Wall clock time and date at job start Sat Apr 11 2020 05:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46722 * 2 1 4 4 C 1.53002 * 109.46966 * 240.00373 * 2 1 3 5 5 O 1.45194 * 109.47324 * 120.00072 * 2 1 3 6 6 C 1.34634 * 117.00060 * 59.99943 * 5 2 1 7 7 O 1.21506 * 120.00396 * 0.02562 * 6 5 2 8 8 N 1.34784 * 119.99762 * 179.97438 * 6 5 2 9 9 C 1.46925 * 120.62803 * 180.02562 * 8 6 5 10 10 C 1.53195 * 108.77693 * 233.63272 * 9 8 6 11 11 C 1.53038 * 109.31278 * 305.36850 * 10 9 8 12 12 C 1.53002 * 109.46025 * 181.38447 * 11 10 9 13 13 C 1.50699 * 115.56072 * 150.88647 * 12 11 10 14 14 O 1.21299 * 120.00026 * 20.13114 * 13 12 11 15 15 N 1.34774 * 120.00007 * 200.12312 * 13 12 11 16 16 C 1.37092 * 120.00029 * 180.02562 * 15 13 12 17 17 H 1.07999 * 119.99995 * 0.02562 * 16 15 13 18 18 C 1.38949 * 120.00015 * 179.97438 * 16 15 13 19 19 N 1.31414 * 120.00087 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00156 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47128 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47397 * 120.00083 * 20 18 16 23 23 H 1.48506 * 109.47292 * 240.00319 * 20 18 16 24 24 C 1.52999 * 117.49769 * 296.57625 * 12 11 10 25 25 C 1.52997 * 60.03272 * 107.47807 * 24 12 11 26 26 C 1.53039 * 109.54012 * 61.36130 * 11 10 9 27 27 C 1.46921 * 120.63214 * 0.02777 * 8 6 5 28 28 H 1.08998 * 109.47204 * 299.99387 * 1 2 3 29 29 H 1.08997 * 109.47359 * 60.00211 * 1 2 3 30 30 H 1.09005 * 109.46626 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46803 * 180.02562 * 3 2 1 32 32 H 1.08997 * 109.47031 * 299.99990 * 3 2 1 33 33 H 1.08995 * 109.47202 * 60.00054 * 3 2 1 34 34 H 1.09000 * 109.46925 * 299.99552 * 4 2 1 35 35 H 1.08997 * 109.47558 * 59.99538 * 4 2 1 36 36 H 1.09000 * 109.46537 * 180.02562 * 4 2 1 37 37 H 1.09003 * 109.58654 * 113.84858 * 9 8 6 38 38 H 1.08999 * 109.58674 * 353.42370 * 9 8 6 39 39 H 1.08998 * 109.49578 * 185.41319 * 10 9 8 40 40 H 1.08997 * 109.52311 * 65.33345 * 10 9 8 41 41 H 1.09004 * 109.46038 * 301.35735 * 11 10 9 42 42 H 0.96998 * 120.00115 * 0.02562 * 15 13 12 43 43 H 0.96998 * 119.99861 * 179.97438 * 19 18 16 44 44 H 1.08995 * 117.49930 * 214.98103 * 24 12 11 45 45 H 1.09000 * 117.49839 * 359.97393 * 24 12 11 46 46 H 1.08998 * 117.50171 * 107.49970 * 25 24 12 47 47 H 1.09001 * 117.49920 * 252.52848 * 25 24 12 48 48 H 1.09002 * 109.49520 * 58.58565 * 26 11 10 49 49 H 1.08995 * 109.50174 * 178.68507 * 26 11 10 50 50 H 1.08997 * 109.58773 * 246.15505 * 27 8 6 51 51 H 1.09000 * 109.58863 * 6.58235 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3383 7 8 0.9517 -2.5097 0.5036 8 7 2.0682 -2.6657 2.4166 9 6 1.6822 -4.0718 2.5969 10 6 1.0413 -4.2339 3.9789 11 6 2.0004 -3.7034 5.0470 12 6 1.3780 -3.8952 6.4315 13 6 2.3551 -4.0845 7.5631 14 8 3.5067 -3.7252 7.4364 15 7 1.9493 -4.6527 8.7158 16 6 2.8381 -4.8244 9.7454 17 1 3.8633 -4.5039 9.6330 18 6 2.4196 -5.4098 10.9341 19 7 1.1720 -5.7993 11.0712 20 14 3.6304 -5.6431 12.3373 21 1 4.9622 -5.1253 11.9331 22 1 3.1524 -4.9019 13.5321 23 1 3.7394 -7.0881 12.6621 24 6 0.0834 -3.1385 6.7350 25 6 0.0495 -4.6515 6.5104 26 6 2.2609 -2.2146 4.8070 27 6 2.9161 -2.0298 3.4341 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1299 1.4426 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 1.6767 -1.7489 -1.2493 35 1 1.6766 -0.2074 -2.1393 36 1 3.1300 -0.7215 -1.2490 37 1 2.5666 -4.7052 2.5278 38 1 0.9657 -4.3557 1.8262 39 1 0.8378 -5.2886 4.1641 40 1 0.1084 -3.6714 4.0160 41 1 2.9420 -4.2499 4.9932 42 1 1.0285 -4.9402 8.8170 43 1 0.8800 -6.2083 11.9008 44 1 -0.0616 -2.7775 7.7532 45 1 -0.3247 -2.5036 5.9486 46 1 -0.1178 -5.2859 7.3808 47 1 -0.3805 -5.0121 5.5759 48 1 1.3167 -1.6707 4.8359 49 1 2.9255 -1.8320 5.5816 50 1 3.9009 -2.4970 3.4331 51 1 3.0137 -0.9663 3.2159 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346385624.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:28:58 Heat of formation + Delta-G solvation = -100.876257 kcal Electronic energy + Delta-G solvation = -30721.340119 eV Core-core repulsion = 26621.315016 eV Total energy + Delta-G solvation = -4100.025103 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.02324 -39.80305 -38.14636 -36.77154 -35.70048 -34.23961 -33.99230 -32.02555 -31.10781 -30.92772 -27.64876 -27.59952 -26.09695 -25.33933 -23.93336 -22.95250 -21.86980 -21.66322 -20.21840 -19.23238 -18.36052 -18.07314 -17.60138 -16.78232 -16.30808 -15.99032 -15.46661 -15.28836 -14.69396 -14.64438 -14.45171 -14.03214 -13.90071 -13.78290 -13.59636 -13.33950 -13.06395 -13.00373 -12.76236 -12.41054 -12.36963 -12.31336 -12.12210 -12.03525 -11.68294 -11.59864 -11.49431 -11.39219 -11.21304 -11.13780 -11.02733 -10.76834 -10.53852 -10.38234 -10.33626 -10.24718 -10.10178 -9.99091 -9.62223 -9.37033 -8.78605 -8.33997 -7.99903 -6.45273 -3.85617 2.05726 2.76566 3.12231 3.24862 3.31879 3.56821 3.71508 4.13531 4.41519 4.48602 4.52946 4.66979 4.70614 4.76323 4.94222 4.99023 5.07119 5.14294 5.21751 5.23266 5.27776 5.29256 5.37082 5.44109 5.45285 5.50715 5.52256 5.62267 5.62925 5.69129 5.72139 5.76058 5.88253 5.91306 5.98918 6.02773 6.05938 6.09315 6.13154 6.25841 6.35406 6.39144 6.43068 6.49841 6.58942 6.67469 7.31512 7.52221 8.03804 8.26389 8.57753 9.14496 9.52357 10.03400 10.72521 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.027713 B = 0.002274 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.113488 B =12307.660312 C =12598.822596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.135 3.865 3 C -0.141 4.141 4 C -0.182 4.182 5 O -0.362 6.362 6 C 0.653 3.347 7 O -0.576 6.576 8 N -0.592 5.592 9 C 0.128 3.872 10 C -0.133 4.133 11 C -0.032 4.032 12 C -0.128 4.128 13 C 0.475 3.525 14 O -0.591 6.591 15 N -0.559 5.559 16 C -0.299 4.299 17 H 0.104 0.896 18 C 0.022 3.978 19 N -0.900 5.900 20 Si 0.929 3.071 21 H -0.268 1.268 22 H -0.281 1.281 23 H -0.281 1.281 24 C -0.161 4.161 25 C -0.177 4.177 26 C -0.123 4.123 27 C 0.112 3.888 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.068 0.932 36 H 0.058 0.942 37 H 0.072 0.928 38 H 0.094 0.906 39 H 0.083 0.917 40 H 0.068 0.932 41 H 0.085 0.915 42 H 0.392 0.608 43 H 0.271 0.729 44 H 0.097 0.903 45 H 0.094 0.906 46 H 0.100 0.900 47 H 0.102 0.898 48 H 0.063 0.937 49 H 0.088 0.912 50 H 0.072 0.928 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.067 9.251 -20.399 22.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.098 3.902 3 C -0.198 4.198 4 C -0.240 4.240 5 O -0.277 6.277 6 C 0.408 3.592 7 O -0.466 6.466 8 N -0.332 5.332 9 C 0.007 3.993 10 C -0.171 4.171 11 C -0.051 4.051 12 C -0.131 4.131 13 C 0.261 3.739 14 O -0.477 6.477 15 N -0.195 5.195 16 C -0.429 4.429 17 H 0.122 0.878 18 C -0.180 4.180 19 N -0.542 5.542 20 Si 0.756 3.244 21 H -0.192 1.192 22 H -0.207 1.207 23 H -0.207 1.207 24 C -0.199 4.199 25 C -0.214 4.214 26 C -0.161 4.161 27 C -0.010 4.010 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.106 0.894 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.106 0.894 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.090 0.910 38 H 0.113 0.887 39 H 0.102 0.898 40 H 0.087 0.913 41 H 0.103 0.897 42 H 0.227 0.773 43 H 0.081 0.919 44 H 0.115 0.885 45 H 0.112 0.888 46 H 0.118 0.882 47 H 0.120 0.880 48 H 0.081 0.919 49 H 0.107 0.893 50 H 0.091 0.909 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.594 9.300 -20.599 22.749 hybrid contribution -0.103 -0.322 0.953 1.011 sum -2.697 8.978 -19.645 21.767 Atomic orbital electron populations 1.22507 0.94064 1.05052 1.02358 1.22043 0.94345 0.91526 0.82268 1.21854 1.02252 0.92609 1.03066 1.22507 1.01499 1.03511 0.96439 1.86307 1.71486 1.23756 1.46128 1.17966 0.78668 0.80457 0.82070 1.90861 1.41828 1.70485 1.43433 1.47065 1.52743 1.12261 1.21108 1.21688 1.00530 0.78925 0.98187 1.22190 0.99159 1.02240 0.93538 1.20317 0.98662 0.96095 0.90020 1.21610 0.88974 1.06342 0.96179 1.18833 0.87940 0.83870 0.83266 1.90498 1.19329 1.55639 1.82231 1.41894 1.12966 1.52712 1.11934 1.19773 0.94440 1.37063 0.91586 0.87825 1.25275 0.96786 0.96954 0.98947 1.69618 1.15565 1.41309 1.27659 0.85800 0.80298 0.77936 0.80318 1.19198 1.20732 1.20720 1.22986 0.99433 0.94600 1.02840 1.23275 0.99520 0.94844 1.03748 1.21928 1.01549 0.96655 0.95968 1.21825 0.93390 0.98566 0.87248 0.92181 0.91314 0.89379 0.91482 0.90267 0.91425 0.89386 0.91302 0.92250 0.90957 0.88746 0.89823 0.91329 0.89703 0.77296 0.91861 0.88492 0.88778 0.88169 0.88018 0.91852 0.89302 0.90947 0.89265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.74 8.37 37.16 0.31 -1.43 16 2 C 0.13 1.31 1.13 -90.62 -0.10 1.21 16 3 C -0.14 -1.01 8.85 37.16 0.33 -0.68 16 4 C -0.18 -1.70 8.37 37.16 0.31 -1.39 16 5 O -0.36 -4.38 8.53 -40.31 -0.34 -4.73 16 6 C 0.65 8.71 7.74 54.06 0.42 9.13 16 7 O -0.58 -8.49 11.29 -19.28 -0.22 -8.71 16 8 N -0.59 -7.34 2.97 -178.54 -0.53 -7.87 16 9 C 0.13 1.47 6.43 -3.71 -0.02 1.44 16 10 C -0.13 -1.58 3.93 -26.61 -0.10 -1.68 16 11 C -0.03 -0.47 1.90 -90.58 -0.17 -0.64 16 12 C -0.13 -2.20 2.13 -155.62 -0.33 -2.53 16 13 C 0.47 11.06 7.38 -10.99 -0.08 10.98 16 14 O -0.59 -15.64 15.95 5.54 0.09 -15.55 16 15 N -0.56 -14.06 5.23 -10.96 -0.06 -14.12 16 16 C -0.30 -8.26 9.68 -14.94 -0.14 -8.41 16 17 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 18 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 19 N -0.90 -24.27 13.05 55.50 0.72 -23.55 16 20 Si 0.93 20.86 29.55 -169.99 -5.02 15.83 16 21 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 22 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 23 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 24 C -0.16 -2.43 9.10 -26.73 -0.24 -2.68 16 25 C -0.18 -2.65 8.90 -26.69 -0.24 -2.89 16 26 C -0.12 -1.68 5.14 -26.59 -0.14 -1.81 16 27 C 0.11 1.34 6.45 -3.69 -0.02 1.31 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.09 1.04 5.88 -51.93 -0.31 0.74 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.09 1.02 5.88 -51.93 -0.31 0.72 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.09 1.10 7.00 -51.93 -0.36 0.73 16 39 H 0.08 0.93 7.06 -51.93 -0.37 0.56 16 40 H 0.07 0.81 7.25 -51.93 -0.38 0.44 16 41 H 0.08 1.40 7.83 -51.93 -0.41 1.00 16 42 H 0.39 9.48 5.95 -40.82 -0.24 9.24 16 43 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 44 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 45 H 0.09 1.23 7.10 -51.93 -0.37 0.86 16 46 H 0.10 1.65 6.59 -51.93 -0.34 1.31 16 47 H 0.10 1.26 5.82 -51.93 -0.30 0.96 16 48 H 0.06 0.84 7.14 -51.93 -0.37 0.47 16 49 H 0.09 1.39 8.11 -51.93 -0.42 0.97 16 50 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 51 H 0.09 1.00 6.93 -51.93 -0.36 0.64 16 LS Contribution 394.32 15.07 5.94 5.94 Total: -1.00 -31.25 394.32 -8.01 -39.27 By element: Atomic # 1 Polarization: 21.31 SS G_CDS: -8.27 Total: 13.04 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: -0.33 Total: 0.43 kcal Atomic # 7 Polarization: -45.67 SS G_CDS: 0.14 Total: -45.53 kcal Atomic # 8 Polarization: -28.51 SS G_CDS: -0.47 Total: -28.99 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.25 -8.01 -39.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346385624.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.608 kcal (2) G-P(sol) polarization free energy of solvation -31.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds