Wall clock time and date at job start Sat Apr 11 2020 05:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47431 * 2 1 4 4 C 1.50700 * 109.47092 * 239.99574 * 2 1 3 5 5 H 1.08002 * 119.99770 * 239.99893 * 4 2 1 6 6 C 1.37876 * 119.99720 * 60.00211 * 4 2 1 7 7 N 1.31514 * 120.00513 * 0.02562 * 6 4 2 8 8 Si 1.86809 * 119.99651 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47265 * 0.02562 * 8 6 4 10 10 H 1.48494 * 109.46830 * 120.00397 * 8 6 4 11 11 H 1.48503 * 109.47108 * 240.00004 * 8 6 4 12 12 C 1.53004 * 109.46876 * 119.99637 * 2 1 3 13 13 N 1.46499 * 109.47198 * 299.99984 * 12 2 1 14 14 C 1.34777 * 119.99665 * 180.27868 * 13 12 2 15 15 O 1.21343 * 120.00424 * 359.72011 * 14 13 12 16 16 C 1.49452 * 119.99622 * 179.72283 * 14 13 12 17 17 O 1.21343 * 119.99955 * 0.02562 * 16 14 13 18 18 N 1.34777 * 119.99621 * 179.97438 * 16 14 13 19 19 C 1.46505 * 119.99724 * 180.02562 * 18 16 14 20 20 C 1.52999 * 109.47192 * 180.02562 * 19 18 16 21 21 H 1.09001 * 110.36097 * 305.70307 * 20 19 18 22 22 C 1.54954 * 110.40421 * 183.37152 * 20 19 18 23 23 C 1.55102 * 101.14838 * 203.40254 * 22 20 19 24 24 H 1.09004 * 113.31228 * 154.96938 * 23 22 20 25 25 C 1.54734 * 108.25467 * 281.47068 * 23 22 20 26 26 C 1.56143 * 102.18775 * 145.52555 * 25 23 22 27 27 C 1.54351 * 104.28367 * 321.46246 * 26 25 23 28 28 C 1.53861 * 106.46194 * 26.13559 * 27 26 25 29 29 H 1.09000 * 110.80909 * 117.23892 * 28 27 26 30 30 O 1.43334 * 109.32867 * 240.53823 * 28 27 26 31 31 H 1.08996 * 109.47009 * 300.00615 * 1 2 3 32 32 H 1.09004 * 109.46783 * 60.00030 * 1 2 3 33 33 H 1.08998 * 109.47156 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.47011 * 180.02562 * 3 2 1 35 35 H 1.09004 * 109.46658 * 300.00048 * 3 2 1 36 36 H 1.08996 * 109.47069 * 59.99427 * 3 2 1 37 37 H 0.96999 * 120.00239 * 180.02562 * 7 6 4 38 38 H 1.09009 * 109.46730 * 179.97438 * 12 2 1 39 39 H 1.08998 * 109.46846 * 60.00315 * 12 2 1 40 40 H 0.97001 * 119.99790 * 359.97438 * 13 12 2 41 41 H 0.97000 * 120.00483 * 0.02562 * 18 16 14 42 42 H 1.08995 * 109.46852 * 300.00269 * 19 18 16 43 43 H 1.09001 * 109.47048 * 60.00288 * 19 18 16 44 44 H 1.09002 * 111.08904 * 321.36988 * 22 20 19 45 45 H 1.09002 * 111.08591 * 85.39168 * 22 20 19 46 46 H 1.09005 * 110.75719 * 264.39056 * 25 23 22 47 47 H 1.08997 * 110.75963 * 27.77429 * 25 23 22 48 48 H 1.09001 * 110.72269 * 202.52978 * 26 25 23 49 49 H 1.09002 * 110.05385 * 80.06441 * 26 25 23 50 50 H 1.09004 * 110.06071 * 266.88907 * 27 26 25 51 51 H 1.08997 * 110.10387 * 145.41072 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6992 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6035 8 14 2.3225 -1.1198 -4.0079 9 1 3.1473 -2.2866 -3.6037 10 1 1.1678 -1.5868 -4.8164 11 1 3.1473 -0.1861 -4.8161 12 6 2.0399 -0.7212 1.2493 13 7 1.5516 -0.0305 2.4454 14 6 1.8818 -0.4877 3.6695 15 8 2.5794 -1.4743 3.7810 16 6 1.3887 0.2205 4.8897 17 8 0.6907 1.2068 4.7783 18 7 1.7185 -0.2370 6.1138 19 6 1.2347 0.4570 7.3100 20 6 1.7494 -0.2609 8.5593 21 1 1.4792 -1.3164 8.5285 22 6 1.1811 0.4052 9.8377 23 6 2.2388 -0.0162 10.8909 24 1 2.2949 0.6630 11.7417 25 6 1.9604 -1.4830 11.2975 26 6 3.3999 -2.0362 11.5421 27 6 4.2522 -1.3837 10.4329 28 6 3.5454 -0.0702 10.0556 29 1 4.1809 0.7880 10.2737 30 8 3.1747 -0.1115 8.6717 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 3.1301 1.4424 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9564 0.8899 37 1 0.7090 1.1613 -3.4845 38 1 3.1300 -0.7216 1.2491 39 1 1.6766 -1.7488 1.2493 40 1 0.9942 0.7584 2.3564 41 1 2.2762 -1.0256 6.2029 42 1 1.5984 1.4844 7.3060 43 1 0.1447 0.4574 7.3139 44 1 1.1437 1.4894 9.7316 45 1 0.1985 0.0037 10.0855 46 1 1.3570 -1.5246 12.2043 47 1 1.4760 -2.0239 10.4846 48 1 3.4168 -3.1221 11.4491 49 1 3.7550 -1.7318 12.5267 50 1 4.3050 -2.0422 9.5658 51 1 5.2552 -1.1750 10.8050 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332767244.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:28:48 Heat of formation + Delta-G solvation = -132.783644 kcal Electronic energy + Delta-G solvation = -29546.457127 eV Core-core repulsion = 25445.048416 eV Total energy + Delta-G solvation = -4101.408711 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.94893 -40.22419 -38.31139 -36.45962 -36.07025 -34.67811 -33.27783 -32.49520 -30.86393 -29.39203 -28.11628 -26.45205 -25.70021 -25.41308 -24.87041 -22.81551 -21.90554 -21.14492 -20.45312 -20.04658 -18.97192 -18.28921 -17.07156 -16.72086 -16.43684 -15.88364 -15.58097 -15.41301 -15.34602 -14.86770 -14.64211 -14.53806 -14.26144 -14.19267 -13.75356 -13.31962 -13.10752 -12.91628 -12.64398 -12.47459 -12.19956 -12.16253 -11.92941 -11.55522 -11.49832 -11.38061 -11.37220 -11.23343 -11.16392 -11.11462 -10.99721 -10.87782 -10.65875 -10.38103 -10.18525 -9.91428 -9.63154 -9.51075 -9.29220 -9.19072 -8.77337 -8.56494 -8.35590 -6.01144 -4.11713 1.70993 2.59535 3.24600 3.28046 3.36681 3.40995 3.53189 3.80690 3.96821 4.05457 4.27029 4.40638 4.48015 4.55904 4.66478 4.75843 4.84799 4.92784 4.98293 5.04101 5.06212 5.13088 5.25474 5.26010 5.34261 5.40565 5.46143 5.56047 5.62948 5.69208 5.80249 5.90480 6.14332 6.16220 6.26452 6.49671 6.65486 6.66878 6.85615 6.87581 6.96819 7.02717 7.15511 7.35712 7.57233 7.69537 7.75749 8.01440 8.02076 8.15170 8.35539 8.44807 8.88766 9.54076 11.00274 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.030364 B = 0.001850 C = 0.001792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.921260 B =15133.858533 C =15620.998088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.055 3.945 3 C -0.133 4.133 4 C -0.505 4.505 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.894 3.106 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.285 1.285 12 C 0.128 3.872 13 N -0.681 5.681 14 C 0.496 3.504 15 O -0.535 6.535 16 C 0.508 3.492 17 O -0.523 6.523 18 N -0.701 5.701 19 C 0.122 3.878 20 C 0.068 3.932 21 H 0.079 0.921 22 C -0.144 4.144 23 C -0.123 4.123 24 H 0.101 0.899 25 C -0.123 4.123 26 C -0.125 4.125 27 C -0.142 4.142 28 C 0.078 3.922 29 H 0.091 0.909 30 O -0.365 6.365 31 H 0.008 0.992 32 H 0.087 0.913 33 H 0.027 0.973 34 H 0.027 0.973 35 H 0.087 0.913 36 H 0.009 0.991 37 H 0.260 0.740 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.411 0.589 41 H 0.415 0.585 42 H 0.080 0.920 43 H 0.085 0.915 44 H 0.083 0.917 45 H 0.088 0.912 46 H 0.072 0.928 47 H 0.071 0.929 48 H 0.068 0.932 49 H 0.066 0.934 50 H 0.078 0.922 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.760 -1.407 29.270 29.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.054 3.946 3 C -0.191 4.191 4 C -0.544 4.544 5 H 0.077 0.923 6 C -0.136 4.136 7 N -0.523 5.523 8 Si 0.722 3.278 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.006 3.994 13 N -0.332 5.332 14 C 0.275 3.725 15 O -0.413 6.413 16 C 0.289 3.711 17 O -0.399 6.399 18 N -0.355 5.355 19 C -0.001 4.001 20 C 0.010 3.990 21 H 0.097 0.903 22 C -0.182 4.182 23 C -0.141 4.141 24 H 0.119 0.881 25 C -0.160 4.160 26 C -0.162 4.162 27 C -0.180 4.180 28 C 0.021 3.979 29 H 0.109 0.891 30 O -0.285 6.285 31 H 0.027 0.973 32 H 0.105 0.895 33 H 0.046 0.954 34 H 0.047 0.953 35 H 0.106 0.894 36 H 0.028 0.972 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.248 0.752 41 H 0.252 0.748 42 H 0.098 0.902 43 H 0.103 0.897 44 H 0.102 0.898 45 H 0.107 0.893 46 H 0.090 0.910 47 H 0.090 0.910 48 H 0.087 0.913 49 H 0.085 0.915 50 H 0.097 0.903 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.815 -1.269 28.905 28.944 hybrid contribution 0.229 -0.440 -0.627 0.799 sum 1.044 -1.709 28.278 28.349 Atomic orbital electron populations 1.21851 0.97580 0.99266 1.00387 1.18397 0.92999 0.92894 0.90305 1.21854 0.98628 0.98243 1.00392 1.20989 1.31531 1.12122 0.89751 0.92295 1.24893 0.94874 0.94936 0.98892 1.69819 1.36604 1.22686 1.23158 0.86501 0.78613 0.79711 0.82957 1.19761 1.21083 1.21072 1.21938 0.98563 0.96023 0.82870 1.46212 1.50401 1.31482 1.05138 1.19947 0.82357 0.85252 0.84912 1.90724 1.37823 1.25978 1.86758 1.20475 0.80976 0.84683 0.84983 1.90747 1.36745 1.25492 1.86878 1.45646 1.52982 1.32329 1.04551 1.21576 0.99404 0.97044 0.82115 1.23256 0.81999 0.99403 0.94307 0.90301 1.23250 0.99480 1.01969 0.93513 1.23454 0.94293 0.97992 0.98406 0.88111 1.22837 0.97151 0.94376 1.01641 1.22606 0.94699 1.00288 0.98634 1.22656 0.99115 0.96885 0.99366 1.23313 0.95555 0.97855 0.81210 0.89142 1.88588 1.21243 1.94375 1.24256 0.97256 0.89453 0.95358 0.95343 0.89450 0.97246 0.93016 0.92010 0.92014 0.75207 0.74821 0.90215 0.89661 0.89824 0.89347 0.90970 0.90988 0.91329 0.91533 0.90292 0.91097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 8.08 37.16 0.30 -2.77 16 2 C 0.05 1.29 0.50 -155.66 -0.08 1.21 16 3 C -0.13 -3.10 8.08 37.16 0.30 -2.80 16 4 C -0.51 -13.22 8.01 -34.44 -0.28 -13.50 16 5 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 6 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 7 N -0.88 -23.74 9.35 55.43 0.52 -23.22 16 8 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 9 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 C 0.13 2.73 4.50 -4.04 -0.02 2.71 16 13 N -0.68 -12.99 4.95 -60.73 -0.30 -13.29 16 14 C 0.50 9.02 7.89 -11.58 -0.09 8.93 16 15 O -0.53 -10.61 16.48 5.50 0.09 -10.52 16 16 C 0.51 8.11 7.89 -11.58 -0.09 8.02 16 17 O -0.52 -9.27 16.48 5.50 0.09 -9.18 16 18 N -0.70 -8.84 5.54 -60.73 -0.34 -9.18 16 19 C 0.12 1.20 5.40 -4.04 -0.02 1.18 16 20 C 0.07 0.53 3.06 -25.70 -0.08 0.46 16 21 H 0.08 0.58 7.25 -51.93 -0.38 0.20 16 22 C -0.14 -0.81 5.90 -24.59 -0.15 -0.95 16 23 C -0.12 -0.65 4.07 -87.45 -0.36 -1.01 16 24 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 25 C -0.12 -0.61 6.22 -24.13 -0.15 -0.76 16 26 C -0.12 -0.65 6.86 -24.34 -0.17 -0.82 16 27 C -0.14 -0.94 6.59 -25.58 -0.17 -1.11 16 28 C 0.08 0.56 4.37 -25.14 -0.11 0.45 16 29 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 30 O -0.37 -3.55 10.57 -35.23 -0.37 -3.92 16 31 H 0.01 0.18 6.86 -51.93 -0.36 -0.18 16 32 H 0.09 2.22 6.07 -51.93 -0.32 1.90 16 33 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.09 2.23 6.07 -51.93 -0.32 1.91 16 36 H 0.01 0.18 6.86 -51.93 -0.36 -0.17 16 37 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 38 H 0.06 1.35 8.14 -51.92 -0.42 0.93 16 39 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 40 H 0.41 7.70 5.63 -40.82 -0.23 7.47 16 41 H 0.42 5.03 7.94 -40.82 -0.32 4.71 16 42 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.08 0.46 8.07 -51.93 -0.42 0.04 16 45 H 0.09 0.38 8.03 -51.93 -0.42 -0.03 16 46 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 47 H 0.07 0.39 6.75 -51.93 -0.35 0.04 16 48 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 50 H 0.08 0.62 7.93 -51.93 -0.41 0.21 16 51 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 LS Contribution 398.04 15.07 6.00 6.00 Total: -1.00 -29.44 398.04 -9.06 -38.50 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -8.49 Total: 8.19 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: -1.24 Total: 0.88 kcal Atomic # 7 Polarization: -45.57 SS G_CDS: -0.12 Total: -45.69 kcal Atomic # 8 Polarization: -23.43 SS G_CDS: -0.19 Total: -23.62 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -29.44 -9.06 -38.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332767244.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.285 kcal (2) G-P(sol) polarization free energy of solvation -29.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds