Wall clock time and date at job start Sat Apr 11 2020 05:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.48756 * 2 1 4 4 C 1.53091 * 109.48056 * 120.03097 * 2 1 3 5 5 C 1.53178 * 109.15988 * 177.59324 * 4 2 1 6 6 H 1.08999 * 109.54447 * 62.89102 * 5 4 2 7 7 C 1.53009 * 109.54217 * 183.15202 * 5 4 2 8 8 C 1.52999 * 109.47064 * 184.55392 * 7 5 4 9 9 N 1.46494 * 109.46841 * 179.97438 * 8 7 5 10 10 C 1.34776 * 120.00015 * 179.97438 * 9 8 7 11 11 O 1.21356 * 120.00071 * 0.02562 * 10 9 8 12 12 C 1.49454 * 120.00265 * 180.02562 * 10 9 8 13 13 O 1.21344 * 119.99950 * 354.94773 * 12 10 9 14 14 N 1.34777 * 120.00044 * 174.95372 * 12 10 9 15 15 C 1.46499 * 119.99836 * 185.06209 * 14 12 10 16 16 C 1.53004 * 109.46926 * 185.00361 * 15 14 12 17 17 C 1.50701 * 115.55091 * 269.60239 * 16 15 14 18 18 H 1.08005 * 119.99494 * 95.25010 * 17 16 15 19 19 C 1.37870 * 120.00558 * 275.25234 * 17 16 15 20 20 N 1.31511 * 119.99916 * 5.14280 * 19 17 16 21 21 Si 1.86798 * 120.00256 * 185.14869 * 19 17 16 22 22 H 1.48500 * 109.47206 * 59.99489 * 21 19 17 23 23 H 1.48496 * 109.47186 * 179.97438 * 21 19 17 24 24 H 1.48507 * 109.46712 * 299.99908 * 21 19 17 25 25 C 1.53002 * 117.49420 * 123.90070 * 16 15 14 26 26 C 1.52999 * 117.49829 * 55.28114 * 16 15 14 27 27 C 1.53173 * 109.03776 * 303.01754 * 5 4 2 28 28 C 1.53095 * 109.21463 * 56.95290 * 27 5 4 29 29 O 1.42904 * 109.48027 * 239.97721 * 2 1 3 30 30 H 1.09004 * 109.47475 * 299.96766 * 1 2 3 31 31 H 1.09006 * 109.47410 * 59.96849 * 1 2 3 32 32 H 1.09000 * 109.47312 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.52475 * 57.69082 * 4 2 1 34 34 H 1.08997 * 109.57082 * 297.52820 * 4 2 1 35 35 H 1.08994 * 109.46952 * 304.55671 * 7 5 4 36 36 H 1.09002 * 109.46881 * 64.55526 * 7 5 4 37 37 H 1.09002 * 109.47275 * 300.00232 * 8 7 5 38 38 H 1.08999 * 109.46666 * 60.00346 * 8 7 5 39 39 H 0.97001 * 120.00283 * 0.02562 * 9 8 7 40 40 H 0.97002 * 120.00199 * 5.05605 * 14 12 10 41 41 H 1.09003 * 109.47383 * 305.00476 * 15 14 12 42 42 H 1.09005 * 109.46925 * 65.00512 * 15 14 12 43 43 H 0.97004 * 120.00125 * 185.00003 * 20 19 17 44 44 H 1.08996 * 117.50406 * 0.02562 * 25 16 15 45 45 H 1.09006 * 117.49415 * 145.02276 * 25 16 15 46 46 H 1.09000 * 117.49709 * 214.97516 * 26 16 15 47 47 H 1.08994 * 117.49772 * 359.97438 * 26 16 15 48 48 H 1.09008 * 109.52330 * 176.88422 * 27 5 4 49 49 H 1.08997 * 109.52572 * 297.01685 * 27 5 4 50 50 H 1.08997 * 109.47720 * 62.40584 * 28 27 5 51 51 H 1.09005 * 109.48105 * 182.44050 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0405 -0.7223 1.2495 5 6 3.5711 -0.7708 1.2121 6 1 3.9689 0.2436 1.2408 7 6 4.0878 -1.5595 2.4171 8 6 5.6168 -1.5110 2.4408 9 7 6.1115 -2.2655 3.5949 10 6 7.4369 -2.3613 3.8196 11 8 8.2206 -1.8221 3.0661 12 6 7.9416 -3.1316 4.9967 13 8 7.1587 -3.5932 5.8007 14 7 9.2664 -3.3134 5.1653 15 6 9.7565 -4.1606 6.2554 16 6 11.2847 -4.0994 6.3011 17 6 12.0017 -5.1367 5.4758 18 1 12.3325 -4.8970 4.4760 19 6 12.2353 -6.3915 5.9969 20 7 11.7451 -6.7168 7.1731 21 14 13.2482 -7.6297 5.0324 22 1 14.6076 -7.0805 4.7963 23 1 13.3527 -8.8932 5.8055 24 1 12.5900 -7.8994 3.7288 25 6 11.9354 -3.6702 7.6177 26 6 11.9332 -2.7188 6.4194 27 6 4.0176 -1.4600 -0.0810 28 6 3.4307 -0.7105 -1.2800 29 8 2.0065 -0.6741 -1.1665 30 1 -0.3634 0.5133 0.8903 31 1 -0.3634 0.5143 -0.8897 32 1 -0.3634 -1.0277 -0.0005 33 1 1.6444 -1.7375 1.2708 34 1 1.7148 -0.1853 2.1404 35 1 3.6960 -1.1196 3.3342 36 1 3.7583 -2.5958 2.3415 37 1 6.0086 -1.9508 1.5236 38 1 5.9463 -0.4747 2.5164 39 1 5.4851 -2.6969 4.1970 40 1 9.8953 -2.8835 4.5648 41 1 9.3502 -3.8054 7.2025 42 1 9.4389 -5.1896 6.0868 43 1 11.9690 -7.5721 7.5722 44 1 11.2749 -3.4317 8.4513 45 1 12.8823 -4.1381 7.8871 46 1 12.8787 -2.5607 5.9006 47 1 11.2713 -1.8540 6.4643 48 1 5.1059 -1.4496 -0.1422 49 1 3.6623 -2.4904 -0.0861 50 1 3.8192 0.3077 -1.2977 51 1 3.7100 -1.2225 -2.2009 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342844953.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:28:21 Heat of formation + Delta-G solvation = -118.203536 kcal Electronic energy + Delta-G solvation = -28819.591645 eV Core-core repulsion = 24718.815174 eV Total energy + Delta-G solvation = -4100.776470 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.40167 -39.96793 -38.31893 -36.78139 -36.44505 -34.38402 -33.31412 -33.15136 -31.97592 -30.07573 -28.18148 -27.08339 -25.57440 -24.70114 -23.67049 -22.63505 -21.46468 -21.26336 -20.61521 -19.80979 -19.44008 -18.12065 -16.77302 -16.70071 -16.20506 -16.15798 -16.04813 -15.52353 -15.26185 -14.91101 -14.83510 -14.65123 -14.48517 -14.12259 -13.88437 -13.42064 -13.27303 -13.04073 -12.77686 -12.68618 -12.63622 -12.35761 -12.23117 -11.88580 -11.79142 -11.58556 -11.52974 -11.39539 -11.24440 -11.05114 -10.92560 -10.81986 -10.65453 -10.56790 -10.30861 -9.85760 -9.71894 -9.32611 -9.27767 -9.03352 -8.52227 -8.40065 -8.26663 -6.11111 -4.19400 1.72516 2.61607 3.27698 3.33078 3.35427 3.37177 3.54386 3.93180 4.13597 4.24588 4.35167 4.38424 4.51840 4.66187 4.78351 4.79560 4.87038 4.90733 5.01814 5.09143 5.14440 5.17853 5.24255 5.28193 5.29737 5.32886 5.42850 5.50738 5.56952 5.63873 5.66857 5.76347 5.78995 5.93885 5.95970 6.18388 6.28831 6.34525 6.50556 6.62333 6.70692 6.85987 6.94269 7.03554 7.17602 7.36421 7.43331 7.77897 7.80124 8.07270 8.30625 8.45136 8.83051 9.48033 10.97395 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.021177 B = 0.001763 C = 0.001710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.842549 B =15874.483071 C =16368.297420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.085 3.915 3 H 0.057 0.943 4 C -0.145 4.145 5 C -0.085 4.085 6 H 0.076 0.924 7 C -0.127 4.127 8 C 0.116 3.884 9 N -0.708 5.708 10 C 0.508 3.492 11 O -0.522 6.522 12 C 0.495 3.505 13 O -0.537 6.537 14 N -0.675 5.675 15 C 0.159 3.841 16 C 0.024 3.976 17 C -0.500 4.500 18 H 0.061 0.939 19 C 0.072 3.928 20 N -0.875 5.875 21 Si 0.892 3.108 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.276 1.276 25 C -0.145 4.145 26 C -0.209 4.209 27 C -0.157 4.157 28 C 0.062 3.938 29 O -0.382 6.382 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.412 0.588 40 H 0.411 0.589 41 H 0.051 0.949 42 H 0.078 0.922 43 H 0.262 0.738 44 H 0.066 0.934 45 H 0.085 0.915 46 H 0.081 0.919 47 H 0.067 0.933 48 H 0.079 0.921 49 H 0.074 0.926 50 H 0.050 0.950 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.744 13.462 -11.941 26.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.028 3.972 3 H 0.075 0.925 4 C -0.182 4.182 5 C -0.105 4.105 6 H 0.094 0.906 7 C -0.164 4.164 8 C -0.007 4.007 9 N -0.362 5.362 10 C 0.289 3.711 11 O -0.397 6.397 12 C 0.274 3.726 13 O -0.416 6.416 14 N -0.325 5.325 15 C 0.037 3.963 16 C 0.024 3.976 17 C -0.537 4.537 18 H 0.079 0.921 19 C -0.132 4.132 20 N -0.511 5.511 21 Si 0.719 3.281 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.201 1.201 25 C -0.183 4.183 26 C -0.246 4.246 27 C -0.194 4.194 28 C -0.015 4.015 29 O -0.301 6.301 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.248 0.752 40 H 0.246 0.754 41 H 0.069 0.931 42 H 0.097 0.903 43 H 0.072 0.928 44 H 0.084 0.916 45 H 0.103 0.897 46 H 0.099 0.901 47 H 0.085 0.915 48 H 0.097 0.903 49 H 0.093 0.907 50 H 0.068 0.932 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -19.894 13.222 -11.929 26.700 hybrid contribution 0.853 -0.670 -0.151 1.095 sum -19.041 12.552 -12.080 25.808 Atomic orbital electron populations 1.21772 0.93102 1.03003 1.02414 1.22088 0.95037 0.94959 0.85141 0.92524 1.22283 0.95207 1.02264 0.98473 1.21129 0.95366 0.99747 0.94210 0.90597 1.21843 0.94065 1.01702 0.98835 1.21495 0.93741 0.96732 0.88726 1.45755 1.06970 1.54002 1.29447 1.20519 0.83051 0.81317 0.86230 1.90747 1.55600 1.45943 1.47387 1.19953 0.84315 0.82173 0.86133 1.90721 1.55762 1.50484 1.44612 1.46108 1.05465 1.47909 1.32981 1.21399 0.94927 0.93588 0.86396 1.19077 0.88823 0.92027 0.97723 1.20384 1.37635 0.95154 1.00558 0.92054 1.24986 0.95171 0.97747 0.95297 1.69997 1.41961 1.22762 1.16406 0.86672 0.80813 0.80513 0.80106 1.20205 1.21247 1.20137 1.22540 1.02479 1.02331 0.90956 1.22988 1.02446 0.93907 1.05273 1.22356 1.01666 1.00733 0.94681 1.22569 0.80845 0.99619 0.98459 1.87931 1.21162 1.78022 1.43020 0.91069 0.91888 0.91767 0.90765 0.90715 0.90743 0.90737 0.90861 0.91144 0.75171 0.75362 0.93098 0.90333 0.92772 0.91589 0.89694 0.90052 0.91490 0.90271 0.90721 0.93209 0.88761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.56 37.16 0.36 -0.44 16 2 C 0.09 0.56 3.27 -26.68 -0.09 0.47 16 3 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 4 C -0.14 -0.85 4.71 -26.59 -0.13 -0.98 16 5 C -0.09 -0.52 2.28 -90.43 -0.21 -0.73 16 6 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 7 C -0.13 -0.84 4.81 -26.73 -0.13 -0.97 16 8 C 0.12 1.08 5.43 -4.05 -0.02 1.05 16 9 N -0.71 -8.44 5.55 -60.73 -0.34 -8.78 16 10 C 0.51 8.02 7.89 -11.58 -0.09 7.93 16 11 O -0.52 -9.20 16.49 5.49 0.09 -9.11 16 12 C 0.49 9.09 7.88 -11.58 -0.09 9.00 16 13 O -0.54 -10.79 16.47 5.50 0.09 -10.70 16 14 N -0.67 -13.17 5.40 -60.73 -0.33 -13.49 16 15 C 0.16 3.55 5.71 -4.04 -0.02 3.53 16 16 C 0.02 0.57 1.46 -155.66 -0.23 0.35 16 17 C -0.50 -13.03 8.77 -34.44 -0.30 -13.33 16 18 H 0.06 1.59 7.82 -52.48 -0.41 1.18 16 19 C 0.07 1.91 5.40 -17.82 -0.10 1.81 16 20 N -0.88 -24.04 12.91 55.43 0.72 -23.33 16 21 Si 0.89 20.64 29.54 -169.99 -5.02 15.62 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 23 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 C -0.15 -3.26 9.38 -26.73 -0.25 -3.51 16 26 C -0.21 -4.30 9.50 -26.73 -0.25 -4.56 16 27 C -0.16 -1.03 5.09 -26.59 -0.14 -1.17 16 28 C 0.06 0.42 6.85 37.21 0.25 0.67 16 29 O -0.38 -3.27 10.40 -35.23 -0.37 -3.64 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.71 6.65 -51.93 -0.35 0.37 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.41 4.46 7.96 -40.82 -0.32 4.13 16 40 H 0.41 7.75 7.70 -40.82 -0.31 7.43 16 41 H 0.05 1.14 7.83 -51.93 -0.41 0.73 16 42 H 0.08 1.97 8.04 -51.93 -0.42 1.55 16 43 H 0.26 6.94 8.32 -40.82 -0.34 6.60 16 44 H 0.07 1.40 8.03 -51.93 -0.42 0.98 16 45 H 0.08 2.03 8.14 -51.93 -0.42 1.60 16 46 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 47 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 48 H 0.08 0.51 6.74 -51.92 -0.35 0.16 16 49 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 50 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 51 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 415.39 15.07 6.26 6.26 Total: -1.00 -29.98 415.39 -9.21 -39.19 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: -8.89 Total: 8.84 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: -1.43 Total: -0.86 kcal Atomic # 7 Polarization: -45.65 SS G_CDS: 0.05 Total: -45.60 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: -0.19 Total: -23.45 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -29.98 -9.21 -39.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342844953.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.013 kcal (2) G-P(sol) polarization free energy of solvation -29.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds