0.38 0.57 16 33 H 0.10 1.37 6.17 -51.93 -0.32 1.05 16 34 H 0.10 0.89 7.02 -51.93 -0.36 0.52 16 35 H 0.06 0.66 6.25 -51.93 -0.32 0.34 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.76 6.11 -51.93 -0.32 0.45 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.17 2.49 3.91 -56.52 -0.22 2.27 16 43 H 0.07 0.87 8.14 -51.92 -0.42 0.44 16 44 H 0.41 7.61 7.97 -40.82 -0.33 7.29 16 45 H 0.05 1.05 7.90 -51.93 -0.41 0.64 16 46 H 0.08 1.92 8.12 -51.93 -0.42 1.50 16 47 H 0.26 6.82 8.32 -40.82 -0.34 6.48 16 48 H 0.07 1.37 8.08 -51.93 -0.42 0.95 16 49 H 0.08 1.99 8.14 -51.93 -0.42 1.57 16 50 H 0.08 1.62 8.14 -51.93 -0.42 1.19 16 51 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 LS Contribution 397.66 15.07 5.99 5.99 Total: -1.00 -27.01 397.66 -8.37 -35.38 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: -8.48 Total: 11.28 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: -0.59 Total: -0.73 kcal Atomic # 7 Polarization: -44.01 SS G_CDS: -0.04 Total: -44.05 kcal Atomic # 8 Polarization: -22.92 SS G_CDS: -0.22 Total: -23.14 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -27.01 -8.37 -35.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326674767.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.377 kcal (2) G-P(sol) polarization free energy of solvation -27.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds