Wall clock time and date at job start Sat Apr 11 2020 05:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47082 * 2 1 4 4 C 1.50704 * 109.46824 * 120.00057 * 2 1 3 5 5 H 1.08001 * 119.99810 * 119.76659 * 4 2 1 6 6 C 1.37870 * 119.99822 * 299.76011 * 4 2 1 7 7 N 1.31516 * 120.00436 * 1.44681 * 6 4 2 8 8 Si 1.86811 * 119.99684 * 181.45147 * 6 4 2 9 9 H 1.48495 * 109.46873 * 180.02562 * 8 6 4 10 10 H 1.48495 * 109.46713 * 299.99767 * 8 6 4 11 11 H 1.48498 * 109.47017 * 60.00011 * 8 6 4 12 12 C 1.52999 * 109.47351 * 240.00011 * 2 1 3 13 13 N 1.46503 * 109.46954 * 60.00175 * 12 2 1 14 14 C 1.34781 * 119.99837 * 180.02562 * 13 12 2 15 15 O 1.21347 * 119.99736 * 0.02562 * 14 13 12 16 16 C 1.49450 * 119.99662 * 179.97438 * 14 13 12 17 17 O 1.21347 * 120.00133 * 0.02562 * 16 14 13 18 18 N 1.34781 * 119.99662 * 180.02562 * 16 14 13 19 19 C 1.46495 * 119.99712 * 179.97438 * 18 16 14 20 20 C 1.53006 * 109.47088 * 180.02562 * 19 18 16 21 21 H 1.09006 * 109.96604 * 305.20119 * 20 19 18 22 22 C 1.56423 * 109.98045 * 183.90592 * 20 19 18 23 23 C 1.49681 * 99.98053 * 219.71466 * 22 20 19 24 24 H 1.08998 * 107.89889 * 289.54551 * 23 22 20 25 25 C 1.49294 * 129.34091 * 155.30080 * 23 22 20 26 26 C 1.56331 * 101.87941 * 202.07557 * 25 23 22 27 27 C 1.55581 * 105.94746 * 23.84025 * 26 25 23 28 28 C 1.52211 * 104.67440 * 7.54478 * 27 26 25 29 29 H 1.09008 * 110.68050 * 83.83569 * 28 27 26 30 30 O 1.41475 * 121.57915 * 216.28961 * 28 27 26 31 31 H 1.09005 * 109.47474 * 292.65893 * 1 2 3 32 32 H 1.09004 * 109.47345 * 52.65532 * 1 2 3 33 33 H 1.08997 * 109.47403 * 172.65106 * 1 2 3 34 34 H 1.09005 * 109.47099 * 187.44978 * 3 2 1 35 35 H 1.08994 * 109.47499 * 307.45413 * 3 2 1 36 36 H 1.09003 * 109.46851 * 67.45673 * 3 2 1 37 37 H 0.96997 * 119.99640 * 357.21354 * 7 6 4 38 38 H 1.08997 * 109.47420 * 180.02562 * 12 2 1 39 39 H 1.09000 * 109.47506 * 300.00242 * 12 2 1 40 40 H 0.96996 * 119.99934 * 359.97438 * 13 12 2 41 41 H 0.96998 * 119.99705 * 0.02562 * 18 16 14 42 42 H 1.08997 * 109.47993 * 300.00271 * 19 18 16 43 43 H 1.08997 * 109.46955 * 60.00734 * 19 18 16 44 44 H 1.09001 * 111.30199 * 337.39906 * 22 20 19 45 45 H 1.08998 * 111.30332 * 102.02930 * 22 20 19 46 46 H 1.08995 * 110.94692 * 83.93261 * 25 23 22 47 47 H 1.08998 * 110.94826 * 320.22047 * 25 23 22 48 48 H 1.09000 * 110.15605 * 264.71641 * 26 25 23 49 49 H 1.09001 * 110.21436 * 142.99093 * 26 25 23 50 50 H 1.08998 * 110.39748 * 248.74636 * 27 26 25 51 51 H 1.09000 * 110.49888 * 126.39395 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6500 -1.5908 1.1314 6 6 1.7032 -0.2365 2.4827 7 7 0.9276 0.8188 2.6036 8 14 2.3591 -1.0933 4.0077 9 1 1.8627 -0.3943 5.2201 10 1 1.8915 -2.5026 4.0232 11 1 3.8437 -1.0643 3.9918 12 6 2.0400 -0.7212 -1.2492 13 7 1.5517 -0.0306 -2.4454 14 6 1.8769 -0.4913 -3.6695 15 8 2.5738 -1.4785 -3.7808 16 6 1.3783 0.2129 -4.8898 17 8 0.6810 1.1998 -4.7784 18 7 1.7031 -0.2481 -6.1139 19 6 1.2139 0.4419 -7.3100 20 6 1.7226 -0.2803 -8.5593 21 1 2.8086 -0.3665 -8.5232 22 6 1.2902 0.5026 -9.8426 23 6 0.9358 -0.6430 -10.7384 24 1 1.8600 -1.1510 -11.0139 25 6 0.0067 -0.6788 -11.9064 26 6 -0.3388 -2.2009 -11.9962 27 6 -0.0965 -2.7789 -10.5722 28 6 0.1806 -1.5603 -9.7034 29 1 -0.7521 -1.1056 -9.3693 30 8 1.1223 -1.6012 -8.6484 31 1 -0.3634 0.3959 0.9484 32 1 -0.3634 0.6234 -0.8170 33 1 -0.3634 -1.0192 -0.1314 34 1 3.1218 1.4454 -0.1332 35 1 1.5719 1.9934 -0.8157 36 1 1.7896 1.9164 0.9492 37 1 0.6201 1.2878 1.8122 38 1 3.1300 -0.7216 -1.2490 39 1 1.6767 -1.7489 -1.2493 40 1 0.9937 0.7578 -2.3564 41 1 2.2602 -1.0372 -6.2028 42 1 0.1239 0.4419 -7.3093 43 1 1.5773 1.4695 -7.3108 44 1 0.4243 1.1353 -9.6475 45 1 2.1180 1.0828 -10.2502 46 1 0.5072 -0.3388 -12.8130 47 1 -0.8876 -0.0871 -11.7113 48 1 0.3143 -2.6924 -12.7173 49 1 -1.3819 -2.3340 -12.2831 50 1 0.7646 -3.4472 -10.5750 51 1 -0.9831 -3.3046 -10.2177 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332767245.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:28:50 Heat of formation + Delta-G solvation = -130.567069 kcal Electronic energy + Delta-G solvation = -29502.666180 eV Core-core repulsion = 25401.353587 eV Total energy + Delta-G solvation = -4101.312593 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.97256 -41.54956 -39.85844 -38.60747 -37.32107 -35.96128 -35.15250 -33.15083 -32.47778 -30.07903 -28.76365 -28.18488 -27.90207 -27.08921 -25.99446 -24.16805 -22.52136 -21.57100 -21.40912 -20.99214 -20.83297 -19.90966 -18.54212 -18.36580 -17.98406 -17.18692 -16.82168 -16.56688 -16.52515 -15.83942 -15.78903 -15.62377 -15.56528 -15.21466 -14.78241 -14.59715 -14.49123 -14.39636 -14.08978 -13.63476 -13.36753 -13.34840 -13.28522 -13.10673 -12.92391 -12.80060 -12.73008 -12.52831 -12.41861 -12.21974 -11.90698 -11.85355 -11.75275 -11.74872 -11.45579 -11.38735 -11.15320 -10.83091 -10.55204 -10.43122 -10.41180 -10.35968 -10.23508 -8.37732 -6.24684 0.26819 1.26098 1.58643 1.64080 1.83280 2.06681 2.31878 2.59355 2.69559 3.26377 3.35886 3.36226 3.53715 3.62707 3.90831 4.00850 4.02550 4.09595 4.20506 4.28274 4.30809 4.37822 4.43350 4.45247 4.55887 4.63343 4.65274 4.74118 4.79176 4.83734 4.88668 4.94054 4.94396 4.98988 5.04403 5.06737 5.11288 5.17413 5.18475 5.20150 5.24423 5.29395 5.44271 5.59776 5.77257 5.84609 5.92891 6.13992 6.28103 6.31549 6.64203 6.74441 6.87412 7.52442 8.89630 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.032544 B = 0.001798 C = 0.001767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.166683 B =15570.723878 C =15845.359013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.032 3.968 3 C -0.137 4.137 4 C -0.600 4.600 5 H 0.044 0.956 6 C -0.018 4.018 7 N -0.938 5.938 8 Si 1.106 2.894 9 H -0.287 1.287 10 H -0.277 1.277 11 H -0.276 1.276 12 C 0.152 3.848 13 N -0.683 5.683 14 C 0.498 3.502 15 O -0.550 6.550 16 C 0.513 3.487 17 O -0.542 6.542 18 N -0.684 5.684 19 C 0.105 3.895 20 C 0.067 3.933 21 H 0.110 0.890 22 C -0.118 4.118 23 C -0.135 4.135 24 H 0.073 0.927 25 C -0.100 4.100 26 C -0.115 4.115 27 C -0.120 4.120 28 C 0.045 3.955 29 H 0.066 0.934 30 O -0.385 6.385 31 H 0.052 0.948 32 H 0.042 0.958 33 H 0.033 0.967 34 H 0.036 0.964 35 H 0.043 0.957 36 H 0.050 0.950 37 H 0.278 0.722 38 H 0.056 0.944 39 H 0.053 0.947 40 H 0.413 0.587 41 H 0.419 0.581 42 H 0.070 0.930 43 H 0.099 0.901 44 H 0.089 0.911 45 H 0.109 0.891 46 H 0.084 0.916 47 H 0.075 0.925 48 H 0.077 0.923 49 H 0.078 0.922 50 H 0.067 0.933 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.975 -0.754 -32.257 32.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.032 3.968 3 C -0.195 4.195 4 C -0.638 4.638 5 H 0.062 0.938 6 C -0.217 4.217 7 N -0.579 5.579 8 Si 0.930 3.070 9 H -0.212 1.212 10 H -0.203 1.203 11 H -0.201 1.201 12 C 0.029 3.971 13 N -0.335 5.335 14 C 0.278 3.722 15 O -0.429 6.429 16 C 0.294 3.706 17 O -0.420 6.420 18 N -0.336 5.336 19 C -0.018 4.018 20 C 0.010 3.990 21 H 0.128 0.872 22 C -0.156 4.156 23 C -0.154 4.154 24 H 0.092 0.908 25 C -0.138 4.138 26 C -0.153 4.153 27 C -0.157 4.157 28 C -0.013 4.013 29 H 0.084 0.916 30 O -0.305 6.305 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.052 0.948 34 H 0.055 0.945 35 H 0.062 0.938 36 H 0.069 0.931 37 H 0.094 0.906 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.251 0.749 41 H 0.256 0.744 42 H 0.088 0.912 43 H 0.117 0.883 44 H 0.108 0.892 45 H 0.127 0.873 46 H 0.103 0.897 47 H 0.094 0.906 48 H 0.096 0.904 49 H 0.097 0.903 50 H 0.086 0.914 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.971 -0.914 -30.486 30.515 hybrid contribution -0.042 -0.107 -1.190 1.195 sum -1.013 -1.021 -31.676 31.708 Atomic orbital electron populations 1.21952 0.97631 0.99526 1.00586 1.18578 0.92905 0.93260 0.92090 1.21931 0.99375 0.97725 1.00503 1.22024 1.35265 1.13996 0.92538 0.93773 1.26816 0.94537 0.96613 1.03777 1.70936 1.32557 1.19628 1.34824 0.83046 0.76139 0.75027 0.72773 1.21235 1.20285 1.20132 1.21411 0.97954 0.95295 0.82465 1.46023 1.50960 1.31520 1.04951 1.20377 0.81624 0.84860 0.85321 1.90724 1.38481 1.26603 1.87090 1.19945 0.81201 0.84411 0.85079 1.90745 1.37863 1.26319 1.87029 1.45680 1.51738 1.31914 1.04297 1.22112 1.00112 0.97072 0.82469 1.24013 0.99006 0.82246 0.93740 0.87212 1.22021 1.03932 0.97191 0.92461 1.22102 0.99883 0.97120 0.96277 0.90817 1.21333 0.98830 0.96488 0.97113 1.22848 1.02737 0.94831 0.94892 1.22061 1.02180 0.96415 0.95085 1.23543 0.92601 0.98425 0.86753 0.91648 1.88509 1.56337 1.31297 1.54378 0.92948 0.93919 0.94767 0.94519 0.93819 0.93138 0.90600 0.92595 0.92844 0.74904 0.74402 0.91185 0.88322 0.89218 0.87304 0.89697 0.90623 0.90427 0.90290 0.91413 0.91111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.31 7.88 71.98 0.57 -5.74 16 2 C 0.03 1.52 0.50 -52.93 -0.03 1.49 16 3 C -0.14 -6.16 7.88 71.98 0.57 -5.60 16 4 C -0.60 -32.06 8.01 25.60 0.21 -31.85 16 5 H 0.04 2.38 7.74 -2.91 -0.02 2.35 16 6 C -0.02 -0.97 5.10 84.65 0.43 -0.54 16 7 N -0.94 -53.57 12.12 21.45 0.26 -53.31 16 8 Si 1.11 49.23 29.90 68.60 2.05 51.28 16 9 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 10 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 11 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 12 C 0.15 6.42 4.49 86.38 0.39 6.81 16 13 N -0.68 -25.14 5.03 -464.40 -2.34 -27.47 16 14 C 0.50 17.51 7.89 87.27 0.69 18.20 16 15 O -0.55 -21.41 16.48 -3.24 -0.05 -21.46 16 16 C 0.51 15.56 7.89 87.27 0.69 16.25 16 17 O -0.54 -18.16 16.48 -3.24 -0.05 -18.22 16 18 N -0.68 -16.07 5.53 -464.41 -2.57 -18.64 16 19 C 0.11 1.83 5.28 86.38 0.46 2.29 16 20 C 0.07 0.91 3.53 31.79 0.11 1.02 16 21 H 0.11 1.27 8.14 -2.38 -0.02 1.25 16 22 C -0.12 -1.00 6.41 30.72 0.20 -0.80 16 23 C -0.14 -1.31 2.65 -11.42 -0.03 -1.35 16 24 H 0.07 0.81 8.10 -2.39 -0.02 0.79 16 25 C -0.10 -0.69 6.72 30.57 0.21 -0.48 16 26 C -0.12 -0.88 6.94 32.64 0.23 -0.65 16 27 C -0.12 -1.47 6.72 31.22 0.21 -1.26 16 28 C 0.04 0.65 3.79 31.95 0.12 0.78 16 29 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 30 O -0.39 -7.35 11.10 -148.65 -1.65 -9.00 16 31 H 0.05 2.63 5.20 -2.38 -0.01 2.62 16 32 H 0.04 1.68 7.05 -2.39 -0.02 1.66 16 33 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 35 H 0.04 1.70 7.05 -2.39 -0.02 1.68 16 36 H 0.05 2.51 5.25 -2.39 -0.01 2.50 16 37 H 0.28 15.52 3.56 -92.71 -0.33 15.19 16 38 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 39 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 40 H 0.41 14.62 5.77 -92.71 -0.53 14.09 16 41 H 0.42 9.55 7.94 -92.71 -0.74 8.81 16 42 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.09 0.68 7.91 -2.39 -0.02 0.66 16 45 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 46 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 47 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 48 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 49 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 50 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 51 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -65.81 397.35 0.77 -65.05 By element: Atomic # 1 Polarization: 33.10 SS G_CDS: 0.11 Total: 33.21 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: 5.01 Total: -1.43 kcal Atomic # 7 Polarization: -94.78 SS G_CDS: -4.64 Total: -99.42 kcal Atomic # 8 Polarization: -46.92 SS G_CDS: -1.76 Total: -48.68 kcal Atomic # 14 Polarization: 49.23 SS G_CDS: 2.05 Total: 51.28 kcal Total: -65.81 0.77 -65.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332767245.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.521 kcal (2) G-P(sol) polarization free energy of solvation -65.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds