Wall clock time and date at job start Sat Apr 11 2020 05:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09003 * 109.46651 * 2 1 4 4 C 1.50700 * 109.46738 * 119.99894 * 2 1 3 5 5 H 1.07993 * 120.00036 * 32.90767 * 4 2 1 6 6 C 1.37879 * 119.99404 * 212.90132 * 4 2 1 7 7 N 1.31512 * 120.00133 * 352.78709 * 6 4 2 8 8 Si 1.86802 * 119.99680 * 172.79041 * 6 4 2 9 9 H 1.48497 * 109.46993 * 359.97438 * 8 6 4 10 10 H 1.48492 * 109.47110 * 119.99932 * 8 6 4 11 11 H 1.48502 * 109.46757 * 239.99859 * 8 6 4 12 12 N 1.46495 * 109.46879 * 240.00364 * 2 1 3 13 13 C 1.34771 * 120.00695 * 85.00089 * 12 2 1 14 14 O 1.21282 * 119.99891 * 4.85948 * 13 12 2 15 15 C 1.50699 * 120.00176 * 184.86395 * 13 12 2 16 16 C 1.52993 * 110.43647 * 63.05916 * 15 13 12 17 17 C 1.50701 * 109.47636 * 59.76608 * 16 15 13 18 18 O 1.21282 * 119.99324 * 3.34417 * 17 16 15 19 19 N 1.34776 * 120.00440 * 183.33756 * 17 16 15 20 20 C 1.47151 * 120.98121 * 359.72739 * 19 17 16 21 21 C 1.53710 * 108.16556 * 129.42841 * 20 19 17 22 22 O 1.42959 * 109.14759 * 52.53241 * 21 20 19 23 23 C 1.42961 * 114.16861 * 297.29480 * 22 21 20 24 24 C 1.47147 * 120.98280 * 179.97438 * 19 17 16 25 25 C 1.54886 * 110.48597 * 300.51110 * 15 13 12 26 26 C 1.55233 * 102.59112 * 279.18921 * 25 15 13 27 27 C 1.54266 * 104.23228 * 322.08673 * 26 25 15 28 28 C 1.53869 * 106.60046 * 23.60634 * 27 26 25 29 29 H 1.08999 * 109.46906 * 295.02314 * 1 2 3 30 30 H 1.09000 * 109.47032 * 55.02142 * 1 2 3 31 31 H 1.08999 * 109.47337 * 175.02286 * 1 2 3 32 32 H 0.96996 * 120.00364 * 4.49538 * 7 6 4 33 33 H 0.97008 * 119.99542 * 264.99803 * 12 2 1 34 34 H 1.08999 * 109.47237 * 179.77172 * 16 15 13 35 35 H 1.08998 * 109.47029 * 299.76655 * 16 15 13 36 36 H 1.09002 * 109.67773 * 249.20855 * 20 19 17 37 37 H 1.09003 * 109.67977 * 9.75191 * 20 19 17 38 38 H 1.09003 * 109.65440 * 292.57131 * 21 20 19 39 39 H 1.08997 * 109.48280 * 172.39608 * 21 20 19 40 40 H 1.09006 * 109.50757 * 302.64956 * 23 22 21 41 41 H 1.09001 * 109.55116 * 182.52847 * 23 22 21 42 42 H 1.09001 * 109.68206 * 350.24208 * 24 19 17 43 43 H 1.08996 * 109.67926 * 110.75548 * 24 19 17 44 44 H 1.09002 * 110.75489 * 37.58539 * 25 15 13 45 45 H 1.08998 * 110.75677 * 160.94861 * 25 15 13 46 46 H 1.08998 * 110.46977 * 203.39295 * 26 25 15 47 47 H 1.08998 * 110.46859 * 80.77592 * 26 25 15 48 48 H 1.09000 * 110.02820 * 264.32503 * 27 26 25 49 49 H 1.08996 * 110.03101 * 142.89828 * 27 26 25 50 50 H 1.09003 * 110.03713 * 240.71800 * 28 27 26 51 51 H 1.09004 * 110.03249 * 119.28493 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 1.4720 -1.5358 1.6440 6 6 3.2073 -0.3065 1.8282 7 7 3.9620 0.6011 1.2484 8 14 3.7273 -1.0487 3.4617 9 1 2.7122 -2.0395 3.9008 10 1 5.0412 -1.7223 3.3035 11 1 3.8417 0.0264 4.4798 12 7 2.0183 -0.6905 -1.1962 13 6 2.1471 -0.0183 -2.3571 14 8 1.9435 1.1769 -2.3916 15 6 2.5439 -0.7515 -3.6125 16 6 1.4799 -1.7853 -3.9862 17 6 0.1623 -1.0903 -4.2145 18 8 0.0956 0.1189 -4.1501 19 7 -0.9417 -1.8125 -4.4904 20 6 -0.8841 -3.2801 -4.5798 21 6 -1.9992 -3.8584 -3.6939 22 8 -3.2431 -3.2496 -4.0487 23 6 -3.2871 -1.8375 -3.8297 24 6 -2.2392 -1.1562 -4.7165 25 6 3.9221 -1.4340 -3.4289 26 6 4.9137 -0.2640 -3.6690 27 6 4.2687 0.5522 -4.8080 28 6 2.7619 0.2423 -4.7722 29 1 -0.3633 0.4347 0.9312 30 1 -0.3633 0.5891 -0.8420 31 1 -0.3634 -1.0238 -0.0892 32 1 3.6611 1.0338 0.4341 33 1 2.2490 -1.6318 -1.1526 34 1 1.7803 -2.3029 -4.8973 35 1 1.3743 -2.5072 -3.1764 36 1 -1.0343 -3.5911 -5.6137 37 1 0.0858 -3.6316 -4.2275 38 1 -1.7789 -3.6528 -2.6463 39 1 -2.0640 -4.9355 -3.8477 40 1 -3.0716 -1.6246 -2.7826 41 1 -4.2782 -1.4601 -4.0814 42 1 -2.1672 -0.1006 -4.4547 43 1 -2.5235 -1.2561 -5.7639 44 1 4.0255 -1.8303 -2.4188 45 1 4.0655 -2.2204 -4.1700 46 1 5.8868 -0.6463 -3.9773 47 1 5.0095 0.3450 -2.7701 48 1 4.6891 0.2510 -5.7675 49 1 4.4349 1.6170 -4.6448 50 1 2.4510 -0.2093 -5.7143 51 1 2.1968 1.1567 -4.5915 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356421221.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:30:43 Heat of formation + Delta-G solvation = -155.970305 kcal Electronic energy + Delta-G solvation = -32405.980736 eV Core-core repulsion = 28303.566576 eV Total energy + Delta-G solvation = -4102.414160 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.96139 -40.75006 -39.21297 -38.16890 -36.66346 -35.80140 -34.21098 -33.22266 -32.21975 -31.11347 -29.49150 -29.09702 -27.00482 -26.78348 -24.99363 -24.21841 -23.11489 -22.35650 -21.39667 -20.51094 -20.01488 -18.97595 -18.32565 -17.87146 -17.33340 -16.89095 -16.72316 -16.59914 -16.39890 -16.03949 -15.89392 -15.68769 -15.53090 -15.42779 -15.02750 -14.70497 -14.54279 -14.23820 -14.11601 -13.70837 -13.52226 -13.18887 -13.11106 -13.02485 -12.85033 -12.63751 -12.44174 -12.36262 -12.17071 -12.13450 -12.00924 -11.94413 -11.86762 -11.77896 -11.76043 -11.38231 -11.25684 -10.82487 -10.77786 -10.69401 -10.33093 -9.60794 -9.57639 -8.71153 -6.50319 1.54850 1.60281 1.62487 1.79832 1.82547 2.04006 2.52594 2.58373 2.81940 3.27249 3.34880 3.52933 3.66179 3.73503 3.77403 3.95667 4.06468 4.12377 4.16438 4.18634 4.25438 4.32056 4.39424 4.46480 4.53096 4.59198 4.60305 4.61122 4.66334 4.69171 4.70763 4.75570 4.78517 4.84545 4.91885 4.93404 5.06210 5.07071 5.18083 5.22991 5.29923 5.31364 5.39991 5.55900 5.77814 6.04821 6.06557 6.11064 6.28858 6.44241 7.10983 7.16371 7.39677 7.72439 8.64879 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.010208 B = 0.004521 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2742.189704 B = 6192.435763 C = 7854.651706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.242 3.758 3 H -0.001 1.001 4 C -0.609 4.609 5 H 0.063 0.937 6 C -0.019 4.019 7 N -0.921 5.921 8 Si 1.126 2.874 9 H -0.263 1.263 10 H -0.277 1.277 11 H -0.287 1.287 12 N -0.707 5.707 13 C 0.515 3.485 14 O -0.597 6.597 15 C -0.066 4.066 16 C -0.118 4.118 17 C 0.499 3.501 18 O -0.560 6.560 19 N -0.622 5.622 20 C 0.069 3.931 21 C 0.040 3.960 22 O -0.390 6.390 23 C 0.054 3.946 24 C 0.077 3.923 25 C -0.103 4.103 26 C -0.126 4.126 27 C -0.118 4.118 28 C -0.095 4.095 29 H 0.051 0.949 30 H 0.012 0.988 31 H 0.055 0.945 32 H 0.255 0.745 33 H 0.393 0.607 34 H 0.149 0.851 35 H 0.114 0.886 36 H 0.099 0.901 37 H 0.119 0.881 38 H 0.046 0.954 39 H 0.137 0.863 40 H 0.038 0.962 41 H 0.125 0.875 42 H 0.072 0.928 43 H 0.089 0.911 44 H 0.062 0.938 45 H 0.126 0.874 46 H 0.095 0.905 47 H 0.018 0.982 48 H 0.097 0.903 49 H 0.036 0.964 50 H 0.083 0.917 51 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.700 -15.930 -15.505 23.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.140 3.860 3 H 0.017 0.983 4 C -0.647 4.647 5 H 0.082 0.918 6 C -0.220 4.220 7 N -0.557 5.557 8 Si 0.947 3.053 9 H -0.187 1.187 10 H -0.203 1.203 11 H -0.213 1.213 12 N -0.357 5.357 13 C 0.302 3.698 14 O -0.477 6.477 15 C -0.070 4.070 16 C -0.158 4.158 17 C 0.289 3.711 18 O -0.438 6.438 19 N -0.357 5.357 20 C -0.053 4.053 21 C -0.037 4.037 22 O -0.308 6.308 23 C -0.023 4.023 24 C -0.046 4.046 25 C -0.140 4.140 26 C -0.164 4.164 27 C -0.156 4.156 28 C -0.133 4.133 29 H 0.070 0.930 30 H 0.032 0.968 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.228 0.772 34 H 0.167 0.833 35 H 0.132 0.868 36 H 0.117 0.883 37 H 0.137 0.863 38 H 0.064 0.936 39 H 0.155 0.845 40 H 0.057 0.943 41 H 0.143 0.857 42 H 0.090 0.910 43 H 0.108 0.892 44 H 0.081 0.919 45 H 0.144 0.856 46 H 0.114 0.886 47 H 0.037 0.963 48 H 0.115 0.885 49 H 0.055 0.945 50 H 0.102 0.898 51 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -5.872 -14.530 -14.443 21.312 hybrid contribution -1.105 0.985 -0.673 1.626 sum -6.977 -13.545 -15.115 21.462 Atomic orbital electron populations 1.21826 0.97372 1.00021 0.98832 1.18545 0.90729 0.92656 0.84092 0.98328 1.22313 1.11256 1.20009 1.11166 0.91840 1.27508 0.93296 0.95467 1.05754 1.70836 1.37804 1.26512 1.20508 0.82840 0.76347 0.75575 0.70558 1.18689 1.20308 1.21274 1.47017 1.65675 1.13637 1.09386 1.20939 0.75760 0.87362 0.85702 1.90557 1.52927 1.17830 1.86423 1.21447 0.96788 0.95902 0.92815 1.21856 0.89602 0.97820 1.06514 1.21270 0.86685 0.87490 0.75690 1.90845 1.85833 1.15986 1.51098 1.48276 1.08065 1.08390 1.70989 1.22840 1.02107 0.77633 1.02677 1.23290 0.83203 0.99738 0.97485 1.87933 1.35575 1.20657 1.86677 1.22941 1.00335 0.81325 0.97739 1.22225 0.83153 0.98076 1.01140 1.22705 0.90185 0.97966 1.03183 1.22389 0.99966 0.96766 0.97251 1.22120 0.94883 0.98934 0.99650 1.22003 0.96271 0.98683 0.96333 0.92960 0.96839 0.92605 0.93446 0.77189 0.83286 0.86842 0.88312 0.86270 0.93597 0.84519 0.94332 0.85697 0.90954 0.89239 0.91941 0.85566 0.88609 0.96275 0.88482 0.94525 0.89821 0.93821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.80 9.47 71.99 0.68 -5.12 16 2 C 0.24 12.90 2.38 44.25 0.11 13.01 16 3 H 0.00 -0.09 5.97 -2.39 -0.01 -0.10 16 4 C -0.61 -32.77 8.49 25.60 0.22 -32.55 16 5 H 0.06 3.26 7.82 -2.91 -0.02 3.23 16 6 C -0.02 -1.05 5.45 84.66 0.46 -0.59 16 7 N -0.92 -56.91 13.62 21.45 0.29 -56.61 16 8 Si 1.13 48.07 29.91 68.60 2.05 50.12 16 9 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 10 H -0.28 -11.39 7.11 99.48 0.71 -10.68 16 11 H -0.29 -12.24 7.11 99.48 0.71 -11.54 16 12 N -0.71 -32.21 4.84 -446.10 -2.16 -34.37 16 13 C 0.52 23.32 4.91 87.66 0.43 23.75 16 14 O -0.60 -34.03 14.38 10.45 0.15 -33.88 16 15 C -0.07 -2.07 0.41 -51.85 -0.02 -2.09 16 16 C -0.12 -2.66 3.04 29.85 0.09 -2.57 16 17 C 0.50 14.71 7.20 87.66 0.63 15.34 16 18 O -0.56 -23.13 12.39 10.45 0.13 -23.00 16 19 N -0.62 -13.94 3.01 -816.64 -2.46 -16.40 16 20 C 0.07 0.90 6.58 86.49 0.57 1.47 16 21 C 0.04 0.56 7.00 72.22 0.51 1.07 16 22 O -0.39 -7.46 10.74 -148.98 -1.60 -9.06 16 23 C 0.05 1.07 6.98 72.07 0.50 1.57 16 24 C 0.08 1.73 6.63 86.34 0.57 2.30 16 25 C -0.10 -2.65 5.79 32.01 0.19 -2.47 16 26 C -0.13 -3.78 6.62 31.79 0.21 -3.57 16 27 C -0.12 -3.46 6.80 31.32 0.21 -3.25 16 28 C -0.10 -3.10 4.57 31.32 0.14 -2.95 16 29 H 0.05 2.41 8.14 -2.39 -0.02 2.39 16 30 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 32 H 0.25 16.86 6.65 -92.71 -0.62 16.24 16 33 H 0.39 15.68 7.81 -92.70 -0.72 14.95 16 34 H 0.15 1.89 8.09 -2.39 -0.02 1.87 16 35 H 0.11 2.14 7.39 -2.39 -0.02 2.12 16 36 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.12 0.99 6.02 -2.39 -0.01 0.97 16 38 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.14 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.04 0.90 8.14 -2.38 -0.02 0.88 16 41 H 0.13 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.07 2.06 7.08 -2.39 -0.02 2.04 16 43 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.06 1.80 7.26 -2.39 -0.02 1.78 16 45 H 0.13 1.97 8.06 -2.39 -0.02 1.95 16 46 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 47 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 48 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 49 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 50 H 0.08 2.18 7.83 -2.39 -0.02 2.16 16 51 H 0.04 1.89 6.08 -2.38 -0.01 1.88 16 Total: -1.00 -85.88 394.43 2.25 -83.62 By element: Atomic # 1 Polarization: 35.88 SS G_CDS: 0.35 Total: 36.24 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: 5.50 Total: 3.34 kcal Atomic # 7 Polarization: -103.06 SS G_CDS: -4.33 Total: -107.39 kcal Atomic # 8 Polarization: -64.61 SS G_CDS: -1.32 Total: -65.93 kcal Atomic # 14 Polarization: 48.07 SS G_CDS: 2.05 Total: 50.12 kcal Total: -85.88 2.25 -83.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356421221.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.346 kcal (2) G-P(sol) polarization free energy of solvation -85.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds