Wall clock time and date at job start Sat Apr 11 2020 05:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47785 * 2 1 4 4 C 1.53002 * 109.46718 * 240.00076 * 2 1 3 5 5 O 1.45194 * 109.47130 * 120.00611 * 2 1 3 6 6 C 1.34634 * 117.00434 * 59.99293 * 5 2 1 7 7 O 1.21512 * 120.00085 * 0.02562 * 6 5 2 8 8 N 1.34779 * 120.00716 * 180.02562 * 6 5 2 9 9 C 1.45586 * 119.37647 * 359.97438 * 8 6 5 10 10 C 1.51922 * 112.13190 * 139.85197 * 9 8 6 11 11 N 1.45310 * 112.35971 * 49.23701 * 10 9 8 12 12 C 1.34775 * 118.97689 * 139.54657 * 11 10 9 13 13 O 1.21282 * 120.00429 * 180.98149 * 12 11 10 14 14 C 1.50705 * 119.99830 * 0.96931 * 12 11 10 15 15 C 1.53001 * 109.47195 * 180.02562 * 14 12 11 16 16 C 1.52996 * 109.47180 * 180.02562 * 15 14 12 17 17 C 1.50700 * 109.47077 * 180.02562 * 16 15 14 18 18 H 1.07998 * 120.00047 * 359.97438 * 17 16 15 19 19 C 1.37883 * 119.99811 * 180.02562 * 17 16 15 20 20 N 1.31511 * 119.99726 * 179.97438 * 19 17 16 21 21 Si 1.86796 * 120.00055 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.47209 * 90.00353 * 21 19 17 23 23 H 1.48503 * 109.47245 * 210.00544 * 21 19 17 24 24 H 1.48505 * 109.47129 * 330.00178 * 21 19 17 25 25 C 1.46079 * 121.82508 * 320.54554 * 11 10 9 26 26 H 1.09002 * 115.45829 * 160.07036 * 25 11 10 27 27 C 1.52489 * 118.76764 * 307.41375 * 25 11 10 28 28 C 1.46616 * 119.38765 * 180.02562 * 8 6 5 29 29 H 1.08994 * 115.87947 * 50.85977 * 28 8 6 30 30 H 1.09007 * 109.46641 * 300.00278 * 1 2 3 31 31 H 1.09005 * 109.46738 * 59.99076 * 1 2 3 32 32 H 1.08996 * 109.47992 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47565 * 180.02562 * 3 2 1 34 34 H 1.09004 * 109.47078 * 300.00673 * 3 2 1 35 35 H 1.09007 * 109.47257 * 60.00099 * 3 2 1 36 36 H 1.09001 * 109.47125 * 300.00269 * 4 2 1 37 37 H 1.08998 * 109.47297 * 60.00155 * 4 2 1 38 38 H 1.09001 * 109.47315 * 180.02562 * 4 2 1 39 39 H 1.08995 * 108.95052 * 260.53139 * 9 8 6 40 40 H 1.09000 * 108.95034 * 19.17130 * 9 8 6 41 41 H 1.08996 * 108.94774 * 170.34267 * 10 9 8 42 42 H 1.09009 * 108.94774 * 288.96838 * 10 9 8 43 43 H 1.08989 * 109.47418 * 300.00976 * 14 12 11 44 44 H 1.09003 * 109.46601 * 60.01095 * 14 12 11 45 45 H 1.09002 * 109.47377 * 300.00907 * 15 14 12 46 46 H 1.09003 * 109.46689 * 60.00858 * 15 14 12 47 47 H 1.09004 * 109.47089 * 299.99879 * 16 15 14 48 48 H 1.09000 * 109.47119 * 59.99982 * 16 15 14 49 49 H 0.96998 * 120.00077 * 179.97438 * 20 19 17 50 50 H 1.09000 * 117.48074 * 358.29165 * 27 25 11 51 51 H 1.08999 * 117.49268 * 213.35028 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 8 2.0140 -0.6846 1.1854 6 6 1.6522 -1.9724 1.3382 7 8 0.9514 -2.5097 0.5035 8 7 2.0671 -2.6656 2.4170 9 6 2.9067 -2.0087 3.4085 10 6 2.5268 -2.3963 4.8274 11 7 2.4070 -3.8349 4.9943 12 6 2.8816 -4.4033 6.1203 13 8 2.8075 -5.6045 6.2711 14 6 3.5047 -3.5465 7.1921 15 6 3.9584 -4.4326 8.3539 16 6 4.5904 -3.5626 9.4423 17 6 5.0378 -4.4355 10.5864 18 1 4.8862 -5.5038 10.5418 19 6 5.6399 -3.8700 11.6904 20 7 6.0299 -4.6317 12.6890 21 14 5.9015 -2.0221 11.7677 22 1 4.7177 -1.3802 12.3937 23 1 7.1108 -1.7268 12.5774 24 1 6.0842 -1.4901 10.3933 25 6 1.8066 -4.6821 3.9669 26 1 2.0615 -5.7404 4.0244 27 6 0.4234 -4.3225 3.4352 28 6 1.6655 -4.0674 2.5695 29 1 1.8422 -4.7095 1.7067 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5140 -0.8900 32 1 -0.3635 -1.0276 -0.0005 33 1 3.1301 1.4423 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6769 1.9563 0.8900 36 1 1.6765 -1.7489 -1.2493 37 1 1.6766 -0.2074 -2.1393 38 1 3.1299 -0.7217 -1.2492 39 1 3.9459 -2.2862 3.2320 40 1 2.8065 -0.9290 3.2977 41 1 3.2855 -2.0185 5.5127 42 1 1.5690 -1.9384 5.0751 43 1 4.3649 -3.0185 6.7808 44 1 2.7721 -2.8235 7.5508 45 1 3.0983 -4.9609 8.7653 46 1 4.6912 -5.1553 7.9950 47 1 5.4505 -3.0340 9.0311 48 1 3.8574 -2.8401 9.8011 49 1 6.4537 -4.2340 13.4656 50 1 -0.0731 -3.4555 3.8708 51 1 -0.2327 -5.1428 3.1442 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335158069.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:28:56 Heat of formation + Delta-G solvation = -85.704373 kcal Electronic energy + Delta-G solvation = -29990.045471 eV Core-core repulsion = 25890.678270 eV Total energy + Delta-G solvation = -4099.367201 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.47407 -40.42895 -38.62854 -36.99180 -35.21277 -34.65373 -34.25476 -33.81157 -32.05374 -29.31218 -28.45241 -27.82110 -27.77670 -24.73617 -24.17914 -23.78913 -22.06322 -21.12046 -20.27939 -19.84695 -18.85846 -18.05805 -17.43176 -16.83797 -16.76849 -16.58876 -16.37314 -15.96936 -15.20527 -15.16006 -14.75230 -14.63750 -14.37487 -14.02455 -13.88864 -13.77910 -13.20592 -12.91421 -12.67275 -12.64440 -12.60440 -12.47726 -12.32611 -12.30787 -12.16429 -11.97917 -11.85434 -11.74941 -11.67283 -11.30662 -11.11364 -10.98269 -10.81233 -10.74750 -10.37100 -10.04925 -9.88199 -9.72626 -9.51253 -9.18637 -9.15169 -8.67005 -8.52677 -6.02090 -4.00068 1.59305 2.42392 2.58614 2.66983 3.28947 3.29938 3.37155 3.39320 3.53213 4.10911 4.25982 4.29560 4.34404 4.44959 4.45346 4.48369 4.54232 4.69704 4.77444 4.91081 5.05581 5.08163 5.12869 5.20933 5.27898 5.30923 5.33513 5.37466 5.42535 5.44417 5.45623 5.46911 5.51870 5.57987 5.66735 5.88199 5.89038 5.98217 6.03377 6.08297 6.33361 6.51019 6.64062 6.87814 6.88218 7.17712 7.34587 7.42147 7.80581 7.95397 8.17131 8.57406 9.04616 9.59641 11.11551 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.018067 B = 0.002168 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.453704 B =12910.446912 C =14134.536157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.136 3.864 3 C -0.141 4.141 4 C -0.183 4.183 5 O -0.362 6.362 6 C 0.655 3.345 7 O -0.560 6.560 8 N -0.568 5.568 9 C 0.100 3.900 10 C 0.094 3.906 11 N -0.594 5.594 12 C 0.518 3.482 13 O -0.523 6.523 14 C -0.141 4.141 15 C -0.088 4.088 16 C -0.014 4.014 17 C -0.519 4.519 18 H 0.073 0.927 19 C 0.064 3.936 20 N -0.904 5.904 21 Si 0.882 3.118 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.266 1.266 25 C 0.101 3.899 26 H 0.149 0.851 27 C -0.189 4.189 28 C 0.084 3.916 29 H 0.137 0.863 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.087 0.913 33 H 0.067 0.933 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.087 0.913 37 H 0.070 0.930 38 H 0.060 0.940 39 H 0.073 0.927 40 H 0.105 0.895 41 H 0.109 0.891 42 H 0.068 0.932 43 H 0.091 0.909 44 H 0.090 0.910 45 H 0.061 0.939 46 H 0.062 0.938 47 H 0.015 0.985 48 H 0.011 0.989 49 H 0.262 0.738 50 H 0.100 0.900 51 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.535 12.505 -29.302 33.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.099 3.901 3 C -0.198 4.198 4 C -0.241 4.241 5 O -0.277 6.277 6 C 0.411 3.589 7 O -0.448 6.448 8 N -0.307 5.307 9 C -0.023 4.023 10 C -0.030 4.030 11 N -0.327 5.327 12 C 0.308 3.692 13 O -0.397 6.397 14 C -0.181 4.181 15 C -0.126 4.126 16 C -0.051 4.051 17 C -0.557 4.557 18 H 0.091 0.909 19 C -0.137 4.137 20 N -0.543 5.543 21 Si 0.709 3.291 22 H -0.204 1.204 23 H -0.215 1.215 24 H -0.190 1.190 25 C -0.005 4.005 26 H 0.166 0.834 27 C -0.229 4.229 28 C -0.021 4.021 29 H 0.154 0.846 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.106 0.894 33 H 0.086 0.914 34 H 0.099 0.901 35 H 0.086 0.914 36 H 0.106 0.894 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.092 0.908 40 H 0.123 0.877 41 H 0.127 0.873 42 H 0.086 0.914 43 H 0.109 0.891 44 H 0.109 0.891 45 H 0.080 0.920 46 H 0.080 0.920 47 H 0.034 0.966 48 H 0.029 0.971 49 H 0.072 0.928 50 H 0.118 0.882 51 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -10.677 11.789 -29.318 33.354 hybrid contribution 0.109 1.179 0.090 1.188 sum -10.568 12.969 -29.228 33.677 Atomic orbital electron populations 1.22516 0.93921 1.05071 1.02549 1.22101 0.94414 0.91545 0.82015 1.21866 1.02341 0.92387 1.03226 1.22515 1.01608 1.03473 0.96462 1.86292 1.71525 1.23401 1.46506 1.17914 0.78636 0.80543 0.81856 1.90901 1.40682 1.70284 1.42962 1.45823 1.52973 1.10497 1.21436 1.21475 0.94730 0.98802 0.87298 1.21482 1.03535 0.81057 0.96941 1.47028 1.60372 1.06873 1.18442 1.21300 0.76856 0.89169 0.81907 1.90701 1.55522 1.15325 1.78175 1.21952 1.01065 0.99603 0.95437 1.21294 1.00848 0.97465 0.92998 1.19603 0.95364 0.95783 0.94384 1.21150 1.38496 0.95625 1.00437 0.90930 1.25063 0.95152 0.97978 0.95516 1.69921 1.41397 1.35377 1.07569 0.86757 0.77758 0.86272 0.78312 1.20366 1.21457 1.19043 1.21924 0.96947 0.96355 0.85225 0.83363 1.23911 0.91972 1.04447 1.02586 1.22199 1.02423 0.81301 0.96136 0.84560 0.92142 0.91093 0.89399 0.91377 0.90081 0.91381 0.89419 0.91085 0.92129 0.90840 0.87695 0.87311 0.91410 0.89102 0.89137 0.91995 0.91964 0.96647 0.97084 0.92781 0.88177 0.86800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.37 8.37 37.16 0.31 -1.06 16 2 C 0.14 1.03 1.13 -90.62 -0.10 0.93 16 3 C -0.14 -0.73 8.85 37.15 0.33 -0.40 16 4 C -0.18 -1.37 8.37 37.16 0.31 -1.06 16 5 O -0.36 -3.38 8.46 -40.31 -0.34 -3.72 16 6 C 0.66 7.01 7.68 54.06 0.42 7.42 16 7 O -0.56 -7.01 11.84 -19.28 -0.23 -7.23 16 8 N -0.57 -5.45 3.06 -172.65 -0.53 -5.98 16 9 C 0.10 0.78 6.36 -5.08 -0.03 0.75 16 10 C 0.09 0.78 6.01 -5.23 -0.03 0.75 16 11 N -0.59 -6.73 3.13 -168.12 -0.53 -7.25 16 12 C 0.52 7.64 7.64 -10.98 -0.08 7.56 16 13 O -0.52 -9.77 15.53 5.56 0.09 -9.68 16 14 C -0.14 -2.04 4.06 -27.88 -0.11 -2.15 16 15 C -0.09 -1.75 4.44 -26.73 -0.12 -1.87 16 16 C -0.01 -0.32 4.04 -27.89 -0.11 -0.44 16 17 C -0.52 -14.92 9.66 -34.44 -0.33 -15.25 16 18 H 0.07 2.28 7.99 -52.49 -0.42 1.86 16 19 C 0.06 1.87 5.47 -17.82 -0.10 1.77 16 20 N -0.90 -28.07 13.96 55.43 0.77 -27.30 16 21 Si 0.88 21.40 27.47 -169.99 -4.67 16.73 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.27 -6.06 6.54 56.52 0.37 -5.69 16 25 C 0.10 1.06 6.19 -68.26 -0.42 0.64 16 26 H 0.15 1.63 7.46 -51.93 -0.39 1.25 16 27 C -0.19 -1.73 10.17 -26.72 -0.27 -2.00 16 28 C 0.08 0.79 5.92 -67.43 -0.40 0.39 16 29 H 0.14 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.09 0.86 5.88 -51.93 -0.31 0.56 16 33 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.09 0.85 5.88 -51.93 -0.31 0.55 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.10 0.69 6.95 -51.93 -0.36 0.33 16 41 H 0.11 0.76 5.87 -51.93 -0.30 0.46 16 42 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 43 H 0.09 1.12 7.36 -51.94 -0.38 0.74 16 44 H 0.09 1.14 8.08 -51.93 -0.42 0.72 16 45 H 0.06 1.32 8.10 -51.93 -0.42 0.89 16 46 H 0.06 1.32 8.10 -51.93 -0.42 0.90 16 47 H 0.02 0.35 7.20 -51.93 -0.37 -0.03 16 48 H 0.01 0.25 7.57 -51.93 -0.39 -0.15 16 49 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 50 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 51 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 401.02 15.07 6.04 6.04 Total: -1.00 -34.95 401.02 -8.87 -43.82 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -8.73 Total: -1.39 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: -0.75 Total: -4.03 kcal Atomic # 7 Polarization: -40.25 SS G_CDS: -0.28 Total: -40.53 kcal Atomic # 8 Polarization: -20.15 SS G_CDS: -0.48 Total: -20.64 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.67 Total: 16.73 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.95 -8.87 -43.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335158069.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.880 kcal (2) G-P(sol) polarization free energy of solvation -34.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds