Wall clock time and date at job start Sat Apr 11 2020 05:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47051 * 2 1 4 4 N 1.46500 * 109.46918 * 120.00437 * 2 1 3 5 5 C 1.34785 * 119.99578 * 274.99633 * 4 2 1 6 6 O 1.21279 * 120.00059 * 359.97438 * 5 4 2 7 7 C 1.50701 * 119.99547 * 180.02562 * 5 4 2 8 8 C 1.53003 * 109.46491 * 180.02562 * 7 5 4 9 9 C 1.52995 * 109.47185 * 294.99541 * 8 7 5 10 10 C 1.53003 * 109.47185 * 179.97438 * 9 8 7 11 11 C 1.53004 * 109.46919 * 60.00504 * 10 9 8 12 12 C 1.53001 * 109.46949 * 300.00227 * 11 10 9 13 13 C 1.52993 * 109.47401 * 59.99729 * 12 11 10 14 14 C 1.50703 * 109.46841 * 239.99876 * 2 1 3 15 15 O 1.21284 * 120.00272 * 266.57420 * 14 2 1 16 16 N 1.34777 * 119.99938 * 86.58379 * 14 2 1 17 17 C 1.47573 * 134.49324 * 175.06885 * 16 14 2 18 18 C 1.53947 * 86.11828 * 155.35181 * 17 16 14 19 19 O 1.42904 * 113.74016 * 269.15155 * 18 17 16 20 20 C 1.50702 * 113.74249 * 137.95222 * 18 17 16 21 21 H 1.07993 * 120.00043 * 1.92120 * 20 18 17 22 22 C 1.37875 * 119.99657 * 181.92443 * 20 18 17 23 23 N 1.31510 * 120.00338 * 359.97438 * 22 20 18 24 24 Si 1.86801 * 119.99939 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47612 * 179.97438 * 24 22 20 26 26 H 1.48501 * 109.47243 * 300.00388 * 24 22 20 27 27 H 1.48509 * 109.47006 * 60.00062 * 24 22 20 28 28 C 1.47819 * 134.45359 * 354.92301 * 16 14 2 29 29 H 1.09007 * 109.47412 * 184.97105 * 1 2 3 30 30 H 1.09001 * 109.47356 * 304.97091 * 1 2 3 31 31 H 1.08993 * 109.47212 * 64.97485 * 1 2 3 32 32 H 0.97000 * 120.00240 * 95.00176 * 4 2 1 33 33 H 1.08996 * 109.47311 * 300.00041 * 7 5 4 34 34 H 1.08997 * 109.47176 * 60.00384 * 7 5 4 35 35 H 1.09002 * 109.47481 * 55.00379 * 8 7 5 36 36 H 1.08995 * 109.47636 * 300.00065 * 9 8 7 37 37 H 1.09005 * 109.46790 * 60.00699 * 9 8 7 38 38 H 1.08997 * 109.47383 * 300.00361 * 10 9 8 39 39 H 1.08999 * 109.47301 * 180.02562 * 10 9 8 40 40 H 1.09001 * 109.47264 * 179.97438 * 11 10 9 41 41 H 1.08997 * 109.47210 * 59.99751 * 11 10 9 42 42 H 1.09010 * 109.46995 * 299.99712 * 12 11 10 43 43 H 1.09004 * 109.47453 * 180.02562 * 12 11 10 44 44 H 1.08999 * 109.47206 * 180.02562 * 13 12 11 45 45 H 1.08997 * 109.47107 * 60.00263 * 13 12 11 46 46 H 1.08997 * 113.77262 * 41.04510 * 17 16 14 47 47 H 1.09003 * 113.86884 * 269.66495 * 17 16 14 48 48 H 0.96700 * 114.00157 * 178.07246 * 19 18 17 49 49 H 0.96999 * 120.00349 * 179.97438 * 23 22 20 50 50 H 1.08994 * 113.76640 * 90.38766 * 28 16 14 51 51 H 1.08995 * 113.83599 * 318.92008 * 28 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1470 -0.0183 2.3572 6 8 1.8591 1.1586 2.4115 7 6 2.6499 -0.7287 3.5875 8 6 2.7006 0.2543 4.7588 9 6 3.7367 1.3417 4.4675 10 6 3.7870 2.3251 5.6386 11 6 4.1772 1.5779 6.9155 12 6 3.1412 0.4904 7.2068 13 6 3.0908 -0.4929 6.0357 14 6 2.0323 -0.7105 -1.2305 15 8 2.2936 -1.8939 -1.1833 16 7 2.1913 -0.0307 -2.3834 17 6 2.7306 -0.3657 -3.7155 18 6 1.8390 0.7712 -4.2470 19 8 0.5354 0.3418 -4.6450 20 6 2.5124 1.6386 -5.2791 21 1 3.5184 1.4130 -5.6007 22 6 1.8442 2.7201 -5.8126 23 7 0.6191 2.9945 -5.4213 24 14 2.6792 3.7957 -7.0914 25 1 1.7555 4.8832 -7.5031 26 1 3.9128 4.3861 -6.5126 27 1 3.0330 2.9726 -8.2758 28 6 1.8927 1.3492 -2.8212 29 1 -0.3634 -1.0238 0.0891 30 1 -0.3634 0.5890 0.8421 31 1 -0.3633 0.4347 -0.9311 32 1 2.2490 -1.6319 1.1525 33 1 1.9777 -1.5510 3.8325 34 1 3.6492 -1.1205 3.3979 35 1 1.7205 0.7124 4.8916 36 1 4.7168 0.8837 4.3349 37 1 3.4584 1.8744 3.5581 38 1 2.8068 2.7832 5.7708 39 1 4.5247 3.1001 5.4309 40 1 4.2135 2.2785 7.7498 41 1 5.1574 1.1199 6.7833 42 1 2.1609 0.9484 7.3391 43 1 3.4189 -0.0417 8.1167 44 1 2.3525 -1.2674 6.2431 45 1 4.0710 -0.9509 5.9035 46 1 2.4406 -1.3544 -4.0711 47 1 3.7982 -0.1723 -3.8205 48 1 -0.0379 1.0575 -4.9519 49 1 0.1491 3.7557 -5.7964 50 1 2.7135 2.0482 -2.6611 51 1 0.9347 1.7271 -2.4640 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186833285.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:29:42 Heat of formation + Delta-G solvation = -137.061055 kcal Electronic energy + Delta-G solvation = -30023.360038 eV Core-core repulsion = 25921.765844 eV Total energy + Delta-G solvation = -4101.594193 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.67222 -40.88249 -39.45199 -38.81443 -36.04046 -35.84487 -34.15285 -33.74834 -32.13042 -31.54630 -30.18185 -28.07041 -27.36357 -27.05656 -25.00593 -23.47896 -22.68873 -21.71221 -21.28143 -20.58644 -20.03997 -19.34393 -18.46689 -17.87740 -17.30222 -17.05298 -16.66230 -16.32041 -16.19473 -16.08973 -15.87801 -15.22249 -15.02211 -14.94444 -14.84919 -14.60280 -14.36725 -14.31904 -13.83495 -13.61338 -13.45768 -13.38808 -13.28602 -12.98328 -12.93358 -12.86519 -12.77912 -12.70772 -12.45902 -12.26488 -12.21912 -11.95481 -11.82063 -11.39382 -11.31034 -11.27996 -11.02444 -10.89785 -10.65784 -10.60897 -10.30765 -10.21695 -9.63828 -8.26942 -6.43729 1.34171 1.47897 1.49752 1.56603 1.62134 1.69390 2.27691 2.40541 2.95424 3.21517 3.67607 3.72903 3.76147 3.85480 3.95585 3.97953 4.07227 4.14493 4.26844 4.34993 4.40883 4.48191 4.52613 4.58269 4.59174 4.61392 4.64759 4.69732 4.75028 4.77977 4.83784 4.85117 4.89130 4.89339 5.02890 5.07118 5.19965 5.22340 5.26675 5.29549 5.34069 5.36730 5.44842 5.57998 5.64739 5.72145 5.91660 6.47411 6.61654 6.70765 6.94713 7.19810 7.29569 7.43033 8.78776 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.018060 B = 0.002243 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.013272 B =12480.749250 C =13310.556126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.140 3.860 3 H 0.096 0.904 4 N -0.711 5.711 5 C 0.512 3.488 6 O -0.570 6.570 7 C -0.130 4.130 8 C -0.067 4.067 9 C -0.121 4.121 10 C -0.118 4.118 11 C -0.117 4.117 12 C -0.119 4.119 13 C -0.110 4.110 14 C 0.526 3.474 15 O -0.582 6.582 16 N -0.629 5.629 17 C 0.114 3.886 18 C 0.221 3.779 19 O -0.585 6.585 20 C -0.556 4.556 21 H 0.073 0.927 22 C 0.033 3.967 23 N -0.915 5.915 24 Si 0.966 3.034 25 H -0.284 1.284 26 H -0.269 1.269 27 H -0.274 1.274 28 C 0.089 3.911 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.415 0.585 33 H 0.120 0.880 34 H 0.112 0.888 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.051 0.949 38 H 0.050 0.950 39 H 0.057 0.943 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.055 0.945 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.072 0.928 46 H 0.064 0.936 47 H 0.106 0.894 48 H 0.388 0.612 49 H 0.275 0.725 50 H 0.091 0.909 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.471 -4.280 21.512 22.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.031 3.969 3 H 0.114 0.886 4 N -0.366 5.366 5 C 0.301 3.699 6 O -0.449 6.449 7 C -0.169 4.169 8 C -0.086 4.086 9 C -0.158 4.158 10 C -0.156 4.156 11 C -0.155 4.155 12 C -0.157 4.157 13 C -0.147 4.147 14 C 0.315 3.685 15 O -0.464 6.464 16 N -0.362 5.362 17 C -0.008 4.008 18 C 0.180 3.820 19 O -0.396 6.396 20 C -0.594 4.594 21 H 0.091 0.909 22 C -0.168 4.168 23 N -0.555 5.555 24 Si 0.792 3.208 25 H -0.209 1.209 26 H -0.194 1.194 27 H -0.199 1.199 28 C -0.034 4.034 29 H 0.088 0.912 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.252 0.748 33 H 0.138 0.862 34 H 0.130 0.870 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.075 0.925 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.074 0.926 43 H 0.093 0.907 44 H 0.093 0.907 45 H 0.090 0.910 46 H 0.082 0.918 47 H 0.124 0.876 48 H 0.242 0.758 49 H 0.085 0.915 50 H 0.109 0.891 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.456 -4.613 21.889 22.810 hybrid contribution -0.026 0.951 -1.302 1.613 sum 4.430 -3.662 20.587 21.375 Atomic orbital electron populations 1.21962 0.91860 1.03320 1.03252 1.20488 0.96466 0.96956 0.83006 0.88623 1.45915 1.67445 1.14995 1.08203 1.21463 0.76404 0.87106 0.84925 1.90672 1.51238 1.17533 1.85418 1.21829 1.04545 0.99837 0.90694 1.20878 0.99314 0.94854 0.93569 1.21676 0.98614 0.97116 0.98437 1.21495 1.00940 0.97824 0.95309 1.21541 0.99235 0.97866 0.96846 1.21530 0.99130 0.96757 0.98239 1.21577 1.02407 0.97727 0.93023 1.20575 0.77469 0.86687 0.83724 1.90601 1.54677 1.16218 1.84884 1.50189 1.59995 1.15356 1.10650 1.23482 0.99058 0.99647 0.78599 1.20082 0.81915 0.89863 0.90153 1.86046 1.26312 1.40527 1.86744 1.21683 1.01766 1.11503 1.24482 0.90885 1.25731 0.95409 0.97957 0.97676 1.69449 1.12159 1.29886 1.43981 0.85472 0.78410 0.77906 0.79034 1.20921 1.19375 1.19943 1.24233 1.00352 0.82789 0.95980 0.91239 0.90397 0.91722 0.74766 0.86220 0.86978 0.92186 0.92062 0.93036 0.93084 0.92455 0.91683 0.91648 0.92572 0.90715 0.90677 0.90973 0.91771 0.87640 0.75804 0.91477 0.89110 0.91288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.30 9.47 71.98 0.68 -3.61 16 2 C 0.14 4.45 2.76 44.25 0.12 4.58 16 3 H 0.10 3.27 7.44 -2.39 -0.02 3.25 16 4 N -0.71 -18.72 5.06 -446.08 -2.26 -20.98 16 5 C 0.51 12.82 7.51 87.66 0.66 13.48 16 6 O -0.57 -18.33 13.63 -3.03 -0.04 -18.37 16 7 C -0.13 -2.08 5.18 29.85 0.15 -1.93 16 8 C -0.07 -1.15 1.84 -10.79 -0.02 -1.17 16 9 C -0.12 -2.43 4.94 30.59 0.15 -2.28 16 10 C -0.12 -2.12 5.92 30.60 0.18 -1.93 16 11 C -0.12 -1.59 5.92 30.60 0.18 -1.41 16 12 C -0.12 -1.45 5.92 30.59 0.18 -1.27 16 13 C -0.11 -1.32 5.20 30.59 0.16 -1.16 16 14 C 0.53 20.07 7.25 87.66 0.64 20.70 16 15 O -0.58 -24.24 16.76 -3.04 -0.05 -24.29 16 16 N -0.63 -25.51 3.61 -839.65 -3.03 -28.54 16 17 C 0.11 4.79 8.23 86.49 0.71 5.50 16 18 C 0.22 10.30 1.40 -10.88 -0.02 10.28 16 19 O -0.58 -29.55 13.48 -148.98 -2.01 -31.56 16 20 C -0.56 -27.07 8.61 25.60 0.22 -26.85 16 21 H 0.07 3.43 7.81 -2.91 -0.02 3.41 16 22 C 0.03 1.61 5.39 84.65 0.46 2.06 16 23 N -0.91 -45.37 11.20 21.45 0.24 -45.13 16 24 Si 0.97 38.89 29.54 68.60 2.03 40.91 16 25 H -0.28 -11.30 7.11 99.48 0.71 -10.60 16 26 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 27 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 28 C 0.09 3.72 7.91 86.44 0.68 4.40 16 29 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 30 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.06 2.05 8.10 -2.39 -0.02 2.03 16 32 H 0.41 9.90 7.80 -92.71 -0.72 9.18 16 33 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.06 1.26 7.96 -2.39 -0.02 1.24 16 36 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.05 1.38 5.95 -2.38 -0.01 1.36 16 38 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 43 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 46 H 0.06 2.76 8.14 -2.39 -0.02 2.74 16 47 H 0.11 4.00 8.09 -2.39 -0.02 3.98 16 48 H 0.39 19.90 6.60 -74.06 -0.49 19.41 16 49 H 0.28 13.05 8.31 -92.71 -0.77 12.28 16 50 H 0.09 3.65 8.09 -2.39 -0.02 3.63 16 51 H 0.07 2.90 8.10 -2.39 -0.02 2.88 16 Total: -1.00 -59.26 406.30 -0.26 -59.52 By element: Atomic # 1 Polarization: 49.32 SS G_CDS: -0.28 Total: 49.04 kcal Atomic # 6 Polarization: 14.25 SS G_CDS: 5.14 Total: 19.40 kcal Atomic # 7 Polarization: -89.60 SS G_CDS: -5.05 Total: -94.65 kcal Atomic # 8 Polarization: -72.12 SS G_CDS: -2.10 Total: -74.22 kcal Atomic # 14 Polarization: 38.89 SS G_CDS: 2.03 Total: 40.91 kcal Total: -59.26 -0.26 -59.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186833285.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.537 kcal (2) G-P(sol) polarization free energy of solvation -59.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds