Wall clock time and date at job start Sat Apr 11 2020 05:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46998 * 2 1 4 4 H 1.08994 * 109.67517 * 55.51766 * 3 2 1 5 5 C 1.53301 * 109.71123 * 176.05578 * 3 2 1 6 6 O 1.42956 * 109.22266 * 67.43893 * 5 3 2 7 7 C 1.42962 * 114.16686 * 62.58136 * 6 5 3 8 8 H 1.09004 * 109.51312 * 57.34152 * 7 6 5 9 9 C 1.53003 * 109.51547 * 177.44246 * 7 6 5 10 10 C 1.53710 * 109.14934 * 297.28560 * 7 6 5 11 11 N 1.47151 * 109.68066 * 294.99736 * 3 2 1 12 12 C 1.34787 * 120.97850 * 110.75369 * 11 3 2 13 13 O 1.21351 * 119.99945 * 5.06411 * 12 11 3 14 14 C 1.49445 * 119.99909 * 185.06522 * 12 11 3 15 15 O 1.21354 * 120.00247 * 84.85107 * 14 12 11 16 16 N 1.34776 * 120.00145 * 264.84705 * 14 12 11 17 17 C 1.46925 * 120.63249 * 174.95298 * 16 14 12 18 18 C 1.53192 * 108.78138 * 233.63449 * 17 16 14 19 19 C 1.53041 * 109.30832 * 305.36822 * 18 17 16 20 20 C 1.50701 * 109.45511 * 181.38485 * 19 18 17 21 21 H 1.08003 * 120.00585 * 359.97302 * 20 19 18 22 22 C 1.37882 * 119.99751 * 179.69813 * 20 19 18 23 23 N 1.31508 * 120.00106 * 0.27423 * 22 20 19 24 24 Si 1.86803 * 119.99936 * 180.27307 * 22 20 19 25 25 H 1.48503 * 109.46932 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.47149 * 119.99734 * 24 22 20 27 27 H 1.48500 * 109.47221 * 240.00122 * 24 22 20 28 28 C 1.53038 * 109.52990 * 61.37201 * 19 18 17 29 29 C 1.46931 * 120.63107 * 354.98637 * 16 14 12 30 30 H 1.09003 * 109.46856 * 60.00019 * 1 2 3 31 31 H 1.09000 * 109.46745 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47193 * 299.99921 * 1 2 3 33 33 H 1.08998 * 109.47193 * 240.00079 * 2 1 3 34 34 H 1.08990 * 109.47429 * 120.00056 * 2 1 3 35 35 H 1.09003 * 109.51028 * 187.36615 * 5 3 2 36 36 H 1.09000 * 109.50771 * 307.51275 * 5 3 2 37 37 H 1.09004 * 109.46945 * 59.99905 * 9 7 6 38 38 H 1.08997 * 109.47537 * 179.97438 * 9 7 6 39 39 H 1.09000 * 109.46734 * 300.00266 * 9 7 6 40 40 H 1.08999 * 109.84232 * 292.86076 * 10 7 6 41 41 H 1.08996 * 109.75034 * 172.16318 * 10 7 6 42 42 H 1.09002 * 109.58077 * 113.84695 * 17 16 14 43 43 H 1.09005 * 109.58649 * 353.42566 * 17 16 14 44 44 H 1.08995 * 109.49659 * 185.41646 * 18 17 16 45 45 H 1.08995 * 109.52124 * 65.33623 * 18 17 16 46 46 H 1.08995 * 109.46424 * 301.35109 * 19 18 17 47 47 H 0.97003 * 119.99898 * 179.97438 * 23 22 20 48 48 H 1.09003 * 109.49549 * 58.57711 * 28 19 18 49 49 H 1.09002 * 109.49746 * 178.67073 * 28 19 18 50 50 H 1.09003 * 109.58322 * 246.15423 * 29 16 14 51 51 H 1.08997 * 109.58149 * 6.43401 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6145 1.9822 0.8460 5 6 3.5698 1.4501 0.0993 6 8 4.1221 0.9061 -1.1018 7 6 3.8195 1.6593 -2.2787 8 1 4.1716 2.6836 -2.1560 9 6 4.5115 1.0221 -3.4854 10 6 2.2985 1.6585 -2.5006 11 7 1.6531 2.1049 -1.2558 12 6 0.7308 3.0878 -1.2662 13 8 0.2735 3.5018 -0.2212 14 6 0.2714 3.6676 -2.5647 15 8 -0.6195 3.1290 -3.1883 16 7 0.8464 4.7887 -3.0432 17 6 0.4836 5.3091 -4.3684 18 6 1.7617 5.4935 -5.1926 19 6 2.7411 6.3773 -4.4168 20 6 3.9860 6.5888 -5.2392 21 1 4.0705 6.1379 -6.2170 22 6 5.0149 7.3628 -4.7458 23 7 4.9121 7.9119 -3.5553 24 14 6.5550 7.6313 -5.7684 25 1 6.4227 6.9117 -7.0607 26 1 6.7308 9.0831 -6.0267 27 1 7.7353 7.1131 -5.0312 28 6 3.1112 5.6951 -3.0978 29 6 1.8485 5.5133 -2.2497 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 3.9210 2.4737 0.2306 36 1 3.8823 0.8452 0.9504 37 1 4.1575 -0.0015 -3.6085 38 1 4.2800 1.5965 -4.3823 39 1 5.5896 1.0169 -3.3249 40 1 1.9612 0.6521 -2.7483 41 1 2.0442 2.3414 -3.3112 42 1 -0.0218 6.2686 -4.2583 43 1 -0.1763 4.6017 -4.8707 44 1 1.5166 5.9688 -6.1424 45 1 2.2181 4.5215 -5.3793 46 1 2.2751 7.3405 -4.2092 47 1 5.6362 8.4561 -3.2080 48 1 3.5546 4.7209 -3.3040 49 1 3.8269 6.3139 -2.5565 50 1 1.4543 6.4894 -1.9668 51 1 2.0873 4.9418 -1.3529 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326826496.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:28:07 Heat of formation + Delta-G solvation = -135.955003 kcal Electronic energy + Delta-G solvation = -32622.586493 eV Core-core repulsion = 28521.040261 eV Total energy + Delta-G solvation = -4101.546231 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.39601 -40.81002 -39.45397 -38.53385 -36.51306 -35.43803 -35.01647 -33.15329 -32.69063 -31.88221 -29.74550 -28.39300 -27.61647 -26.31884 -24.77497 -24.26934 -23.73356 -23.06675 -21.62710 -20.75765 -19.88766 -19.05840 -18.46580 -18.20165 -17.88561 -17.42689 -16.68006 -16.51095 -16.29770 -16.18617 -15.88228 -15.55311 -15.20739 -14.99271 -14.91335 -14.71285 -14.53143 -14.40348 -14.06254 -14.01955 -13.36982 -13.32600 -13.24964 -13.20470 -13.03346 -12.85411 -12.82305 -12.66751 -12.48522 -12.43701 -12.17368 -12.07681 -11.99443 -11.93210 -11.54069 -11.49052 -11.20308 -11.04157 -10.94050 -10.69032 -10.40036 -9.82847 -9.79704 -8.06504 -6.19010 0.84283 0.86832 1.37396 1.42369 1.47300 1.55699 2.07087 2.46058 2.66091 2.91523 3.21651 3.49355 3.61833 3.80355 3.87731 3.91612 3.98328 4.14733 4.16442 4.26092 4.30803 4.35122 4.38219 4.41235 4.50772 4.53257 4.57033 4.58897 4.63968 4.77256 4.81747 4.88747 4.89750 4.95642 4.99758 5.06232 5.12840 5.17564 5.24032 5.28227 5.32259 5.33140 5.41720 5.65064 5.81978 5.97122 6.03817 6.07831 6.10543 6.38786 6.50972 6.59346 6.91433 7.49658 8.97434 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.012968 B = 0.004228 C = 0.003632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2158.633259 B = 6620.680961 C = 7706.716377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C 0.099 3.901 4 H 0.102 0.898 5 C 0.056 3.944 6 O -0.374 6.374 7 C 0.079 3.921 8 H 0.054 0.946 9 C -0.140 4.140 10 C 0.079 3.921 11 N -0.585 5.585 12 C 0.524 3.476 13 O -0.543 6.543 14 C 0.511 3.489 15 O -0.550 6.550 16 N -0.579 5.579 17 C 0.113 3.887 18 C -0.110 4.110 19 C 0.045 3.955 20 C -0.526 4.526 21 H 0.054 0.946 22 C 0.020 3.980 23 N -0.913 5.913 24 Si 0.944 3.056 25 H -0.268 1.268 26 H -0.287 1.287 27 H -0.282 1.282 28 C -0.106 4.106 29 C 0.115 3.885 30 H 0.024 0.976 31 H 0.072 0.928 32 H 0.049 0.951 33 H 0.073 0.927 34 H 0.105 0.895 35 H 0.051 0.949 36 H 0.141 0.859 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.098 0.902 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.092 0.908 44 H 0.073 0.927 45 H 0.055 0.945 46 H 0.002 0.998 47 H 0.260 0.740 48 H 0.040 0.960 49 H 0.079 0.921 50 H 0.069 0.931 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.099 -15.394 5.635 16.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.156 4.156 3 C -0.003 4.003 4 H 0.120 0.880 5 C -0.022 4.022 6 O -0.292 6.292 7 C 0.021 3.979 8 H 0.072 0.928 9 C -0.197 4.197 10 C -0.043 4.043 11 N -0.319 5.319 12 C 0.307 3.693 13 O -0.420 6.420 14 C 0.294 3.706 15 O -0.428 6.428 16 N -0.312 5.312 17 C -0.008 4.008 18 C -0.149 4.149 19 C 0.026 3.974 20 C -0.564 4.564 21 H 0.072 0.928 22 C -0.179 4.179 23 N -0.553 5.553 24 Si 0.771 3.229 25 H -0.192 1.192 26 H -0.213 1.213 27 H -0.208 1.208 28 C -0.144 4.144 29 C -0.007 4.007 30 H 0.044 0.956 31 H 0.091 0.909 32 H 0.068 0.932 33 H 0.091 0.909 34 H 0.123 0.877 35 H 0.069 0.931 36 H 0.158 0.842 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.116 0.884 41 H 0.098 0.902 42 H 0.094 0.906 43 H 0.110 0.890 44 H 0.092 0.908 45 H 0.074 0.926 46 H 0.021 0.979 47 H 0.069 0.931 48 H 0.059 0.941 49 H 0.097 0.903 50 H 0.088 0.912 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.599 -15.493 5.963 16.803 hybrid contribution 0.494 1.129 -0.435 1.307 sum -2.105 -14.364 5.527 15.534 Atomic orbital electron populations 1.21709 0.96201 1.02034 1.00604 1.21765 0.95520 0.93859 1.04501 1.22358 0.96824 0.95077 0.86080 0.87960 1.23136 0.89901 1.00400 0.88728 1.87953 1.74600 1.51797 1.14891 1.22519 0.91963 0.95896 0.87556 0.92819 1.21718 1.01301 1.01992 0.94687 1.22736 0.94011 1.02210 0.85365 1.48263 1.38246 1.34999 1.10376 1.20185 0.79447 0.80469 0.89202 1.90752 1.56874 1.61712 1.32688 1.20320 0.83044 0.81687 0.85551 1.90738 1.30863 1.62443 1.58769 1.48334 1.39721 1.24292 1.18868 1.21877 0.98073 0.99642 0.81242 1.21862 0.94298 1.00253 0.98439 1.18625 0.93312 0.93113 0.92338 1.21522 1.01924 1.30281 1.02661 0.92771 1.25593 1.00954 0.95457 0.95891 1.69956 1.33505 1.33920 1.17943 0.85713 0.80238 0.77551 0.79376 1.19212 1.21276 1.20836 1.21763 0.94883 0.99659 0.98138 1.21933 0.89215 0.96180 0.93395 0.95641 0.90872 0.93158 0.90859 0.87691 0.93089 0.84172 0.90272 0.90404 0.90937 0.88410 0.90185 0.90641 0.89009 0.90846 0.92603 0.97945 0.93083 0.94073 0.90282 0.91246 0.91252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.03 9.80 71.98 0.71 -2.32 16 2 C -0.12 -2.05 5.35 30.60 0.16 -1.88 16 3 C 0.10 2.11 2.63 44.97 0.12 2.23 16 4 H 0.10 2.40 7.06 -2.39 -0.02 2.38 16 5 C 0.06 1.04 6.36 72.08 0.46 1.49 16 6 O -0.37 -8.03 10.10 -148.98 -1.50 -9.53 16 7 C 0.08 1.82 3.41 30.83 0.11 1.92 16 8 H 0.05 1.45 8.14 -2.38 -0.02 1.44 16 9 C -0.14 -2.69 9.57 71.98 0.69 -2.00 16 10 C 0.08 1.93 5.43 86.49 0.47 2.40 16 11 N -0.58 -15.71 2.21 -794.27 -1.75 -17.47 16 12 C 0.52 17.63 5.21 87.27 0.45 18.09 16 13 O -0.54 -20.55 16.53 -3.25 -0.05 -20.60 16 14 C 0.51 18.39 5.55 87.27 0.48 18.87 16 15 O -0.55 -21.72 16.53 -3.26 -0.05 -21.77 16 16 N -0.58 -20.28 2.97 -820.47 -2.44 -22.72 16 17 C 0.11 3.75 6.42 86.36 0.55 4.31 16 18 C -0.11 -4.01 5.30 30.67 0.16 -3.85 16 19 C 0.04 1.99 2.06 -11.51 -0.02 1.96 16 20 C -0.53 -26.21 8.56 25.60 0.22 -25.99 16 21 H 0.05 2.67 7.74 -2.91 -0.02 2.65 16 22 C 0.02 1.02 5.31 84.66 0.45 1.47 16 23 N -0.91 -48.65 11.32 21.45 0.24 -48.41 16 24 Si 0.94 40.79 29.54 68.60 2.03 42.81 16 25 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 26 H -0.29 -12.42 7.11 99.48 0.71 -11.71 16 27 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 28 C -0.11 -4.39 5.15 30.67 0.16 -4.23 16 29 C 0.11 4.16 6.36 86.36 0.55 4.71 16 30 H 0.02 0.65 7.49 -2.39 -0.02 0.64 16 31 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.07 1.29 7.12 -2.39 -0.02 1.27 16 34 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.14 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 38 H 0.08 1.52 8.14 -2.39 -0.02 1.51 16 39 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.10 2.09 7.52 -2.39 -0.02 2.07 16 41 H 0.08 2.20 6.47 -2.39 -0.02 2.18 16 42 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 43 H 0.09 2.92 7.04 -2.38 -0.02 2.91 16 44 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 45 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 46 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 47 H 0.26 13.33 8.31 -92.71 -0.77 12.56 16 48 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 49 H 0.08 3.78 6.05 -2.39 -0.01 3.77 16 50 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 51 H 0.07 2.42 6.29 -2.39 -0.02 2.40 16 Total: -1.00 -61.37 396.19 3.09 -58.28 By element: Atomic # 1 Polarization: 21.33 SS G_CDS: 0.90 Total: 22.23 kcal Atomic # 6 Polarization: 11.46 SS G_CDS: 5.72 Total: 17.17 kcal Atomic # 7 Polarization: -84.64 SS G_CDS: -3.95 Total: -88.59 kcal Atomic # 8 Polarization: -50.29 SS G_CDS: -1.61 Total: -51.91 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 2.03 Total: 42.81 kcal Total: -61.37 3.09 -58.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326826496.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.676 kcal (2) G-P(sol) polarization free energy of solvation -61.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds