Wall clock time and date at job start Sat Apr 11 2020 05:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42896 * 114.00169 * 2 1 4 4 C 1.53007 * 109.47170 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.46975 * 184.99670 * 4 3 2 6 6 C 1.52997 * 109.46806 * 304.99878 * 4 3 2 7 7 O 1.42902 * 109.47310 * 65.00080 * 4 3 2 8 8 C 1.42897 * 113.99974 * 150.00155 * 7 4 3 9 9 C 1.53002 * 109.47101 * 179.97438 * 8 7 4 10 10 H 1.09005 * 109.46520 * 305.00098 * 9 8 7 11 11 O 1.42898 * 109.47030 * 64.99375 * 9 8 7 12 12 C 1.52999 * 109.47003 * 184.99892 * 9 8 7 13 13 N 1.46903 * 109.46862 * 180.15129 * 12 9 8 14 14 C 1.46893 * 110.99929 * 160.30343 * 13 12 9 15 15 C 1.50699 * 109.47410 * 201.99333 * 14 13 12 16 16 H 1.07999 * 119.99866 * 0.02562 * 15 14 13 17 17 C 1.37882 * 120.00261 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99945 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00057 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47089 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.46982 * 119.99809 * 19 17 15 22 22 H 1.48492 * 109.47058 * 239.99923 * 19 17 15 23 23 C 1.46902 * 111.00082 * 284.26046 * 13 12 9 24 24 C 1.50707 * 109.46931 * 169.99982 * 23 13 12 25 25 C 1.38222 * 119.61591 * 94.97802 * 24 23 13 26 26 C 1.38631 * 119.15722 * 179.79300 * 25 24 23 27 27 C 1.38673 * 118.42083 * 0.46929 * 26 25 24 28 28 C 1.38180 * 119.16091 * 359.51085 * 27 26 25 29 29 N 1.31858 * 119.61793 * 275.00001 * 24 23 13 30 30 H 1.09001 * 109.47291 * 60.00345 * 1 2 3 31 31 H 1.09007 * 109.47132 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47404 * 300.00038 * 1 2 3 33 33 H 1.08994 * 109.47364 * 60.00037 * 3 2 1 34 34 H 1.09002 * 109.47013 * 299.99454 * 3 2 1 35 35 H 1.08995 * 109.47220 * 60.00048 * 6 4 3 36 36 H 1.09000 * 109.46899 * 180.02562 * 6 4 3 37 37 H 1.09007 * 109.47158 * 299.99582 * 6 4 3 38 38 H 1.08998 * 109.47283 * 59.99804 * 8 7 4 39 39 H 1.09008 * 109.46774 * 299.99783 * 8 7 4 40 40 H 0.96698 * 113.99567 * 60.00568 * 11 9 8 41 41 H 1.09000 * 109.47178 * 60.15836 * 12 9 8 42 42 H 1.08994 * 109.47242 * 300.14917 * 12 9 8 43 43 H 1.09005 * 109.47456 * 321.99603 * 14 13 12 44 44 H 1.09005 * 109.47254 * 81.99848 * 14 13 12 45 45 H 0.96997 * 120.00430 * 180.02562 * 18 17 15 46 46 H 1.09002 * 109.47211 * 50.00534 * 23 13 12 47 47 H 1.08998 * 109.47003 * 289.99707 * 23 13 12 48 48 H 1.08003 * 120.42173 * 359.97438 * 25 24 23 49 49 H 1.08004 * 120.78621 * 180.23277 * 26 25 24 50 50 H 1.08002 * 120.41352 * 179.78864 * 27 26 25 51 51 H 1.07998 * 119.61215 * 180.25457 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.9786 2.1764 0.0889 6 6 3.9789 0.3193 1.1807 7 8 3.9649 0.5796 -1.2220 8 6 5.2615 0.9978 -1.6533 9 6 5.6162 0.2901 -2.9626 10 1 5.5298 -0.7881 -2.8277 11 8 4.7202 0.7147 -3.9915 12 6 7.0516 0.6411 -3.3593 13 7 7.3910 -0.0355 -4.6183 14 6 8.5370 0.6112 -5.2712 15 6 8.5287 0.2824 -6.7418 16 1 7.7497 -0.3441 -7.1507 17 6 9.5156 0.7813 -7.5654 18 7 10.4644 1.5437 -7.0675 19 14 9.5049 0.3742 -9.3885 20 1 8.3400 -0.4942 -9.6949 21 1 9.4063 1.6297 -10.1754 22 1 10.7595 -0.3359 -9.7445 23 6 7.6496 -1.4643 -4.3951 24 6 7.7510 -2.1699 -5.7229 25 6 8.9922 -2.3701 -6.2970 26 6 9.0748 -3.0240 -7.5166 27 6 7.8997 -3.4453 -8.1204 28 6 6.6948 -3.2101 -7.4861 29 7 6.6545 -2.5887 -6.3237 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.6886 1.8463 0.8899 34 1 1.6887 1.8463 -0.8901 35 1 3.5359 -0.6725 1.0911 36 1 5.0656 0.2336 1.1805 37 1 3.6514 0.7809 2.1123 38 1 5.9978 0.7421 -0.8915 39 1 5.2614 2.0763 -1.8113 40 1 4.7437 1.6656 -4.1657 41 1 7.7353 0.3146 -2.5757 42 1 7.1387 1.7195 -3.4915 43 1 8.4681 1.6911 -5.1400 44 1 9.4624 0.2490 -4.8232 45 1 11.1585 1.8950 -7.6469 46 1 6.8328 -1.8952 -3.8161 47 1 8.5850 -1.5830 -3.8482 48 1 9.8867 -2.0240 -5.8004 49 1 10.0313 -3.1978 -7.9871 50 1 7.9263 -3.9549 -9.0723 51 1 5.7755 -3.5388 -7.9479 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278077847.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:30:06 Heat of formation + Delta-G solvation = -92.674150 kcal Electronic energy + Delta-G solvation = -30251.355466 eV Core-core repulsion = 26151.686034 eV Total energy + Delta-G solvation = -4099.669433 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -39.53400 -39.02500 -37.90735 -36.87836 -35.42128 -32.62768 -32.19019 -31.64830 -31.09693 -29.58947 -27.57502 -27.32873 -26.14561 -25.72852 -23.82711 -22.67439 -21.83008 -21.49169 -21.11470 -19.97706 -17.36462 -16.58136 -16.39829 -16.31455 -16.16862 -15.88331 -15.57335 -15.47421 -15.06592 -14.96790 -14.62814 -14.32285 -14.20321 -13.83610 -13.43664 -13.19856 -12.84278 -12.73829 -12.66038 -12.51824 -12.42520 -12.09099 -12.01212 -11.91706 -11.69137 -11.36389 -11.23900 -11.13244 -10.98621 -10.81236 -10.67529 -10.53064 -10.35097 -9.91515 -9.85119 -9.64026 -9.54698 -9.17274 -8.98167 -8.59381 -8.48865 -7.96994 -7.26695 -6.04666 -3.99022 1.94304 2.15376 3.27785 3.36681 3.44492 3.49841 3.60466 4.38252 4.50966 4.63495 4.77373 4.88659 4.92202 5.02285 5.07965 5.08619 5.16995 5.20918 5.21908 5.31721 5.34289 5.39823 5.46501 5.48891 5.51377 5.52568 5.58127 5.63222 5.73711 5.77107 5.80180 5.95601 5.99043 6.11396 6.14095 6.19363 6.39631 6.47198 6.54695 6.91095 6.94117 6.98446 7.11084 7.21824 7.25622 7.51866 7.83398 8.02743 8.12127 8.22879 8.50018 8.88116 9.06652 9.60788 11.05511 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.015609 B = 0.002652 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.381097 B =10556.445123 C =11346.167749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.377 6.377 3 C 0.065 3.935 4 C 0.086 3.914 5 H 0.070 0.930 6 C -0.171 4.171 7 O -0.359 6.359 8 C 0.028 3.972 9 C 0.120 3.880 10 H 0.101 0.899 11 O -0.532 6.532 12 C 0.029 3.971 13 N -0.515 5.515 14 C 0.190 3.810 15 C -0.484 4.484 16 H 0.068 0.932 17 C 0.058 3.942 18 N -0.899 5.899 19 Si 0.880 3.120 20 H -0.267 1.267 21 H -0.286 1.286 22 H -0.284 1.284 23 C 0.114 3.886 24 C 0.165 3.835 25 C -0.101 4.101 26 C -0.096 4.096 27 C -0.181 4.181 28 C 0.078 3.922 29 N -0.469 5.469 30 H 0.041 0.959 31 H 0.085 0.915 32 H 0.037 0.963 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.074 0.926 36 H 0.055 0.945 37 H 0.060 0.940 38 H 0.053 0.947 39 H 0.050 0.950 40 H 0.365 0.635 41 H 0.033 0.967 42 H 0.074 0.926 43 H 0.028 0.972 44 H -0.006 1.006 45 H 0.259 0.741 46 H 0.074 0.926 47 H 0.036 0.964 48 H 0.126 0.874 49 H 0.120 0.880 50 H 0.119 0.881 51 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.956 -2.285 13.764 17.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.295 6.295 3 C -0.012 4.012 4 C 0.027 3.973 5 H 0.088 0.912 6 C -0.228 4.228 7 O -0.278 6.278 8 C -0.050 4.050 9 C 0.059 3.941 10 H 0.118 0.882 11 O -0.335 6.335 12 C -0.100 4.100 13 N -0.239 5.239 14 C 0.065 3.935 15 C -0.522 4.522 16 H 0.087 0.913 17 C -0.143 4.143 18 N -0.540 5.540 19 Si 0.708 3.292 20 H -0.192 1.192 21 H -0.212 1.212 22 H -0.211 1.211 23 C -0.014 4.014 24 C 0.026 3.974 25 C -0.121 4.121 26 C -0.122 4.122 27 C -0.202 4.202 28 C -0.078 4.078 29 N -0.178 5.178 30 H 0.060 0.940 31 H 0.104 0.896 32 H 0.055 0.945 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.093 0.907 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.211 0.789 41 H 0.051 0.949 42 H 0.093 0.907 43 H 0.046 0.954 44 H 0.012 0.988 45 H 0.069 0.931 46 H 0.092 0.908 47 H 0.054 0.946 48 H 0.144 0.856 49 H 0.138 0.862 50 H 0.137 0.863 51 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -12.149 -2.945 13.671 18.525 hybrid contribution 1.919 0.970 -0.907 2.333 sum -10.231 -1.976 12.764 16.477 Atomic orbital electron populations 1.22735 0.81399 1.02774 0.99676 1.87973 1.19210 1.27057 1.95280 1.22634 0.92579 0.85512 1.00429 1.22139 0.92848 0.96257 0.86016 0.91201 1.22182 1.01394 1.02113 0.97119 1.88128 1.33172 1.67657 1.38807 1.23408 0.85330 0.98463 0.97765 1.21849 0.88664 0.99690 0.83869 0.88159 1.86687 1.62322 1.27952 1.56512 1.22665 0.94986 0.99802 0.92592 1.61909 1.42103 1.00081 1.19809 1.19883 0.85053 0.94183 0.94373 1.21302 1.09423 1.29411 0.92105 0.91347 1.24867 0.95711 0.95423 0.98251 1.69953 1.14206 1.34493 1.35326 0.86670 0.78133 0.78361 0.86024 1.19167 1.21201 1.21070 1.20812 0.99055 0.89586 0.91948 1.20654 0.88129 0.92896 0.95768 1.21710 0.99000 0.95557 0.95861 1.21300 0.98118 0.97489 0.95262 1.21883 0.94184 1.03312 1.00794 1.22403 0.96854 0.96567 0.91977 1.67379 1.31723 1.09089 1.09628 0.94022 0.89648 0.94473 0.92391 0.92516 0.90745 0.92563 0.92137 0.92868 0.93219 0.78924 0.94890 0.90737 0.95439 0.98841 0.93135 0.90774 0.94607 0.85609 0.86225 0.86335 0.84117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.38 -4.47 9.79 -40.07 -0.39 -4.86 16 3 C 0.07 0.64 5.81 37.16 0.22 0.86 16 4 C 0.09 0.90 3.13 -26.73 -0.08 0.81 16 5 H 0.07 0.60 7.79 -51.93 -0.40 0.19 16 6 C -0.17 -1.64 9.33 37.16 0.35 -1.30 16 7 O -0.36 -5.00 9.92 -49.80 -0.49 -5.49 16 8 C 0.03 0.35 5.38 37.16 0.20 0.55 16 9 C 0.12 1.86 3.30 -26.73 -0.09 1.77 16 10 H 0.10 1.70 6.79 -51.93 -0.35 1.35 16 11 O -0.53 -9.42 13.17 -40.09 -0.53 -9.95 16 12 C 0.03 0.48 4.66 -3.82 -0.02 0.46 16 13 N -0.51 -10.76 4.29 -237.51 -1.02 -11.78 16 14 C 0.19 4.66 4.61 -4.98 -0.02 4.64 16 15 C -0.48 -12.98 6.11 -34.44 -0.21 -13.19 16 16 H 0.07 1.94 6.10 -52.49 -0.32 1.62 16 17 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 18 N -0.90 -25.75 13.29 55.43 0.74 -25.02 16 19 Si 0.88 21.70 29.54 -169.99 -5.02 16.67 16 20 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 23 C 0.11 2.24 5.09 -4.97 -0.03 2.21 16 24 C 0.16 3.45 4.11 -82.58 -0.34 3.11 16 25 C -0.10 -2.06 6.96 -39.44 -0.27 -2.33 16 26 C -0.10 -1.81 10.18 -39.28 -0.40 -2.21 16 27 C -0.18 -3.23 10.11 -39.44 -0.40 -3.63 16 28 C 0.08 1.47 11.18 -17.55 -0.20 1.28 16 29 N -0.47 -9.97 10.23 -9.48 -0.10 -10.06 16 30 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.08 0.63 8.14 -51.92 -0.42 0.21 16 32 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.84 7.56 -51.93 -0.39 0.45 16 36 H 0.06 0.52 7.87 -51.93 -0.41 0.11 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.05 0.59 7.87 -51.93 -0.41 0.18 16 39 H 0.05 0.55 8.09 -51.92 -0.42 0.13 16 40 H 0.37 5.30 9.04 45.56 0.41 5.71 16 41 H 0.03 0.50 8.00 -51.93 -0.42 0.09 16 42 H 0.07 1.22 7.57 -51.93 -0.39 0.82 16 43 H 0.03 0.72 7.55 -51.93 -0.39 0.33 16 44 H -0.01 -0.16 7.83 -51.93 -0.41 -0.57 16 45 H 0.26 7.10 8.31 -40.82 -0.34 6.77 16 46 H 0.07 1.36 6.63 -51.93 -0.34 1.02 16 47 H 0.04 0.66 7.84 -51.93 -0.41 0.25 16 48 H 0.13 2.57 8.06 -52.48 -0.42 2.15 16 49 H 0.12 2.01 8.06 -52.48 -0.42 1.58 16 50 H 0.12 1.74 8.06 -52.49 -0.42 1.32 16 51 H 0.14 2.21 8.06 -52.49 -0.42 1.79 16 LS Contribution 413.89 15.07 6.24 6.24 Total: -1.00 -33.41 413.89 -8.87 -42.28 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -8.02 Total: 6.04 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: -0.28 Total: -4.08 kcal Atomic # 7 Polarization: -46.48 SS G_CDS: -0.38 Total: -46.86 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -1.41 Total: -20.30 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -33.41 -8.87 -42.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278077847.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.391 kcal (2) G-P(sol) polarization free energy of solvation -33.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds