Wall clock time and date at job start Sat Apr 11 2020 05:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47157 * 2 1 4 4 H 1.09000 * 109.49349 * 304.93059 * 3 2 1 5 5 C 1.53045 * 109.52533 * 184.85227 * 3 2 1 6 6 C 1.53036 * 109.53846 * 178.66480 * 5 3 2 7 7 C 1.53190 * 109.30969 * 61.36707 * 6 5 3 8 8 H 1.08997 * 109.70781 * 65.22403 * 7 6 5 9 9 C 1.53008 * 109.58298 * 185.57519 * 7 6 5 10 10 N 1.46923 * 108.77769 * 305.35875 * 7 6 5 11 11 C 1.34776 * 120.63507 * 233.63097 * 10 7 6 12 12 O 1.21342 * 119.99921 * 7.29274 * 11 10 7 13 13 C 1.49447 * 119.99948 * 187.29555 * 11 10 7 14 14 O 1.21352 * 120.00238 * 6.60152 * 13 11 10 15 15 N 1.34775 * 120.00181 * 186.60611 * 13 11 10 16 16 C 1.47025 * 125.64731 * 359.68649 * 15 13 11 17 17 C 1.54330 * 107.26742 * 178.85382 * 16 15 13 18 18 C 1.55158 * 103.02098 * 338.13903 * 17 16 15 19 19 O 1.42898 * 111.00339 * 277.23476 * 18 17 16 20 20 C 1.50703 * 111.03325 * 153.39393 * 18 17 16 21 21 H 1.07999 * 120.00439 * 6.33327 * 20 18 17 22 22 C 1.37878 * 119.99630 * 186.33034 * 20 18 17 23 23 N 1.31514 * 120.00241 * 0.02562 * 22 20 18 24 24 Si 1.86799 * 119.99817 * 180.02562 * 22 20 18 25 25 H 1.48495 * 109.47454 * 0.02562 * 24 22 20 26 26 H 1.48506 * 109.47013 * 120.00485 * 24 22 20 27 27 H 1.48503 * 109.47427 * 240.00124 * 24 22 20 28 28 C 1.47424 * 125.65484 * 179.97438 * 15 13 11 29 29 C 1.46933 * 118.73471 * 53.61457 * 10 7 6 30 30 H 1.08999 * 109.46732 * 60.00588 * 1 2 3 31 31 H 1.08999 * 109.47044 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46868 * 300.00362 * 1 2 3 33 33 H 1.09006 * 109.47264 * 239.99973 * 2 1 3 34 34 H 1.08995 * 109.46965 * 119.99878 * 2 1 3 35 35 H 1.08993 * 109.45897 * 298.69040 * 5 3 2 36 36 H 1.09002 * 109.45551 * 58.65710 * 5 3 2 37 37 H 1.08998 * 109.50103 * 301.41325 * 6 5 3 38 38 H 1.09005 * 109.49736 * 181.31715 * 6 5 3 39 39 H 1.09002 * 109.46806 * 182.34952 * 9 7 6 40 40 H 1.08999 * 109.46997 * 62.35709 * 9 7 6 41 41 H 1.08993 * 109.47134 * 302.35060 * 9 7 6 42 42 H 1.09009 * 109.88263 * 298.40261 * 16 15 13 43 43 H 1.09004 * 109.87887 * 59.55948 * 16 15 13 44 44 H 1.08997 * 110.84866 * 219.67323 * 17 16 15 45 45 H 1.08999 * 110.66598 * 96.52480 * 17 16 15 46 46 H 0.96703 * 113.99427 * 173.65114 * 19 18 17 47 47 H 0.97000 * 120.00332 * 179.97438 * 23 22 20 48 48 H 1.08996 * 110.36545 * 322.93168 * 28 15 13 49 49 H 1.09006 * 110.36756 * 85.24982 * 28 15 13 50 50 H 1.08996 * 109.58679 * 66.17511 * 29 10 7 51 51 H 1.09002 * 109.58202 * 186.46019 * 29 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6066 1.9815 -0.8424 5 6 3.5656 1.4457 -0.1220 6 6 4.0734 2.8889 -0.1555 7 6 3.6914 3.5908 1.1514 8 1 4.2153 3.1244 1.9858 9 6 4.0725 5.0704 1.0693 10 7 2.2409 3.4660 1.3489 11 6 1.4804 4.5580 1.5624 12 8 1.9668 5.6651 1.4621 13 6 0.0381 4.4053 1.9228 14 8 -0.4195 3.3027 2.1406 15 7 -0.7545 5.4922 2.0058 16 6 -0.3312 6.8811 1.7748 17 6 -1.5766 7.7751 1.9520 18 6 -2.7513 6.7871 1.7254 19 8 -3.0137 6.6145 0.3314 20 6 -3.9897 7.2433 2.4530 21 1 -4.0024 8.2028 2.9485 22 6 -5.1067 6.4356 2.4859 23 7 -5.0912 5.2670 1.8829 24 14 -6.6420 7.0013 3.3871 25 1 -6.4038 8.3432 3.9767 26 1 -7.7773 7.0749 2.4327 27 1 -6.9658 6.0356 4.4678 28 6 -2.1882 5.4860 2.3492 29 6 1.6351 2.1280 1.3087 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.9993 0.9278 0.7334 36 1 3.8574 0.9368 -1.0407 37 1 3.6208 3.4144 -0.9964 38 1 5.1578 2.8906 -0.2660 39 1 3.8382 5.5589 2.0152 40 1 3.5104 5.5462 0.2657 41 1 5.1400 5.1601 0.8687 42 1 0.4344 7.1606 2.4987 43 1 0.0575 6.9864 0.7619 44 1 -1.5924 8.5704 1.2068 45 1 -1.6113 8.1912 2.9588 46 1 -3.6729 5.9343 0.1366 47 1 -5.8769 4.6986 1.9063 48 1 -2.6783 4.6144 1.9156 49 1 -2.3192 5.4968 3.4313 50 1 1.9912 1.5401 2.1546 51 1 0.5497 2.2168 1.3566 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350296515.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:29:16 Heat of formation + Delta-G solvation = -101.345842 kcal Electronic energy + Delta-G solvation = -31854.584983 eV Core-core repulsion = 27754.539517 eV Total energy + Delta-G solvation = -4100.045466 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.95617 -39.08553 -37.77486 -37.32357 -34.82656 -34.27059 -32.75640 -32.26837 -30.74084 -30.24021 -27.92944 -27.21846 -25.88176 -25.12805 -23.86734 -22.88214 -22.07452 -20.66249 -20.26774 -19.68192 -18.70680 -17.23425 -16.83990 -16.36858 -15.90232 -15.82126 -15.24171 -15.00422 -14.77593 -14.47750 -14.34571 -14.11123 -13.95576 -13.69749 -13.27395 -13.10458 -12.90683 -12.74167 -12.70761 -12.46461 -12.20566 -12.19742 -12.00606 -11.64971 -11.50121 -11.33661 -11.23201 -11.14384 -11.06525 -10.86228 -10.78669 -10.70947 -10.57838 -10.55940 -10.47453 -10.22545 -9.89341 -9.36791 -8.75572 -8.63784 -8.49917 -8.38051 -7.90228 -6.31813 -4.41099 1.80542 2.59390 3.17973 3.27198 3.30758 3.57847 3.75766 4.24129 4.46316 4.60969 4.63922 4.75448 4.81669 4.96223 5.02670 5.18215 5.28642 5.33254 5.42692 5.44430 5.47345 5.59307 5.67451 5.75099 5.77867 5.82326 5.82838 5.85105 5.90871 5.98180 6.03166 6.04010 6.08864 6.17619 6.24209 6.30781 6.34382 6.42357 6.50293 6.64663 6.71836 6.81350 6.88666 7.16040 7.27015 7.30658 7.70408 7.84483 7.99175 8.10101 8.45764 8.63505 9.26153 9.34654 10.75408 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.016042 B = 0.003374 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.982447 B = 8295.674097 C = 9560.026643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.112 4.112 3 C -0.104 4.104 4 H 0.073 0.927 5 C -0.116 4.116 6 C -0.130 4.130 7 C 0.140 3.860 8 H 0.072 0.928 9 C -0.139 4.139 10 N -0.583 5.583 11 C 0.511 3.489 12 O -0.513 6.513 13 C 0.506 3.494 14 O -0.530 6.530 15 N -0.571 5.571 16 C 0.111 3.889 17 C -0.122 4.122 18 C 0.248 3.752 19 O -0.581 6.581 20 C -0.536 4.536 21 H 0.068 0.932 22 C 0.071 3.929 23 N -0.893 5.893 24 Si 0.904 3.096 25 H -0.271 1.271 26 H -0.282 1.282 27 H -0.282 1.282 28 C 0.092 3.908 29 C 0.068 3.932 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.042 0.958 42 H 0.067 0.933 43 H 0.068 0.932 44 H 0.076 0.924 45 H 0.078 0.922 46 H 0.381 0.619 47 H 0.270 0.730 48 H 0.091 0.909 49 H 0.067 0.933 50 H 0.062 0.938 51 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.938 -7.491 -2.693 17.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.150 4.150 3 C -0.123 4.123 4 H 0.091 0.909 5 C -0.154 4.154 6 C -0.168 4.168 7 C 0.037 3.963 8 H 0.089 0.911 9 C -0.196 4.196 10 N -0.317 5.317 11 C 0.294 3.706 12 O -0.389 6.389 13 C 0.289 3.711 14 O -0.411 6.411 15 N -0.302 5.302 16 C -0.011 4.011 17 C -0.160 4.160 18 C 0.208 3.792 19 O -0.389 6.389 20 C -0.574 4.574 21 H 0.087 0.913 22 C -0.132 4.132 23 N -0.532 5.532 24 Si 0.731 3.269 25 H -0.196 1.196 26 H -0.207 1.207 27 H -0.208 1.208 28 C -0.029 4.029 29 C -0.053 4.053 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.061 0.939 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.094 0.906 45 H 0.096 0.904 46 H 0.230 0.770 47 H 0.080 0.920 48 H 0.109 0.891 49 H 0.085 0.915 50 H 0.081 0.919 51 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 16.338 -7.174 -2.710 18.048 hybrid contribution -1.124 -0.439 0.539 1.321 sum 15.214 -7.613 -2.171 17.151 Atomic orbital electron populations 1.21851 0.95253 1.01551 1.02951 1.21469 0.96463 0.95288 1.01749 1.21602 0.95389 0.96567 0.98783 0.90878 1.21613 0.95521 0.96279 1.01943 1.22002 1.01003 0.96100 0.97732 1.21387 0.79699 0.97991 0.97210 0.91051 1.22249 0.99108 0.93408 1.04793 1.47971 1.07269 1.07190 1.69281 1.20294 0.87537 0.84558 0.78180 1.90769 1.72892 1.25393 1.49846 1.19784 0.86608 0.84357 0.80311 1.90394 1.75201 1.23871 1.51662 1.48701 1.12140 1.06366 1.62979 1.22152 0.97295 0.80406 1.01260 1.22710 0.93443 0.97926 1.01878 1.19640 0.91309 0.88130 0.80157 1.86135 1.64552 1.62799 1.25451 1.21504 0.97066 1.04527 1.34339 0.91347 1.25080 0.99097 0.94451 0.94578 1.69713 1.30511 1.09896 1.43090 0.86344 0.82241 0.78917 0.79386 1.19555 1.20740 1.20769 1.23488 0.75496 1.03646 1.00252 1.23106 1.04886 0.81023 0.96256 0.92710 0.92938 0.91495 0.92044 0.91986 0.91880 0.91795 0.91354 0.90820 0.90976 0.90732 0.93901 0.91470 0.91390 0.90564 0.90374 0.76967 0.92029 0.89051 0.91450 0.91919 0.83166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 9.67 37.16 0.36 -1.40 16 2 C -0.11 -1.08 5.41 -26.73 -0.14 -1.22 16 3 C -0.10 -1.14 2.34 -90.50 -0.21 -1.35 16 4 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 5 C -0.12 -1.05 5.17 -26.69 -0.14 -1.19 16 6 C -0.13 -1.25 5.37 -26.61 -0.14 -1.40 16 7 C 0.14 1.62 3.49 -67.60 -0.24 1.39 16 8 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 9 C -0.14 -1.69 7.59 37.16 0.28 -1.41 16 10 N -0.58 -8.34 2.97 -165.72 -0.49 -8.83 16 11 C 0.51 8.79 7.61 -11.59 -0.09 8.70 16 12 O -0.51 -9.02 9.58 5.50 0.05 -8.97 16 13 C 0.51 10.01 7.78 -11.59 -0.09 9.92 16 14 O -0.53 -11.00 13.40 5.50 0.07 -10.93 16 15 N -0.57 -11.88 3.33 -171.03 -0.57 -12.45 16 16 C 0.11 2.13 5.49 -3.06 -0.02 2.11 16 17 C -0.12 -2.45 6.13 -24.89 -0.15 -2.61 16 18 C 0.25 5.90 0.87 -89.63 -0.08 5.83 16 19 O -0.58 -14.55 13.16 -35.23 -0.46 -15.02 16 20 C -0.54 -13.67 8.27 -34.44 -0.28 -13.96 16 21 H 0.07 1.72 7.79 -52.49 -0.41 1.31 16 22 C 0.07 1.81 5.29 -17.82 -0.09 1.72 16 23 N -0.89 -23.14 10.69 55.43 0.59 -22.55 16 24 Si 0.90 19.98 29.54 -169.99 -5.02 14.96 16 25 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 27 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 28 C 0.09 2.14 5.38 -2.54 -0.01 2.12 16 29 C 0.07 0.91 4.91 -3.71 -0.02 0.89 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.86 6.70 -51.93 -0.35 0.51 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.07 1.00 6.75 -51.93 -0.35 0.65 16 40 H 0.07 1.05 6.76 -51.93 -0.35 0.70 16 41 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.07 1.19 7.58 -51.92 -0.39 0.80 16 43 H 0.07 1.31 7.72 -51.93 -0.40 0.90 16 44 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 45 H 0.08 1.48 8.03 -51.93 -0.42 1.06 16 46 H 0.38 9.70 7.56 45.56 0.34 10.05 16 47 H 0.27 6.70 8.31 -40.82 -0.34 6.37 16 48 H 0.09 2.34 7.33 -51.93 -0.38 1.96 16 49 H 0.07 1.61 8.03 -51.93 -0.42 1.19 16 50 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 51 H 0.15 2.43 2.94 -55.28 -0.16 2.26 16 LS Contribution 386.10 15.07 5.82 5.82 Total: -1.00 -26.84 386.10 -8.99 -35.83 By element: Atomic # 1 Polarization: 21.90 SS G_CDS: -7.92 Total: 13.98 kcal Atomic # 6 Polarization: 9.21 SS G_CDS: -1.07 Total: 8.15 kcal Atomic # 7 Polarization: -43.36 SS G_CDS: -0.47 Total: -43.83 kcal Atomic # 8 Polarization: -34.57 SS G_CDS: -0.34 Total: -34.91 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -26.84 -8.99 -35.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350296515.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.516 kcal (2) G-P(sol) polarization free energy of solvation -26.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds