Wall clock time and date at job start Sat Apr 11 2020 05:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34228 * 117.00158 * 2 1 4 4 O 1.20834 * 119.99752 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00618 * 179.97438 * 3 2 1 6 6 H 1.08999 * 110.36311 * 57.81393 * 5 3 2 7 7 C 1.54378 * 110.32216 * 295.63825 * 5 3 2 8 8 N 1.48561 * 104.59405 * 217.24904 * 7 5 3 9 9 C 1.46905 * 110.99953 * 159.03815 * 8 7 5 10 10 H 1.08993 * 109.46978 * 304.58091 * 9 8 7 11 11 C 1.52992 * 109.46948 * 184.57855 * 9 8 7 12 12 C 1.50698 * 109.46796 * 64.58117 * 9 8 7 13 13 O 1.21281 * 120.00644 * 14.99614 * 12 9 8 14 14 N 1.34780 * 119.99878 * 194.98994 * 12 9 8 15 15 C 1.46505 * 119.99937 * 3.65549 * 14 12 9 16 16 C 1.46500 * 120.00117 * 183.65094 * 14 12 9 17 17 C 1.50694 * 109.47108 * 90.00433 * 16 14 12 18 18 H 1.08003 * 120.00352 * 359.97438 * 17 16 14 19 19 C 1.37881 * 120.00045 * 180.02562 * 17 16 14 20 20 N 1.31517 * 119.99827 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00282 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47088 * 89.99466 * 21 19 17 23 23 H 1.48496 * 109.47141 * 210.00101 * 21 19 17 24 24 H 1.48503 * 109.46619 * 330.00046 * 21 19 17 25 25 C 1.48555 * 104.22319 * 39.48278 * 8 7 5 26 26 C 1.54260 * 110.32709 * 179.97438 * 5 3 2 27 27 H 1.08997 * 110.32007 * 0.02562 * 26 5 3 28 28 C 1.52994 * 110.32339 * 237.78997 * 26 5 3 29 29 C 1.53005 * 117.49706 * 128.74844 * 28 26 5 30 30 C 1.53005 * 117.49721 * 60.09256 * 28 26 5 31 31 H 1.08999 * 109.46820 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47290 * 300.00102 * 1 2 3 33 33 H 1.09001 * 109.46795 * 60.00236 * 1 2 3 34 34 H 1.09004 * 110.41005 * 336.02492 * 7 5 3 35 35 H 1.08996 * 110.41280 * 98.46626 * 7 5 3 36 36 H 1.09004 * 109.47686 * 308.13730 * 11 9 8 37 37 H 1.09005 * 109.47237 * 68.13654 * 11 9 8 38 38 H 1.09002 * 109.47754 * 188.13862 * 11 9 8 39 39 H 1.08994 * 109.47277 * 84.56416 * 15 14 12 40 40 H 1.08995 * 109.46769 * 204.56693 * 15 14 12 41 41 H 1.08997 * 109.46761 * 324.56495 * 15 14 12 42 42 H 1.08999 * 109.47080 * 210.00658 * 16 14 12 43 43 H 1.09007 * 109.46946 * 329.99910 * 16 14 12 44 44 H 0.96998 * 119.99923 * 180.02562 * 20 19 17 45 45 H 1.09004 * 110.41239 * 201.73947 * 25 8 7 46 46 H 1.08994 * 110.41113 * 79.29475 * 25 8 7 47 47 H 1.09001 * 115.55372 * 274.41576 * 28 26 5 48 48 H 1.09002 * 117.49703 * 359.97438 * 29 28 26 49 49 H 1.08997 * 117.49937 * 145.02435 * 29 28 26 50 50 H 1.09000 * 117.49797 * 214.97542 * 30 28 26 51 51 H 1.08999 * 117.49905 * 359.96603 * 30 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9740 0.7511 -0.8640 7 6 4.1341 0.6778 1.3061 8 7 5.2933 1.5444 1.6410 9 6 5.6362 1.4376 3.0655 10 1 4.7584 1.6684 3.6688 11 6 6.7564 2.4259 3.3958 12 6 6.0985 0.0353 3.3670 13 8 6.3992 -0.7123 2.4606 14 7 6.1778 -0.3881 4.6441 15 6 5.7391 0.4865 5.7344 16 6 6.7027 -1.7230 4.9420 17 6 8.1944 -1.6434 5.1409 18 1 8.7009 -0.6935 5.0537 19 6 8.9128 -2.7834 5.4331 20 7 8.2961 -3.9402 5.5388 21 14 10.7619 -2.6848 5.6790 22 1 11.0579 -2.4302 7.1117 23 1 11.3853 -3.9674 5.2649 24 1 11.3123 -1.5783 4.8556 25 6 4.8323 2.9163 1.3059 26 6 4.0256 2.7476 -0.0002 27 1 3.1626 3.4133 -0.0005 28 6 4.9144 3.0264 -1.2139 29 6 4.5570 4.2289 -2.0899 30 6 4.3055 2.8079 -2.6004 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 3.3873 0.7186 2.0990 35 1 4.4615 -0.3491 1.1436 36 1 7.5801 2.2891 2.6951 37 1 6.3772 3.4448 3.3163 38 1 7.1102 2.2481 4.4114 39 1 4.6624 0.3853 5.8706 40 1 6.2498 0.2038 6.6549 41 1 5.9786 1.5211 5.4890 42 1 6.2349 -2.1031 5.8501 43 1 6.4821 -2.3938 4.1115 44 1 8.8014 -4.7421 5.7448 45 1 5.6854 3.5749 1.1432 46 1 4.1948 3.3074 2.0988 47 1 5.9715 2.7934 -1.0860 48 1 3.6884 4.8210 -1.8017 49 1 5.3789 4.7866 -2.5386 50 1 4.9622 2.4314 -3.3848 51 1 3.2720 2.4649 -2.6479 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353129980.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:30:33 Heat of formation + Delta-G solvation = -100.271443 kcal Electronic energy + Delta-G solvation = -30980.545197 eV Core-core repulsion = 26880.546321 eV Total energy + Delta-G solvation = -4099.998876 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -42.10952 -41.03218 -39.74379 -37.67792 -37.51417 -36.51253 -34.93349 -34.15851 -30.93362 -30.34128 -29.53962 -28.34883 -27.43258 -25.80672 -24.41856 -24.29362 -23.27246 -22.37387 -21.89473 -20.39417 -19.95418 -18.74267 -18.65056 -18.10651 -17.96519 -17.59846 -17.11678 -16.79416 -16.24413 -16.16836 -15.96752 -15.51728 -15.30715 -14.90735 -14.52288 -14.37351 -14.27007 -14.09608 -13.90351 -13.52778 -13.39938 -13.36027 -13.25201 -13.05439 -13.03356 -12.83336 -12.65595 -12.57194 -12.43835 -12.38740 -12.29950 -12.19342 -12.13155 -11.88190 -11.81061 -11.68584 -11.59164 -11.05762 -10.86131 -10.62712 -10.41947 -9.50782 -9.36002 -8.20762 -6.35662 0.97988 1.37582 1.40865 1.51117 1.60678 1.85731 2.24725 2.42420 2.83850 2.94819 3.08704 3.35919 3.47782 3.64259 3.72146 3.83767 3.98852 4.06651 4.07276 4.13683 4.22812 4.27360 4.29564 4.31439 4.38845 4.51422 4.54373 4.58744 4.65300 4.66522 4.73235 4.81264 4.82264 4.86620 4.93026 4.96099 5.00669 5.03097 5.10700 5.24656 5.24983 5.29528 5.30914 5.42846 5.57685 5.72621 5.81370 5.92403 6.07970 6.57307 6.72477 6.81912 7.30546 7.53435 8.86229 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.014140 B = 0.002925 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.705111 B = 9569.160138 C =10352.244191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.366 6.366 3 C 0.475 3.525 4 O -0.523 6.523 5 C -0.077 4.077 6 H 0.123 0.877 7 C 0.053 3.947 8 N -0.496 5.496 9 C 0.067 3.933 10 H 0.083 0.917 11 C -0.137 4.137 12 C 0.501 3.499 13 O -0.576 6.576 14 N -0.612 5.612 15 C 0.072 3.928 16 C 0.262 3.738 17 C -0.540 4.540 18 H 0.055 0.945 19 C 0.007 3.993 20 N -0.930 5.930 21 Si 0.968 3.032 22 H -0.263 1.263 23 H -0.282 1.282 24 H -0.272 1.272 25 C 0.042 3.958 26 C -0.045 4.045 27 H 0.100 0.900 28 C -0.145 4.145 29 C -0.164 4.164 30 C -0.186 4.186 31 H 0.127 0.873 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.042 0.958 35 H 0.074 0.926 36 H 0.055 0.945 37 H 0.100 0.900 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.093 0.907 42 H 0.021 0.979 43 H -0.003 1.003 44 H 0.267 0.733 45 H 0.107 0.893 46 H 0.061 0.939 47 H 0.109 0.891 48 H 0.096 0.904 49 H 0.106 0.894 50 H 0.101 0.899 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.426 18.131 -9.863 24.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.282 6.282 3 C 0.318 3.682 4 O -0.412 6.412 5 C -0.097 4.097 6 H 0.141 0.859 7 C -0.075 4.075 8 N -0.221 5.221 9 C -0.045 4.045 10 H 0.101 0.899 11 C -0.194 4.194 12 C 0.288 3.712 13 O -0.455 6.455 14 N -0.344 5.344 15 C -0.070 4.070 16 C 0.140 3.860 17 C -0.579 4.579 18 H 0.073 0.927 19 C -0.192 4.192 20 N -0.569 5.569 21 Si 0.792 3.208 22 H -0.188 1.188 23 H -0.208 1.208 24 H -0.196 1.196 25 C -0.085 4.085 26 C -0.064 4.064 27 H 0.118 0.882 28 C -0.163 4.163 29 C -0.201 4.201 30 C -0.223 4.223 31 H 0.145 0.855 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.061 0.939 35 H 0.093 0.907 36 H 0.074 0.926 37 H 0.119 0.881 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.112 0.888 42 H 0.039 0.961 43 H 0.015 0.985 44 H 0.075 0.925 45 H 0.125 0.875 46 H 0.079 0.921 47 H 0.127 0.873 48 H 0.115 0.885 49 H 0.125 0.875 50 H 0.120 0.880 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -13.002 17.678 -10.548 24.348 hybrid contribution -0.070 -0.733 0.706 1.020 sum -13.072 16.945 -9.842 23.556 Atomic orbital electron populations 1.23585 0.74520 1.05704 1.02811 1.86560 1.25320 1.32936 1.83394 1.23691 0.92062 0.81267 0.71151 1.90609 1.67332 1.36715 1.46566 1.21862 0.86334 1.00158 1.01300 0.85904 1.22874 0.91402 0.98710 0.94500 1.65246 1.33925 1.06162 1.16792 1.21785 1.00460 0.92073 0.90224 0.89928 1.21832 0.96827 0.98462 1.02284 1.21056 0.78065 0.89800 0.82242 1.90627 1.50814 1.57898 1.46130 1.48149 1.62158 1.17519 1.06555 1.22047 0.99894 0.94848 0.90182 1.18725 0.93174 0.79613 0.94478 1.21708 0.93671 0.94414 1.48115 0.92683 1.25874 1.03835 0.94703 0.94815 1.70059 1.37999 0.99486 1.49395 0.85408 0.78912 0.77529 0.78926 1.18799 1.20782 1.19629 1.23334 0.99398 0.90045 0.95727 1.21526 0.97945 0.92567 0.94368 0.88171 1.22225 0.99632 1.04330 0.90159 1.23089 1.03643 0.90576 1.02753 1.22972 1.01569 1.00617 0.97107 0.85524 0.91794 0.91243 0.93940 0.90725 0.92569 0.88104 0.90909 0.91557 0.91120 0.88841 0.96102 0.98524 0.92457 0.87475 0.92107 0.87336 0.88529 0.87525 0.88035 0.89842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.56 113.37 1.20 1.62 16 2 O -0.37 -8.60 10.56 -51.40 -0.54 -9.14 16 3 C 0.47 11.57 7.12 71.24 0.51 12.08 16 4 O -0.52 -13.89 15.00 21.94 0.33 -13.56 16 5 C -0.08 -1.82 3.00 -10.65 -0.03 -1.85 16 6 H 0.12 2.88 7.38 -2.39 -0.02 2.86 16 7 C 0.05 1.55 5.25 86.45 0.45 2.00 16 8 N -0.50 -13.87 4.87 -860.64 -4.19 -18.07 16 9 C 0.07 1.92 1.42 44.17 0.06 1.99 16 10 H 0.08 1.99 7.26 -2.39 -0.02 1.97 16 11 C -0.14 -3.25 8.45 71.98 0.61 -2.64 16 12 C 0.50 21.01 6.44 87.66 0.56 21.58 16 13 O -0.58 -30.12 14.75 -3.03 -0.04 -30.17 16 14 N -0.61 -26.12 2.86 -851.14 -2.43 -28.55 16 15 C 0.07 2.16 9.76 127.77 1.25 3.41 16 16 C 0.26 14.28 5.16 85.63 0.44 14.72 16 17 C -0.54 -31.27 9.39 25.60 0.24 -31.03 16 18 H 0.05 3.13 7.81 -2.91 -0.02 3.11 16 19 C 0.01 0.38 5.46 84.66 0.46 0.84 16 20 N -0.93 -56.70 13.29 21.45 0.28 -56.41 16 21 Si 0.97 45.05 29.54 68.60 2.03 47.08 16 22 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 23 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 24 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 25 C 0.04 0.83 4.91 86.47 0.42 1.26 16 26 C -0.05 -0.91 2.84 -9.88 -0.03 -0.94 16 27 H 0.10 2.08 6.26 -2.39 -0.01 2.06 16 28 C -0.15 -2.64 4.91 -10.79 -0.05 -2.69 16 29 C -0.16 -2.43 10.19 30.62 0.31 -2.11 16 30 C -0.19 -3.13 9.64 30.62 0.30 -2.83 16 31 H 0.13 1.36 8.14 -2.39 -0.02 1.35 16 32 H 0.06 1.01 8.13 -2.39 -0.02 0.99 16 33 H 0.07 1.01 8.13 -2.39 -0.02 0.99 16 34 H 0.04 1.19 7.62 -2.39 -0.02 1.18 16 35 H 0.07 2.69 7.07 -2.39 -0.02 2.67 16 36 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 37 H 0.10 1.61 7.38 -2.38 -0.02 1.59 16 38 H 0.07 1.74 6.10 -2.39 -0.01 1.72 16 39 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.07 2.20 8.03 -2.39 -0.02 2.18 16 41 H 0.09 2.15 4.81 -2.39 -0.01 2.14 16 42 H 0.02 1.16 8.07 -2.39 -0.02 1.14 16 43 H 0.00 -0.21 7.37 -2.38 -0.02 -0.23 16 44 H 0.27 15.24 8.31 -92.71 -0.77 14.46 16 45 H 0.11 1.84 7.57 -2.39 -0.02 1.82 16 46 H 0.06 1.06 7.97 -2.39 -0.02 1.05 16 47 H 0.11 2.16 8.10 -2.39 -0.02 2.14 16 48 H 0.10 1.39 8.07 -2.39 -0.02 1.37 16 49 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 50 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 51 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -77.09 406.99 3.04 -74.05 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: 0.91 Total: 19.37 kcal Atomic # 6 Polarization: 8.70 SS G_CDS: 6.70 Total: 15.40 kcal Atomic # 7 Polarization: -96.69 SS G_CDS: -6.34 Total: -103.03 kcal Atomic # 8 Polarization: -52.61 SS G_CDS: -0.26 Total: -52.87 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -77.09 3.04 -74.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353129980.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.222 kcal (2) G-P(sol) polarization free energy of solvation -77.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds