Wall clock time and date at job start Sat Apr 11 2020 05:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47431 * 2 1 4 4 C 1.50700 * 109.47092 * 239.99574 * 2 1 3 5 5 H 1.08002 * 119.99770 * 239.99893 * 4 2 1 6 6 C 1.37876 * 119.99720 * 60.00211 * 4 2 1 7 7 N 1.31514 * 120.00513 * 0.02562 * 6 4 2 8 8 Si 1.86809 * 119.99651 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47265 * 0.02562 * 8 6 4 10 10 H 1.48494 * 109.46830 * 120.00397 * 8 6 4 11 11 H 1.48503 * 109.47108 * 240.00004 * 8 6 4 12 12 C 1.53004 * 109.46876 * 119.99637 * 2 1 3 13 13 N 1.46499 * 109.47198 * 299.99984 * 12 2 1 14 14 C 1.34777 * 119.99665 * 180.27868 * 13 12 2 15 15 O 1.21343 * 120.00424 * 359.72011 * 14 13 12 16 16 C 1.49452 * 119.99622 * 179.72283 * 14 13 12 17 17 O 1.21343 * 119.99955 * 0.02562 * 16 14 13 18 18 N 1.34777 * 119.99621 * 179.97438 * 16 14 13 19 19 C 1.46505 * 119.99724 * 180.02562 * 18 16 14 20 20 C 1.52999 * 109.47192 * 180.02562 * 19 18 16 21 21 H 1.09001 * 110.36097 * 305.70307 * 20 19 18 22 22 C 1.54954 * 110.40421 * 183.37152 * 20 19 18 23 23 C 1.55102 * 101.14838 * 203.40254 * 22 20 19 24 24 H 1.09004 * 113.31228 * 154.96938 * 23 22 20 25 25 C 1.54734 * 108.25467 * 281.47068 * 23 22 20 26 26 C 1.56143 * 102.18775 * 145.52555 * 25 23 22 27 27 C 1.54351 * 104.28367 * 321.46246 * 26 25 23 28 28 C 1.53861 * 106.46194 * 26.13559 * 27 26 25 29 29 H 1.09000 * 110.80909 * 117.23892 * 28 27 26 30 30 O 1.43334 * 109.32867 * 240.53823 * 28 27 26 31 31 H 1.08996 * 109.47009 * 300.00615 * 1 2 3 32 32 H 1.09004 * 109.46783 * 60.00030 * 1 2 3 33 33 H 1.08998 * 109.47156 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.47011 * 180.02562 * 3 2 1 35 35 H 1.09004 * 109.46658 * 300.00048 * 3 2 1 36 36 H 1.08996 * 109.47069 * 59.99427 * 3 2 1 37 37 H 0.96999 * 120.00239 * 180.02562 * 7 6 4 38 38 H 1.09009 * 109.46730 * 179.97438 * 12 2 1 39 39 H 1.08998 * 109.46846 * 60.00315 * 12 2 1 40 40 H 0.97001 * 119.99790 * 359.97438 * 13 12 2 41 41 H 0.97000 * 120.00483 * 0.02562 * 18 16 14 42 42 H 1.08995 * 109.46852 * 300.00269 * 19 18 16 43 43 H 1.09001 * 109.47048 * 60.00288 * 19 18 16 44 44 H 1.09002 * 111.08904 * 321.36988 * 22 20 19 45 45 H 1.09002 * 111.08591 * 85.39168 * 22 20 19 46 46 H 1.09005 * 110.75719 * 264.39056 * 25 23 22 47 47 H 1.08997 * 110.75963 * 27.77429 * 25 23 22 48 48 H 1.09001 * 110.72269 * 202.52978 * 26 25 23 49 49 H 1.09002 * 110.05385 * 80.06441 * 26 25 23 50 50 H 1.09004 * 110.06071 * 266.88907 * 27 26 25 51 51 H 1.08997 * 110.10387 * 145.41072 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6992 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6035 8 14 2.3225 -1.1198 -4.0079 9 1 3.1473 -2.2866 -3.6037 10 1 1.1678 -1.5868 -4.8164 11 1 3.1473 -0.1861 -4.8161 12 6 2.0399 -0.7212 1.2493 13 7 1.5516 -0.0305 2.4454 14 6 1.8818 -0.4877 3.6695 15 8 2.5794 -1.4743 3.7810 16 6 1.3887 0.2205 4.8897 17 8 0.6907 1.2068 4.7783 18 7 1.7185 -0.2370 6.1138 19 6 1.2347 0.4570 7.3100 20 6 1.7494 -0.2609 8.5593 21 1 1.4792 -1.3164 8.5285 22 6 1.1811 0.4052 9.8377 23 6 2.2388 -0.0162 10.8909 24 1 2.2949 0.6630 11.7417 25 6 1.9604 -1.4830 11.2975 26 6 3.3999 -2.0362 11.5421 27 6 4.2522 -1.3837 10.4329 28 6 3.5454 -0.0702 10.0556 29 1 4.1809 0.7880 10.2737 30 8 3.1747 -0.1115 8.6717 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 3.1301 1.4424 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9564 0.8899 37 1 0.7090 1.1613 -3.4845 38 1 3.1300 -0.7216 1.2491 39 1 1.6766 -1.7488 1.2493 40 1 0.9942 0.7584 2.3564 41 1 2.2762 -1.0256 6.2029 42 1 1.5984 1.4844 7.3060 43 1 0.1447 0.4574 7.3139 44 1 1.1437 1.4894 9.7316 45 1 0.1985 0.0037 10.0855 46 1 1.3570 -1.5246 12.2043 47 1 1.4760 -2.0239 10.4846 48 1 3.4168 -3.1221 11.4491 49 1 3.7550 -1.7318 12.5267 50 1 4.3050 -2.0422 9.5658 51 1 5.2552 -1.1750 10.8050 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332767244.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:28:48 Heat of formation + Delta-G solvation = -151.617232 kcal Electronic energy + Delta-G solvation = -29547.273812 eV Core-core repulsion = 25445.048416 eV Total energy + Delta-G solvation = -4102.225397 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.80780 -41.29325 -39.72294 -38.19971 -36.85060 -35.61038 -34.92094 -33.12010 -32.74453 -30.13323 -28.61222 -27.91954 -27.58945 -27.23468 -25.97729 -24.05045 -22.55535 -21.63857 -21.38753 -20.93377 -20.70833 -19.70196 -18.05156 -17.82547 -17.57853 -17.29541 -16.81098 -16.72244 -16.46952 -16.01279 -15.88507 -15.56023 -15.12469 -15.06803 -14.77695 -14.70791 -14.48850 -14.24501 -14.04323 -13.79126 -13.22066 -13.14356 -13.03632 -12.82387 -12.71502 -12.70193 -12.56156 -12.45792 -12.28235 -12.12155 -11.97271 -11.92936 -11.71229 -11.51780 -11.51188 -11.43579 -11.30342 -10.76823 -10.63469 -10.52081 -10.41858 -10.36456 -10.12786 -8.01564 -6.17895 0.33818 1.33844 1.43045 1.47372 1.56750 2.13811 2.44946 2.59874 2.80206 3.22168 3.32208 3.46170 3.61904 3.70487 3.94353 4.04440 4.12670 4.30623 4.34160 4.38679 4.46656 4.50342 4.54287 4.59112 4.64164 4.67557 4.71692 4.76874 4.92050 4.96854 5.01328 5.03797 5.05850 5.07369 5.15434 5.16971 5.17565 5.21386 5.24102 5.37317 5.46015 5.47730 5.64529 5.67771 5.91935 6.08495 6.10941 6.18652 6.37068 6.41260 6.71820 6.86245 6.95738 7.49924 8.97906 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.030364 B = 0.001850 C = 0.001792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.921260 B =15133.858533 C =15620.998088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.049 3.951 3 C -0.124 4.124 4 C -0.524 4.524 5 H 0.051 0.949 6 C 0.025 3.975 7 N -0.901 5.901 8 Si 0.949 3.051 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.283 1.283 12 C 0.142 3.858 13 N -0.681 5.681 14 C 0.497 3.503 15 O -0.552 6.552 16 C 0.513 3.487 17 O -0.542 6.542 18 N -0.685 5.685 19 C 0.119 3.881 20 C 0.069 3.931 21 H 0.085 0.915 22 C -0.138 4.138 23 C -0.116 4.116 24 H 0.117 0.883 25 C -0.121 4.121 26 C -0.123 4.123 27 C -0.144 4.144 28 C 0.068 3.932 29 H 0.092 0.908 30 O -0.393 6.393 31 H 0.030 0.970 32 H 0.064 0.936 33 H 0.024 0.976 34 H 0.023 0.977 35 H 0.064 0.936 36 H 0.029 0.971 37 H 0.260 0.740 38 H 0.053 0.947 39 H 0.055 0.945 40 H 0.413 0.587 41 H 0.418 0.582 42 H 0.073 0.927 43 H 0.099 0.901 44 H 0.086 0.914 45 H 0.106 0.894 46 H 0.086 0.914 47 H 0.066 0.934 48 H 0.067 0.933 49 H 0.077 0.923 50 H 0.060 0.940 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.329 -1.517 31.375 31.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.048 3.952 3 C -0.181 4.181 4 C -0.562 4.562 5 H 0.069 0.931 6 C -0.175 4.175 7 N -0.539 5.539 8 Si 0.776 3.224 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 C 0.020 3.980 13 N -0.333 5.333 14 C 0.277 3.723 15 O -0.431 6.431 16 C 0.294 3.706 17 O -0.419 6.419 18 N -0.338 5.338 19 C -0.003 4.003 20 C 0.012 3.988 21 H 0.102 0.898 22 C -0.176 4.176 23 C -0.134 4.134 24 H 0.135 0.865 25 C -0.159 4.159 26 C -0.160 4.160 27 C -0.181 4.181 28 C 0.011 3.989 29 H 0.109 0.891 30 O -0.313 6.313 31 H 0.049 0.951 32 H 0.082 0.918 33 H 0.043 0.957 34 H 0.042 0.958 35 H 0.083 0.917 36 H 0.048 0.952 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.251 0.749 41 H 0.255 0.745 42 H 0.092 0.908 43 H 0.117 0.883 44 H 0.104 0.896 45 H 0.124 0.876 46 H 0.105 0.895 47 H 0.085 0.915 48 H 0.086 0.914 49 H 0.095 0.905 50 H 0.079 0.921 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.389 -1.387 31.052 31.086 hybrid contribution 0.411 -0.417 -1.218 1.352 sum 0.801 -1.805 29.834 29.900 Atomic orbital electron populations 1.21697 0.97223 0.98937 1.00229 1.18404 0.93268 0.93014 0.90499 1.21705 0.98189 0.98030 1.00221 1.21257 1.31664 1.12204 0.91113 0.93071 1.25512 0.95175 0.95618 1.01186 1.69931 1.37067 1.23378 1.23572 0.85643 0.78046 0.78697 0.80020 1.19669 1.20860 1.20922 1.21560 0.97892 0.95550 0.83028 1.46062 1.50687 1.31535 1.04972 1.20349 0.81652 0.84917 0.85333 1.90713 1.38500 1.26791 1.87099 1.19977 0.81162 0.84407 0.85095 1.90745 1.37924 1.26241 1.87031 1.45695 1.51766 1.31983 1.04351 1.21822 1.00232 0.96673 0.81590 1.23301 0.81559 0.99686 0.94292 0.89774 1.23261 1.00252 1.02032 0.92094 1.23470 0.92861 0.98606 0.98464 0.86481 1.22851 0.96977 0.93912 1.02114 1.22605 0.94743 1.00167 0.98522 1.22648 0.99750 0.96520 0.99219 1.23496 0.96760 0.98075 0.80573 0.89051 1.88557 1.22276 1.94501 1.25934 0.95139 0.91762 0.95707 0.95827 0.91731 0.95182 0.93048 0.92843 0.92652 0.74874 0.74468 0.90830 0.88300 0.89552 0.87589 0.89491 0.91548 0.91398 0.90458 0.92123 0.90742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.65 8.08 71.98 0.58 -5.07 16 2 C 0.05 2.30 0.50 -52.93 -0.03 2.27 16 3 C -0.12 -5.72 8.08 71.98 0.58 -5.14 16 4 C -0.52 -27.54 8.01 25.60 0.21 -27.34 16 5 H 0.05 2.71 7.74 -2.91 -0.02 2.68 16 6 C 0.02 1.31 5.15 84.65 0.44 1.74 16 7 N -0.90 -48.62 9.35 21.45 0.20 -48.42 16 8 Si 0.95 42.64 29.54 68.60 2.03 44.66 16 9 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 10 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 11 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 12 C 0.14 6.06 4.50 86.38 0.39 6.45 16 13 N -0.68 -25.52 4.95 -464.40 -2.30 -27.82 16 14 C 0.50 17.74 7.89 87.27 0.69 18.43 16 15 O -0.55 -21.63 16.48 -3.23 -0.05 -21.69 16 16 C 0.51 15.86 7.89 87.27 0.69 16.55 16 17 O -0.54 -18.54 16.48 -3.22 -0.05 -18.59 16 18 N -0.69 -16.50 5.54 -464.41 -2.57 -19.07 16 19 C 0.12 2.16 5.40 86.38 0.47 2.63 16 20 C 0.07 0.97 3.06 31.26 0.10 1.07 16 21 H 0.08 1.10 7.25 -2.39 -0.02 1.08 16 22 C -0.14 -1.20 5.90 31.98 0.19 -1.01 16 23 C -0.12 -0.95 4.07 -8.74 -0.04 -0.99 16 24 H 0.12 0.62 8.14 -2.38 -0.02 0.60 16 25 C -0.12 -0.91 6.22 32.28 0.20 -0.71 16 26 C -0.12 -1.07 6.86 32.14 0.22 -0.85 16 27 C -0.14 -1.78 6.59 31.34 0.21 -1.58 16 28 C 0.07 0.90 4.37 31.63 0.14 1.04 16 29 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 30 O -0.39 -7.31 10.57 -148.98 -1.58 -8.88 16 31 H 0.03 1.23 6.86 -2.39 -0.02 1.21 16 32 H 0.06 3.27 6.07 -2.38 -0.01 3.25 16 33 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.06 3.30 6.07 -2.38 -0.01 3.29 16 36 H 0.03 1.22 6.86 -2.39 -0.02 1.20 16 37 H 0.26 13.48 8.31 -92.71 -0.77 12.71 16 38 H 0.05 2.35 8.14 -2.38 -0.02 2.33 16 39 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 40 H 0.41 15.08 5.63 -92.71 -0.52 14.56 16 41 H 0.42 9.75 7.94 -92.71 -0.74 9.01 16 42 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.09 0.73 8.07 -2.39 -0.02 0.71 16 45 H 0.11 0.58 8.03 -2.39 -0.02 0.56 16 46 H 0.09 0.43 8.14 -2.38 -0.02 0.41 16 47 H 0.07 0.58 6.75 -2.39 -0.02 0.57 16 48 H 0.07 0.60 8.14 -2.39 -0.02 0.59 16 49 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 50 H 0.06 0.96 7.93 -2.39 -0.02 0.95 16 51 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -62.14 398.04 0.38 -61.76 By element: Atomic # 1 Polarization: 30.88 SS G_CDS: -0.32 Total: 30.57 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: 5.02 Total: 7.48 kcal Atomic # 7 Polarization: -90.63 SS G_CDS: -4.67 Total: -95.31 kcal Atomic # 8 Polarization: -47.48 SS G_CDS: -1.68 Total: -49.16 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.66 kcal Total: -62.14 0.38 -61.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332767244.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.856 kcal (2) G-P(sol) polarization free energy of solvation -62.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds