Wall clock time and date at job start Sat Apr 11 2020 05:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46722 * 2 1 4 4 C 1.53002 * 109.46966 * 240.00373 * 2 1 3 5 5 O 1.45194 * 109.47324 * 120.00072 * 2 1 3 6 6 C 1.34634 * 117.00060 * 59.99943 * 5 2 1 7 7 O 1.21506 * 120.00396 * 0.02562 * 6 5 2 8 8 N 1.34784 * 119.99762 * 179.97438 * 6 5 2 9 9 C 1.46925 * 120.62803 * 180.02562 * 8 6 5 10 10 C 1.53195 * 108.77693 * 233.63272 * 9 8 6 11 11 C 1.53038 * 109.31278 * 305.36850 * 10 9 8 12 12 C 1.53002 * 109.46025 * 181.38447 * 11 10 9 13 13 C 1.50699 * 115.56072 * 150.88647 * 12 11 10 14 14 O 1.21299 * 120.00026 * 20.13114 * 13 12 11 15 15 N 1.34774 * 120.00007 * 200.12312 * 13 12 11 16 16 C 1.37092 * 120.00029 * 180.02562 * 15 13 12 17 17 H 1.07999 * 119.99995 * 0.02562 * 16 15 13 18 18 C 1.38949 * 120.00015 * 179.97438 * 16 15 13 19 19 N 1.31414 * 120.00087 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00156 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47128 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47397 * 120.00083 * 20 18 16 23 23 H 1.48506 * 109.47292 * 240.00319 * 20 18 16 24 24 C 1.52999 * 117.49769 * 296.57625 * 12 11 10 25 25 C 1.52997 * 60.03272 * 107.47807 * 24 12 11 26 26 C 1.53039 * 109.54012 * 61.36130 * 11 10 9 27 27 C 1.46921 * 120.63214 * 0.02777 * 8 6 5 28 28 H 1.08998 * 109.47204 * 299.99387 * 1 2 3 29 29 H 1.08997 * 109.47359 * 60.00211 * 1 2 3 30 30 H 1.09005 * 109.46626 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46803 * 180.02562 * 3 2 1 32 32 H 1.08997 * 109.47031 * 299.99990 * 3 2 1 33 33 H 1.08995 * 109.47202 * 60.00054 * 3 2 1 34 34 H 1.09000 * 109.46925 * 299.99552 * 4 2 1 35 35 H 1.08997 * 109.47558 * 59.99538 * 4 2 1 36 36 H 1.09000 * 109.46537 * 180.02562 * 4 2 1 37 37 H 1.09003 * 109.58654 * 113.84858 * 9 8 6 38 38 H 1.08999 * 109.58674 * 353.42370 * 9 8 6 39 39 H 1.08998 * 109.49578 * 185.41319 * 10 9 8 40 40 H 1.08997 * 109.52311 * 65.33345 * 10 9 8 41 41 H 1.09004 * 109.46038 * 301.35735 * 11 10 9 42 42 H 0.96998 * 120.00115 * 0.02562 * 15 13 12 43 43 H 0.96998 * 119.99861 * 179.97438 * 19 18 16 44 44 H 1.08995 * 117.49930 * 214.98103 * 24 12 11 45 45 H 1.09000 * 117.49839 * 359.97393 * 24 12 11 46 46 H 1.08998 * 117.50171 * 107.49970 * 25 24 12 47 47 H 1.09001 * 117.49920 * 252.52848 * 25 24 12 48 48 H 1.09002 * 109.49520 * 58.58565 * 26 11 10 49 49 H 1.08995 * 109.50174 * 178.68507 * 26 11 10 50 50 H 1.08997 * 109.58773 * 246.15505 * 27 8 6 51 51 H 1.09000 * 109.58863 * 6.58235 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3383 7 8 0.9517 -2.5097 0.5036 8 7 2.0682 -2.6657 2.4166 9 6 1.6822 -4.0718 2.5969 10 6 1.0413 -4.2339 3.9789 11 6 2.0004 -3.7034 5.0470 12 6 1.3780 -3.8952 6.4315 13 6 2.3551 -4.0845 7.5631 14 8 3.5067 -3.7252 7.4364 15 7 1.9493 -4.6527 8.7158 16 6 2.8381 -4.8244 9.7454 17 1 3.8633 -4.5039 9.6330 18 6 2.4196 -5.4098 10.9341 19 7 1.1720 -5.7993 11.0712 20 14 3.6304 -5.6431 12.3373 21 1 4.9622 -5.1253 11.9331 22 1 3.1524 -4.9019 13.5321 23 1 3.7394 -7.0881 12.6621 24 6 0.0834 -3.1385 6.7350 25 6 0.0495 -4.6515 6.5104 26 6 2.2609 -2.2146 4.8070 27 6 2.9161 -2.0298 3.4341 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1299 1.4426 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 1.6767 -1.7489 -1.2493 35 1 1.6766 -0.2074 -2.1393 36 1 3.1300 -0.7215 -1.2490 37 1 2.5666 -4.7052 2.5278 38 1 0.9657 -4.3557 1.8262 39 1 0.8378 -5.2886 4.1641 40 1 0.1084 -3.6714 4.0160 41 1 2.9420 -4.2499 4.9932 42 1 1.0285 -4.9402 8.8170 43 1 0.8800 -6.2083 11.9008 44 1 -0.0616 -2.7775 7.7532 45 1 -0.3247 -2.5036 5.9486 46 1 -0.1178 -5.2859 7.3808 47 1 -0.3805 -5.0121 5.5759 48 1 1.3167 -1.6707 4.8359 49 1 2.9255 -1.8320 5.5816 50 1 3.9009 -2.4970 3.4331 51 1 3.0137 -0.9663 3.2159 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346385624.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:28:57 Heat of formation + Delta-G solvation = -119.136259 kcal Electronic energy + Delta-G solvation = -30722.131932 eV Core-core repulsion = 26621.315016 eV Total energy + Delta-G solvation = -4100.816916 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.99786 -41.15871 -39.42717 -38.02504 -36.93941 -36.01759 -35.03543 -33.44849 -32.62272 -32.10181 -28.32059 -28.26013 -27.53485 -26.97477 -25.05415 -24.24457 -23.05425 -22.80509 -21.36972 -20.32653 -20.07452 -19.59018 -18.74369 -17.71313 -17.63821 -17.23682 -16.98946 -16.34429 -16.15386 -15.62839 -15.50611 -15.46272 -15.26499 -15.01057 -14.75518 -14.61558 -14.32253 -14.21985 -13.78181 -13.52285 -13.47474 -13.19871 -13.07833 -12.97302 -12.85245 -12.82580 -12.67851 -12.46904 -12.38654 -12.31147 -12.23916 -12.13290 -12.09468 -11.90861 -11.57999 -11.46346 -11.34816 -11.29161 -11.03461 -10.69263 -10.22757 -10.03066 -9.75926 -8.49095 -5.97627 1.16983 1.33887 1.40173 1.54394 1.76979 1.89517 2.27832 2.82540 2.88616 3.12688 3.30371 3.61434 3.74920 3.79164 3.84314 3.86713 3.96623 3.99241 4.05789 4.15698 4.26802 4.38179 4.44908 4.49038 4.60844 4.65398 4.66099 4.74236 4.75290 4.80361 4.81770 4.86082 4.88603 4.91493 4.94181 5.03639 5.05044 5.13461 5.15258 5.22040 5.23813 5.32115 5.36652 5.39563 5.47530 5.49673 5.57433 5.99308 6.33595 6.57110 7.10112 7.29146 7.55166 8.09801 8.68688 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.027713 B = 0.002274 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.113488 B =12307.660312 C =12598.822596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.123 3.877 3 C -0.136 4.136 4 C -0.178 4.178 5 O -0.369 6.369 6 C 0.650 3.350 7 O -0.592 6.592 8 N -0.592 5.592 9 C 0.129 3.871 10 C -0.122 4.122 11 C -0.026 4.026 12 C -0.145 4.145 13 C 0.470 3.530 14 O -0.630 6.630 15 N -0.571 5.571 16 C -0.334 4.334 17 H 0.079 0.921 18 C -0.013 4.013 19 N -0.920 5.920 20 Si 0.993 3.007 21 H -0.273 1.273 22 H -0.270 1.270 23 H -0.270 1.270 24 C -0.145 4.145 25 C -0.159 4.159 26 C -0.116 4.116 27 C 0.120 3.880 28 H 0.059 0.941 29 H 0.090 0.910 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.102 0.898 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.090 0.910 36 H 0.059 0.941 37 H 0.079 0.921 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.078 0.922 41 H 0.060 0.940 42 H 0.395 0.605 43 H 0.278 0.722 44 H 0.081 0.919 45 H 0.125 0.875 46 H 0.083 0.917 47 H 0.138 0.862 48 H 0.072 0.928 49 H 0.062 0.938 50 H 0.073 0.927 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.163 9.936 -21.675 24.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.087 3.913 3 C -0.193 4.193 4 C -0.235 4.235 5 O -0.283 6.283 6 C 0.406 3.594 7 O -0.484 6.484 8 N -0.332 5.332 9 C 0.008 3.992 10 C -0.160 4.160 11 C -0.045 4.045 12 C -0.148 4.148 13 C 0.259 3.741 14 O -0.517 6.517 15 N -0.207 5.207 16 C -0.463 4.463 17 H 0.097 0.903 18 C -0.213 4.213 19 N -0.561 5.561 20 Si 0.817 3.183 21 H -0.198 1.198 22 H -0.196 1.196 23 H -0.195 1.195 24 C -0.183 4.183 25 C -0.196 4.196 26 C -0.154 4.154 27 C -0.002 4.002 28 H 0.078 0.922 29 H 0.109 0.891 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.121 0.879 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.109 0.891 36 H 0.078 0.922 37 H 0.097 0.903 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.096 0.904 41 H 0.079 0.921 42 H 0.231 0.769 43 H 0.088 0.912 44 H 0.099 0.901 45 H 0.143 0.857 46 H 0.102 0.898 47 H 0.155 0.845 48 H 0.091 0.909 49 H 0.080 0.920 50 H 0.091 0.909 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.713 9.985 -21.880 24.336 hybrid contribution 0.245 -0.496 1.308 1.420 sum -3.468 9.489 -20.572 22.919 Atomic orbital electron populations 1.22456 0.93928 1.03682 1.03445 1.22418 0.94650 0.92668 0.81611 1.21880 1.02353 0.90830 1.04240 1.22455 1.01483 1.02238 0.97313 1.86316 1.71551 1.23139 1.47317 1.18091 0.78500 0.80836 0.81994 1.90859 1.42561 1.70955 1.43988 1.47127 1.52603 1.12549 1.20927 1.21728 1.00952 0.78658 0.97886 1.22110 0.98498 1.02974 0.92384 1.20268 0.98215 0.96563 0.89462 1.21461 0.88806 1.09515 0.95060 1.19884 0.88544 0.81789 0.83907 1.90459 1.21535 1.56676 1.83075 1.41966 1.12788 1.53641 1.12330 1.19721 0.94132 1.39080 0.93395 0.90312 1.26056 0.98570 0.96029 1.00667 1.69677 1.16635 1.41238 1.28520 0.84867 0.77793 0.78328 0.77332 1.19768 1.19558 1.19539 1.23049 0.96892 0.95289 1.03025 1.23367 0.96923 0.94569 1.04714 1.21823 1.01467 0.95998 0.96119 1.21728 0.93125 0.99180 0.86193 0.92225 0.89104 0.91856 0.91355 0.87918 0.91419 0.91894 0.89072 0.92187 0.90266 0.88465 0.88516 0.90381 0.92122 0.76942 0.91249 0.90073 0.85690 0.89845 0.84460 0.90946 0.91957 0.90902 0.88376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.08 8.37 71.98 0.60 -2.48 16 2 C 0.12 2.18 1.13 -10.79 -0.01 2.16 16 3 C -0.14 -1.61 8.85 71.98 0.64 -0.98 16 4 C -0.18 -3.04 8.37 71.98 0.60 -2.44 16 5 O -0.37 -8.46 8.53 -55.44 -0.47 -8.93 16 6 C 0.65 16.62 7.74 129.79 1.00 17.62 16 7 O -0.59 -16.98 11.29 19.82 0.22 -16.75 16 8 N -0.59 -13.92 2.97 -949.17 -2.82 -16.74 16 9 C 0.13 2.73 6.43 86.36 0.56 3.29 16 10 C -0.12 -2.60 3.93 30.67 0.12 -2.48 16 11 C -0.03 -0.75 1.90 -10.77 -0.02 -0.77 16 12 C -0.15 -4.97 2.13 -52.90 -0.11 -5.08 16 13 C 0.47 22.67 7.38 87.66 0.65 23.32 16 14 O -0.63 -34.90 15.95 -3.09 -0.05 -34.95 16 15 N -0.57 -29.70 5.23 -306.99 -1.60 -31.30 16 16 C -0.33 -19.12 9.68 84.04 0.81 -18.31 16 17 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 18 C -0.01 -0.72 5.50 84.93 0.47 -0.26 16 19 N -0.92 -49.78 13.05 21.66 0.28 -49.49 16 20 Si 0.99 43.04 29.55 68.60 2.03 45.07 16 21 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 22 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 23 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 24 C -0.15 -4.16 9.10 30.59 0.28 -3.88 16 25 C -0.16 -4.48 8.90 30.62 0.27 -4.21 16 26 C -0.12 -3.11 5.14 30.69 0.16 -2.95 16 27 C 0.12 2.78 6.45 86.38 0.56 3.33 16 28 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.09 1.12 8.14 -2.39 -0.02 1.11 16 30 H 0.06 1.44 5.88 -2.38 -0.01 1.43 16 31 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.06 1.42 5.88 -2.39 -0.01 1.41 16 35 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.06 0.99 8.14 -2.39 -0.02 0.98 16 37 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.10 2.07 7.00 -2.39 -0.02 2.06 16 39 H 0.10 1.85 7.06 -2.39 -0.02 1.83 16 40 H 0.08 1.57 7.25 -2.39 -0.02 1.55 16 41 H 0.06 2.04 7.83 -2.38 -0.02 2.02 16 42 H 0.40 19.64 5.95 -92.71 -0.55 19.09 16 43 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 44 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 45 H 0.13 2.84 7.10 -2.39 -0.02 2.83 16 46 H 0.08 2.69 6.59 -2.39 -0.02 2.68 16 47 H 0.14 2.91 5.82 -2.39 -0.01 2.90 16 48 H 0.07 1.79 7.14 -2.39 -0.02 1.78 16 49 H 0.06 2.01 8.11 -2.39 -0.02 1.99 16 50 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 51 H 0.10 2.10 6.93 -2.39 -0.02 2.09 16 Total: -1.00 -70.01 394.32 4.55 -65.47 By element: Atomic # 1 Polarization: 41.35 SS G_CDS: 0.39 Total: 41.74 kcal Atomic # 6 Polarization: -0.68 SS G_CDS: 6.57 Total: 5.90 kcal Atomic # 7 Polarization: -93.39 SS G_CDS: -4.14 Total: -97.53 kcal Atomic # 8 Polarization: -60.34 SS G_CDS: -0.30 Total: -60.64 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -70.01 4.55 -65.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346385624.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.670 kcal (2) G-P(sol) polarization free energy of solvation -70.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds