Wall clock time and date at job start Sat Apr 11 2020 05:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47082 * 2 1 4 4 C 1.50704 * 109.46824 * 120.00057 * 2 1 3 5 5 H 1.08001 * 119.99810 * 119.76659 * 4 2 1 6 6 C 1.37870 * 119.99822 * 299.76011 * 4 2 1 7 7 N 1.31516 * 120.00436 * 1.44681 * 6 4 2 8 8 Si 1.86811 * 119.99684 * 181.45147 * 6 4 2 9 9 H 1.48495 * 109.46873 * 180.02562 * 8 6 4 10 10 H 1.48495 * 109.46713 * 299.99767 * 8 6 4 11 11 H 1.48498 * 109.47017 * 60.00011 * 8 6 4 12 12 C 1.52999 * 109.47351 * 240.00011 * 2 1 3 13 13 N 1.46503 * 109.46954 * 60.00175 * 12 2 1 14 14 C 1.34781 * 119.99837 * 180.02562 * 13 12 2 15 15 O 1.21347 * 119.99736 * 0.02562 * 14 13 12 16 16 C 1.49450 * 119.99662 * 179.97438 * 14 13 12 17 17 O 1.21347 * 120.00133 * 0.02562 * 16 14 13 18 18 N 1.34781 * 119.99662 * 180.02562 * 16 14 13 19 19 C 1.46495 * 119.99712 * 179.97438 * 18 16 14 20 20 C 1.53006 * 109.47088 * 180.02562 * 19 18 16 21 21 H 1.09006 * 109.96604 * 305.20119 * 20 19 18 22 22 C 1.56423 * 109.98045 * 183.90592 * 20 19 18 23 23 C 1.49681 * 99.98053 * 219.71466 * 22 20 19 24 24 H 1.08998 * 107.89889 * 289.54551 * 23 22 20 25 25 C 1.49294 * 129.34091 * 155.30080 * 23 22 20 26 26 C 1.56331 * 101.87941 * 202.07557 * 25 23 22 27 27 C 1.55581 * 105.94746 * 23.84025 * 26 25 23 28 28 C 1.52211 * 104.67440 * 7.54478 * 27 26 25 29 29 H 1.09008 * 110.68050 * 83.83569 * 28 27 26 30 30 O 1.41475 * 121.57915 * 216.28961 * 28 27 26 31 31 H 1.09005 * 109.47474 * 292.65893 * 1 2 3 32 32 H 1.09004 * 109.47345 * 52.65532 * 1 2 3 33 33 H 1.08997 * 109.47403 * 172.65106 * 1 2 3 34 34 H 1.09005 * 109.47099 * 187.44978 * 3 2 1 35 35 H 1.08994 * 109.47499 * 307.45413 * 3 2 1 36 36 H 1.09003 * 109.46851 * 67.45673 * 3 2 1 37 37 H 0.96997 * 119.99640 * 357.21354 * 7 6 4 38 38 H 1.08997 * 109.47420 * 180.02562 * 12 2 1 39 39 H 1.09000 * 109.47506 * 300.00242 * 12 2 1 40 40 H 0.96996 * 119.99934 * 359.97438 * 13 12 2 41 41 H 0.96998 * 119.99705 * 0.02562 * 18 16 14 42 42 H 1.08997 * 109.47993 * 300.00271 * 19 18 16 43 43 H 1.08997 * 109.46955 * 60.00734 * 19 18 16 44 44 H 1.09001 * 111.30199 * 337.39906 * 22 20 19 45 45 H 1.08998 * 111.30332 * 102.02930 * 22 20 19 46 46 H 1.08995 * 110.94692 * 83.93261 * 25 23 22 47 47 H 1.08998 * 110.94826 * 320.22047 * 25 23 22 48 48 H 1.09000 * 110.15605 * 264.71641 * 26 25 23 49 49 H 1.09001 * 110.21436 * 142.99093 * 26 25 23 50 50 H 1.08998 * 110.39748 * 248.74636 * 27 26 25 51 51 H 1.09000 * 110.49888 * 126.39395 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6500 -1.5908 1.1314 6 6 1.7032 -0.2365 2.4827 7 7 0.9276 0.8188 2.6036 8 14 2.3591 -1.0933 4.0077 9 1 1.8627 -0.3943 5.2201 10 1 1.8915 -2.5026 4.0232 11 1 3.8437 -1.0643 3.9918 12 6 2.0400 -0.7212 -1.2492 13 7 1.5517 -0.0306 -2.4454 14 6 1.8769 -0.4913 -3.6695 15 8 2.5738 -1.4785 -3.7808 16 6 1.3783 0.2129 -4.8898 17 8 0.6810 1.1998 -4.7784 18 7 1.7031 -0.2481 -6.1139 19 6 1.2139 0.4419 -7.3100 20 6 1.7226 -0.2803 -8.5593 21 1 2.8086 -0.3665 -8.5232 22 6 1.2902 0.5026 -9.8426 23 6 0.9358 -0.6430 -10.7384 24 1 1.8600 -1.1510 -11.0139 25 6 0.0067 -0.6788 -11.9064 26 6 -0.3388 -2.2009 -11.9962 27 6 -0.0965 -2.7789 -10.5722 28 6 0.1806 -1.5603 -9.7034 29 1 -0.7521 -1.1056 -9.3693 30 8 1.1223 -1.6012 -8.6484 31 1 -0.3634 0.3959 0.9484 32 1 -0.3634 0.6234 -0.8170 33 1 -0.3634 -1.0192 -0.1314 34 1 3.1218 1.4454 -0.1332 35 1 1.5719 1.9934 -0.8157 36 1 1.7896 1.9164 0.9492 37 1 0.6201 1.2878 1.8122 38 1 3.1300 -0.7216 -1.2490 39 1 1.6767 -1.7489 -1.2493 40 1 0.9937 0.7578 -2.3564 41 1 2.2602 -1.0372 -6.2028 42 1 0.1239 0.4419 -7.3093 43 1 1.5773 1.4695 -7.3108 44 1 0.4243 1.1353 -9.6475 45 1 2.1180 1.0828 -10.2502 46 1 0.5072 -0.3388 -12.8130 47 1 -0.8876 -0.0871 -11.7113 48 1 0.3143 -2.6924 -12.7173 49 1 -1.3819 -2.3340 -12.2831 50 1 0.7646 -3.4472 -10.5750 51 1 -0.9831 -3.3046 -10.2177 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332767245.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:28:51 Heat of formation + Delta-G solvation = -110.327885 kcal Electronic energy + Delta-G solvation = -29501.788543 eV Core-core repulsion = 25401.353587 eV Total energy + Delta-G solvation = -4100.434956 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.26197 -40.33874 -38.44387 -36.84542 -36.66323 -34.89398 -33.56285 -32.54708 -30.58902 -29.30365 -28.30558 -26.60811 -26.04259 -25.63313 -24.70908 -22.84159 -21.90759 -20.85985 -20.56144 -20.16164 -19.03760 -18.46825 -17.78172 -16.78292 -16.64232 -16.18844 -15.74125 -15.60938 -15.31825 -15.08654 -14.87753 -14.44271 -14.03534 -13.80300 -13.73566 -13.46347 -13.09497 -12.89708 -12.77443 -12.73910 -12.62067 -12.44053 -12.25557 -11.80155 -11.54248 -11.53981 -11.33119 -11.31824 -11.28898 -10.97797 -10.96100 -10.65495 -10.62384 -10.60373 -10.08796 -9.94127 -9.90524 -9.60657 -9.38575 -9.36044 -8.66252 -8.45128 -8.31332 -6.26320 -4.11961 1.62490 2.47788 2.93322 3.44239 3.44467 3.44852 3.63682 3.81752 3.94546 4.06747 4.09722 4.43969 4.45834 4.51459 4.57824 4.71580 4.75160 4.78732 4.89061 4.98141 5.01888 5.13417 5.25413 5.31967 5.32741 5.40940 5.45101 5.51967 5.59161 5.66856 5.75918 5.82116 5.91116 6.08680 6.09813 6.25094 6.51028 6.51450 6.59278 6.65481 6.72412 6.77430 7.04008 7.08444 7.10368 7.48782 7.64142 7.65323 7.93256 8.15131 8.32637 8.38195 8.82353 9.59122 10.99613 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.032544 B = 0.001798 C = 0.001767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.166683 B =15570.723878 C =15845.359013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.040 3.960 3 C -0.147 4.147 4 C -0.586 4.586 5 H 0.053 0.947 6 C 0.026 3.974 7 N -0.916 5.916 8 Si 1.066 2.934 9 H -0.283 1.283 10 H -0.288 1.288 11 H -0.288 1.288 12 C 0.136 3.864 13 N -0.684 5.684 14 C 0.497 3.503 15 O -0.532 6.532 16 C 0.508 3.492 17 O -0.524 6.524 18 N -0.699 5.699 19 C 0.107 3.893 20 C 0.067 3.933 21 H 0.100 0.900 22 C -0.125 4.125 23 C -0.146 4.146 24 H 0.079 0.921 25 C -0.103 4.103 26 C -0.119 4.119 27 C -0.117 4.117 28 C 0.060 3.940 29 H 0.071 0.929 30 O -0.359 6.359 31 H 0.075 0.925 32 H 0.018 0.982 33 H 0.037 0.963 34 H 0.037 0.963 35 H 0.018 0.982 36 H 0.073 0.927 37 H 0.281 0.719 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.410 0.590 41 H 0.416 0.584 42 H 0.076 0.924 43 H 0.085 0.915 44 H 0.083 0.917 45 H 0.088 0.912 46 H 0.071 0.929 47 H 0.071 0.929 48 H 0.070 0.930 49 H 0.070 0.930 50 H 0.075 0.925 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.222 -1.137 -30.056 30.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.039 3.961 3 C -0.205 4.205 4 C -0.624 4.624 5 H 0.071 0.929 6 C -0.179 4.179 7 N -0.556 5.556 8 Si 0.895 3.105 9 H -0.208 1.208 10 H -0.215 1.215 11 H -0.215 1.215 12 C 0.014 3.986 13 N -0.335 5.335 14 C 0.276 3.724 15 O -0.410 6.410 16 C 0.289 3.711 17 O -0.399 6.399 18 N -0.353 5.353 19 C -0.016 4.016 20 C 0.009 3.991 21 H 0.118 0.882 22 C -0.163 4.163 23 C -0.164 4.164 24 H 0.097 0.903 25 C -0.140 4.140 26 C -0.157 4.157 27 C -0.155 4.155 28 C 0.002 3.998 29 H 0.089 0.911 30 O -0.278 6.278 31 H 0.093 0.907 32 H 0.037 0.963 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.037 0.963 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.246 0.754 41 H 0.253 0.747 42 H 0.094 0.906 43 H 0.103 0.897 44 H 0.102 0.898 45 H 0.107 0.893 46 H 0.090 0.910 47 H 0.090 0.910 48 H 0.089 0.911 49 H 0.089 0.911 50 H 0.094 0.906 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.221 -1.289 -28.226 28.282 hybrid contribution 0.038 0.055 -1.793 1.795 sum -1.183 -1.234 -30.019 30.068 Atomic orbital electron populations 1.22094 0.98152 0.99453 1.00950 1.18557 0.92507 0.92849 0.92142 1.22079 0.99345 0.98247 1.00859 1.21711 1.35533 1.14105 0.91073 0.92914 1.25684 0.94678 0.96494 1.00999 1.70875 1.31341 1.18696 1.34694 0.83583 0.75914 0.75391 0.75651 1.20841 1.21488 1.21469 1.21815 0.98614 0.95943 0.82192 1.46194 1.50680 1.31461 1.05210 1.19959 0.82343 0.85205 0.84883 1.90734 1.37749 1.25753 1.86740 1.20452 0.81021 0.84658 0.84988 1.90746 1.36734 1.25567 1.86891 1.45626 1.52962 1.32253 1.04488 1.21860 1.00399 0.96323 0.83055 1.23914 0.98667 0.82742 0.93753 0.88187 1.22005 1.02953 0.97403 0.93931 1.22108 1.00218 0.97635 0.96484 0.90306 1.21307 0.98879 0.96626 0.97193 1.22852 1.02009 0.94717 0.96125 1.22013 1.02679 0.96766 0.94013 1.23361 0.92850 0.97165 0.86463 0.91086 1.88540 1.55790 1.30055 1.53382 0.90665 0.96334 0.94398 0.94370 0.96261 0.90854 0.90235 0.91815 0.91821 0.75362 0.74747 0.90591 0.89733 0.89811 0.89310 0.90991 0.91028 0.91126 0.91098 0.90590 0.90820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.39 7.88 37.15 0.29 -3.10 16 2 C 0.04 0.94 0.50 -155.66 -0.08 0.87 16 3 C -0.15 -3.33 7.88 37.16 0.29 -3.04 16 4 C -0.59 -15.58 8.01 -34.44 -0.28 -15.85 16 5 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 6 C 0.03 0.69 5.10 -17.82 -0.09 0.60 16 7 N -0.92 -25.92 12.12 55.43 0.67 -25.25 16 8 Si 1.07 24.45 29.90 -169.99 -5.08 19.37 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 10 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 12 C 0.14 2.90 4.49 -4.04 -0.02 2.88 16 13 N -0.68 -12.88 5.03 -60.73 -0.31 -13.18 16 14 C 0.50 8.95 7.89 -11.58 -0.09 8.86 16 15 O -0.53 -10.50 16.48 5.50 0.09 -10.41 16 16 C 0.51 8.00 7.89 -11.58 -0.09 7.91 16 17 O -0.52 -9.15 16.48 5.50 0.09 -9.05 16 18 N -0.70 -8.68 5.53 -60.73 -0.34 -9.02 16 19 C 0.11 1.03 5.28 -4.04 -0.02 1.01 16 20 C 0.07 0.51 3.53 -24.89 -0.09 0.42 16 21 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 22 C -0.12 -0.68 6.41 -26.53 -0.17 -0.85 16 23 C -0.15 -0.85 2.65 -91.59 -0.24 -1.10 16 24 H 0.08 0.51 8.10 -51.93 -0.42 0.09 16 25 C -0.10 -0.47 6.72 -26.77 -0.18 -0.65 16 26 C -0.12 -0.56 6.94 -23.57 -0.16 -0.72 16 27 C -0.12 -0.75 6.72 -25.76 -0.17 -0.93 16 28 C 0.06 0.46 3.79 -24.64 -0.09 0.37 16 29 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 30 O -0.36 -3.56 11.10 -35.14 -0.39 -3.95 16 31 H 0.07 1.88 5.20 -51.93 -0.27 1.61 16 32 H 0.02 0.37 7.05 -51.93 -0.37 0.00 16 33 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.02 0.38 7.05 -51.93 -0.37 0.01 16 36 H 0.07 1.82 5.25 -51.93 -0.27 1.55 16 37 H 0.28 7.74 3.56 -40.82 -0.15 7.59 16 38 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 39 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 40 H 0.41 7.51 5.77 -40.82 -0.24 7.28 16 41 H 0.42 4.98 7.94 -40.82 -0.32 4.66 16 42 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.08 0.42 7.91 -51.93 -0.41 0.01 16 45 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 47 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 48 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 49 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 50 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 51 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 LS Contribution 397.35 15.07 5.99 5.99 Total: -1.00 -30.92 397.35 -8.82 -39.74 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: -8.35 Total: 9.09 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: -1.19 Total: -3.32 kcal Atomic # 7 Polarization: -47.48 SS G_CDS: 0.03 Total: -47.45 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: -0.21 Total: -23.42 kcal Atomic # 14 Polarization: 24.45 SS G_CDS: -5.08 Total: 19.37 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -30.92 -8.82 -39.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332767245.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.587 kcal (2) G-P(sol) polarization free energy of solvation -30.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds