Wall clock time and date at job start Sat Apr 11 2020 05:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34228 * 117.00158 * 2 1 4 4 O 1.20834 * 119.99752 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00618 * 179.97438 * 3 2 1 6 6 H 1.08999 * 110.36311 * 57.81393 * 5 3 2 7 7 C 1.54378 * 110.32216 * 295.63825 * 5 3 2 8 8 N 1.48561 * 104.59405 * 217.24904 * 7 5 3 9 9 C 1.46905 * 110.99953 * 159.03815 * 8 7 5 10 10 H 1.08993 * 109.46978 * 304.58091 * 9 8 7 11 11 C 1.52992 * 109.46948 * 184.57855 * 9 8 7 12 12 C 1.50698 * 109.46796 * 64.58117 * 9 8 7 13 13 O 1.21281 * 120.00644 * 14.99614 * 12 9 8 14 14 N 1.34780 * 119.99878 * 194.98994 * 12 9 8 15 15 C 1.46505 * 119.99937 * 3.65549 * 14 12 9 16 16 C 1.46500 * 120.00117 * 183.65094 * 14 12 9 17 17 C 1.50694 * 109.47108 * 90.00433 * 16 14 12 18 18 H 1.08003 * 120.00352 * 359.97438 * 17 16 14 19 19 C 1.37881 * 120.00045 * 180.02562 * 17 16 14 20 20 N 1.31517 * 119.99827 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00282 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47088 * 89.99466 * 21 19 17 23 23 H 1.48496 * 109.47141 * 210.00101 * 21 19 17 24 24 H 1.48503 * 109.46619 * 330.00046 * 21 19 17 25 25 C 1.48555 * 104.22319 * 39.48278 * 8 7 5 26 26 C 1.54260 * 110.32709 * 179.97438 * 5 3 2 27 27 H 1.08997 * 110.32007 * 0.02562 * 26 5 3 28 28 C 1.52994 * 110.32339 * 237.78997 * 26 5 3 29 29 C 1.53005 * 117.49706 * 128.74844 * 28 26 5 30 30 C 1.53005 * 117.49721 * 60.09256 * 28 26 5 31 31 H 1.08999 * 109.46820 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47290 * 300.00102 * 1 2 3 33 33 H 1.09001 * 109.46795 * 60.00236 * 1 2 3 34 34 H 1.09004 * 110.41005 * 336.02492 * 7 5 3 35 35 H 1.08996 * 110.41280 * 98.46626 * 7 5 3 36 36 H 1.09004 * 109.47686 * 308.13730 * 11 9 8 37 37 H 1.09005 * 109.47237 * 68.13654 * 11 9 8 38 38 H 1.09002 * 109.47754 * 188.13862 * 11 9 8 39 39 H 1.08994 * 109.47277 * 84.56416 * 15 14 12 40 40 H 1.08995 * 109.46769 * 204.56693 * 15 14 12 41 41 H 1.08997 * 109.46761 * 324.56495 * 15 14 12 42 42 H 1.08999 * 109.47080 * 210.00658 * 16 14 12 43 43 H 1.09007 * 109.46946 * 329.99910 * 16 14 12 44 44 H 0.96998 * 119.99923 * 180.02562 * 20 19 17 45 45 H 1.09004 * 110.41239 * 201.73947 * 25 8 7 46 46 H 1.08994 * 110.41113 * 79.29475 * 25 8 7 47 47 H 1.09001 * 115.55372 * 274.41576 * 28 26 5 48 48 H 1.09002 * 117.49703 * 359.97438 * 29 28 26 49 49 H 1.08997 * 117.49937 * 145.02435 * 29 28 26 50 50 H 1.09000 * 117.49797 * 214.97542 * 30 28 26 51 51 H 1.08999 * 117.49905 * 359.96603 * 30 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9740 0.7511 -0.8640 7 6 4.1341 0.6778 1.3061 8 7 5.2933 1.5444 1.6410 9 6 5.6362 1.4376 3.0655 10 1 4.7584 1.6684 3.6688 11 6 6.7564 2.4259 3.3958 12 6 6.0985 0.0353 3.3670 13 8 6.3992 -0.7123 2.4606 14 7 6.1778 -0.3881 4.6441 15 6 5.7391 0.4865 5.7344 16 6 6.7027 -1.7230 4.9420 17 6 8.1944 -1.6434 5.1409 18 1 8.7009 -0.6935 5.0537 19 6 8.9128 -2.7834 5.4331 20 7 8.2961 -3.9402 5.5388 21 14 10.7619 -2.6848 5.6790 22 1 11.0579 -2.4302 7.1117 23 1 11.3853 -3.9674 5.2649 24 1 11.3123 -1.5783 4.8556 25 6 4.8323 2.9163 1.3059 26 6 4.0256 2.7476 -0.0002 27 1 3.1626 3.4133 -0.0005 28 6 4.9144 3.0264 -1.2139 29 6 4.5570 4.2289 -2.0899 30 6 4.3055 2.8079 -2.6004 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 3.3873 0.7186 2.0990 35 1 4.4615 -0.3491 1.1436 36 1 7.5801 2.2891 2.6951 37 1 6.3772 3.4448 3.3163 38 1 7.1102 2.2481 4.4114 39 1 4.6624 0.3853 5.8706 40 1 6.2498 0.2038 6.6549 41 1 5.9786 1.5211 5.4890 42 1 6.2349 -2.1031 5.8501 43 1 6.4821 -2.3938 4.1115 44 1 8.8014 -4.7421 5.7448 45 1 5.6854 3.5749 1.1432 46 1 4.1948 3.3074 2.0988 47 1 5.9715 2.7934 -1.0860 48 1 3.6884 4.8210 -1.8017 49 1 5.3789 4.7866 -2.5386 50 1 4.9622 2.4314 -3.3848 51 1 3.2720 2.4649 -2.6479 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353129980.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:30:35 Heat of formation + Delta-G solvation = -78.572415 kcal Electronic energy + Delta-G solvation = -30979.604257 eV Core-core repulsion = 26880.546321 eV Total energy + Delta-G solvation = -4099.057936 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 2.30 seconds Orbital eigenvalues (eV) -41.12153 -39.73049 -38.57325 -36.65640 -36.61443 -34.75459 -33.42517 -32.43445 -29.84804 -29.30207 -27.84167 -27.44585 -25.94107 -24.25783 -23.42340 -22.87461 -22.49089 -21.25475 -20.89761 -19.49223 -18.46970 -17.75521 -16.99607 -16.76669 -16.57138 -16.46771 -15.98688 -15.39153 -15.06610 -14.76483 -14.62302 -14.27773 -14.07931 -13.80456 -13.43462 -13.34165 -13.03863 -12.68533 -12.51999 -12.45354 -12.17045 -12.10654 -12.03605 -11.83833 -11.74013 -11.57409 -11.44534 -11.37828 -11.20769 -11.03690 -11.02953 -10.91406 -10.85448 -10.59698 -10.54913 -10.30601 -10.14128 -10.08973 -9.60447 -8.83839 -8.42415 -8.35982 -7.60515 -6.03023 -4.07776 1.96394 2.46626 3.30867 3.37448 3.40124 3.46064 3.58570 3.69014 4.10404 4.34675 4.38210 4.46358 4.51054 4.72226 4.81571 4.86797 4.90149 4.93933 5.02678 5.10155 5.18924 5.24566 5.27069 5.29318 5.31850 5.39424 5.41966 5.48347 5.53621 5.60638 5.72572 5.78783 5.83945 5.85772 5.89614 5.92452 5.96179 6.04489 6.13634 6.15609 6.23658 6.38088 6.78847 6.85605 7.12780 7.46433 7.51640 7.56945 7.93830 8.24904 8.44185 8.92222 9.14081 9.57471 11.04976 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.014140 B = 0.002925 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.705111 B = 9569.160138 C =10352.244191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.352 6.352 3 C 0.471 3.529 4 O -0.509 6.509 5 C -0.082 4.082 6 H 0.124 0.876 7 C 0.049 3.951 8 N -0.478 5.478 9 C 0.054 3.946 10 H 0.058 0.942 11 C -0.142 4.142 12 C 0.511 3.489 13 O -0.521 6.521 14 N -0.604 5.604 15 C 0.078 3.922 16 C 0.247 3.753 17 C -0.526 4.526 18 H 0.057 0.943 19 C 0.061 3.939 20 N -0.895 5.895 21 Si 0.898 3.102 22 H -0.281 1.281 23 H -0.285 1.285 24 H -0.274 1.274 25 C 0.038 3.962 26 C -0.054 4.054 27 H 0.101 0.899 28 C -0.137 4.137 29 C -0.178 4.178 30 C -0.182 4.182 31 H 0.102 0.898 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.042 0.958 35 H 0.110 0.890 36 H 0.073 0.927 37 H 0.060 0.940 38 H 0.072 0.928 39 H 0.041 0.959 40 H 0.076 0.924 41 H 0.059 0.941 42 H 0.031 0.969 43 H 0.044 0.956 44 H 0.263 0.737 45 H 0.092 0.908 46 H 0.046 0.954 47 H 0.116 0.884 48 H 0.093 0.907 49 H 0.093 0.907 50 H 0.095 0.905 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.420 15.263 -10.111 22.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.268 6.268 3 C 0.314 3.686 4 O -0.397 6.397 5 C -0.102 4.102 6 H 0.141 0.859 7 C -0.079 4.079 8 N -0.203 5.203 9 C -0.058 4.058 10 H 0.075 0.925 11 C -0.199 4.199 12 C 0.296 3.704 13 O -0.397 6.397 14 N -0.337 5.337 15 C -0.066 4.066 16 C 0.127 3.873 17 C -0.564 4.564 18 H 0.075 0.925 19 C -0.141 4.141 20 N -0.534 5.534 21 Si 0.725 3.275 22 H -0.207 1.207 23 H -0.211 1.211 24 H -0.198 1.198 25 C -0.090 4.090 26 C -0.073 4.073 27 H 0.119 0.881 28 C -0.155 4.155 29 C -0.215 4.215 30 C -0.219 4.219 31 H 0.121 0.879 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.060 0.940 35 H 0.128 0.872 36 H 0.092 0.908 37 H 0.079 0.921 38 H 0.091 0.909 39 H 0.059 0.941 40 H 0.095 0.905 41 H 0.078 0.922 42 H 0.049 0.951 43 H 0.062 0.938 44 H 0.073 0.927 45 H 0.110 0.890 46 H 0.064 0.936 47 H 0.134 0.866 48 H 0.111 0.889 49 H 0.112 0.888 50 H 0.114 0.886 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -12.967 14.770 -10.822 22.437 hybrid contribution 0.024 0.219 0.812 0.841 sum -12.943 14.988 -10.010 22.190 Atomic orbital electron populations 1.23291 0.76368 1.03883 1.02397 1.86570 1.23379 1.33160 1.83710 1.23711 0.92037 0.81302 0.71574 1.90624 1.67020 1.36337 1.45754 1.21914 0.86433 0.99267 1.02597 0.85859 1.23070 0.91381 1.00164 0.93253 1.65306 1.33417 1.04278 1.17269 1.21858 0.98973 0.95844 0.89115 0.92466 1.21817 0.98118 0.97035 1.02948 1.19994 0.79279 0.87908 0.83268 1.90659 1.48499 1.55895 1.44602 1.48135 1.62336 1.18590 1.04623 1.21758 0.98500 0.94224 0.92166 1.19279 0.93638 0.77298 0.97044 1.21439 0.92578 0.94346 1.48078 0.92455 1.24939 0.98718 0.95156 0.95307 1.69934 1.35997 0.98739 1.48730 0.86502 0.85183 0.77590 0.78188 1.20701 1.21097 1.19847 1.23242 0.98555 0.91862 0.95294 1.21590 0.97960 0.93793 0.93941 0.88143 1.22308 1.00253 1.02739 0.90160 1.23031 1.03278 0.91032 1.04138 1.22941 1.01816 0.99780 0.97387 0.87918 0.91919 0.91951 0.93952 0.87162 0.90771 0.92141 0.90898 0.94078 0.90545 0.92244 0.95135 0.93774 0.92739 0.88997 0.93578 0.86607 0.88891 0.88817 0.88649 0.89276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 101.05 1.07 1.36 16 2 O -0.35 -4.17 10.56 -39.25 -0.41 -4.58 16 3 C 0.47 5.85 7.12 36.00 0.26 6.11 16 4 O -0.51 -7.04 15.00 -18.76 -0.28 -7.33 16 5 C -0.08 -0.98 3.00 -90.39 -0.27 -1.25 16 6 H 0.12 1.41 7.38 -51.93 -0.38 1.03 16 7 C 0.05 0.70 5.25 -2.18 -0.01 0.69 16 8 N -0.48 -6.89 4.87 -223.38 -1.09 -7.98 16 9 C 0.05 0.83 1.42 -68.87 -0.10 0.73 16 10 H 0.06 0.78 7.26 -51.93 -0.38 0.40 16 11 C -0.14 -1.88 8.45 37.15 0.31 -1.57 16 12 C 0.51 10.52 6.44 -10.98 -0.07 10.45 16 13 O -0.52 -12.93 14.75 5.56 0.08 -12.84 16 14 N -0.60 -12.71 2.86 -182.96 -0.52 -13.23 16 15 C 0.08 1.22 9.76 59.85 0.58 1.81 16 16 C 0.25 6.43 5.16 -5.20 -0.03 6.41 16 17 C -0.53 -14.84 9.39 -34.44 -0.32 -15.16 16 18 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 19 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 20 N -0.89 -26.60 13.29 55.43 0.74 -25.86 16 21 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 24 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 25 C 0.04 0.43 4.91 -2.15 -0.01 0.42 16 26 C -0.05 -0.58 2.84 -89.21 -0.25 -0.84 16 27 H 0.10 1.15 6.26 -51.93 -0.33 0.82 16 28 C -0.14 -1.34 4.91 -90.62 -0.45 -1.78 16 29 C -0.18 -1.52 10.19 -26.69 -0.27 -1.79 16 30 C -0.18 -1.65 9.64 -26.69 -0.26 -1.91 16 31 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 33 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 34 H 0.04 0.60 7.62 -51.93 -0.40 0.20 16 35 H 0.11 1.84 7.07 -51.93 -0.37 1.48 16 36 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.06 0.62 7.38 -51.93 -0.38 0.24 16 38 H 0.07 0.98 6.10 -51.93 -0.32 0.66 16 39 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.08 1.23 8.03 -51.93 -0.42 0.81 16 41 H 0.06 0.78 4.81 -51.93 -0.25 0.53 16 42 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 43 H 0.04 1.30 7.37 -51.93 -0.38 0.92 16 44 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 45 H 0.09 0.95 7.57 -51.93 -0.39 0.55 16 46 H 0.05 0.49 7.97 -51.93 -0.41 0.08 16 47 H 0.12 1.22 8.10 -51.93 -0.42 0.80 16 48 H 0.09 0.79 8.07 -51.93 -0.42 0.37 16 49 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 50 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 51 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 406.99 15.07 6.13 6.13 Total: -1.00 -33.88 406.99 -8.88 -42.76 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -8.59 Total: 0.82 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: 0.08 Total: 5.30 kcal Atomic # 7 Polarization: -46.19 SS G_CDS: -0.87 Total: -47.07 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: -0.61 Total: -24.75 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.88 -8.88 -42.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353129980.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.813 kcal (2) G-P(sol) polarization free energy of solvation -33.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.30 seconds