Wall clock time and date at job start Sat Apr 11 2020 05:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.48756 * 2 1 4 4 C 1.53091 * 109.48056 * 120.03097 * 2 1 3 5 5 C 1.53178 * 109.15988 * 177.59324 * 4 2 1 6 6 H 1.08999 * 109.54447 * 62.89102 * 5 4 2 7 7 C 1.53009 * 109.54217 * 183.15202 * 5 4 2 8 8 C 1.52999 * 109.47064 * 184.55392 * 7 5 4 9 9 N 1.46494 * 109.46841 * 179.97438 * 8 7 5 10 10 C 1.34776 * 120.00015 * 179.97438 * 9 8 7 11 11 O 1.21356 * 120.00071 * 0.02562 * 10 9 8 12 12 C 1.49454 * 120.00265 * 180.02562 * 10 9 8 13 13 O 1.21344 * 119.99950 * 354.94773 * 12 10 9 14 14 N 1.34777 * 120.00044 * 174.95372 * 12 10 9 15 15 C 1.46499 * 119.99836 * 185.06209 * 14 12 10 16 16 C 1.53004 * 109.46926 * 185.00361 * 15 14 12 17 17 C 1.50701 * 115.55091 * 269.60239 * 16 15 14 18 18 H 1.08005 * 119.99494 * 95.25010 * 17 16 15 19 19 C 1.37870 * 120.00558 * 275.25234 * 17 16 15 20 20 N 1.31511 * 119.99916 * 5.14280 * 19 17 16 21 21 Si 1.86798 * 120.00256 * 185.14869 * 19 17 16 22 22 H 1.48500 * 109.47206 * 59.99489 * 21 19 17 23 23 H 1.48496 * 109.47186 * 179.97438 * 21 19 17 24 24 H 1.48507 * 109.46712 * 299.99908 * 21 19 17 25 25 C 1.53002 * 117.49420 * 123.90070 * 16 15 14 26 26 C 1.52999 * 117.49829 * 55.28114 * 16 15 14 27 27 C 1.53173 * 109.03776 * 303.01754 * 5 4 2 28 28 C 1.53095 * 109.21463 * 56.95290 * 27 5 4 29 29 O 1.42904 * 109.48027 * 239.97721 * 2 1 3 30 30 H 1.09004 * 109.47475 * 299.96766 * 1 2 3 31 31 H 1.09006 * 109.47410 * 59.96849 * 1 2 3 32 32 H 1.09000 * 109.47312 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.52475 * 57.69082 * 4 2 1 34 34 H 1.08997 * 109.57082 * 297.52820 * 4 2 1 35 35 H 1.08994 * 109.46952 * 304.55671 * 7 5 4 36 36 H 1.09002 * 109.46881 * 64.55526 * 7 5 4 37 37 H 1.09002 * 109.47275 * 300.00232 * 8 7 5 38 38 H 1.08999 * 109.46666 * 60.00346 * 8 7 5 39 39 H 0.97001 * 120.00283 * 0.02562 * 9 8 7 40 40 H 0.97002 * 120.00199 * 5.05605 * 14 12 10 41 41 H 1.09003 * 109.47383 * 305.00476 * 15 14 12 42 42 H 1.09005 * 109.46925 * 65.00512 * 15 14 12 43 43 H 0.97004 * 120.00125 * 185.00003 * 20 19 17 44 44 H 1.08996 * 117.50406 * 0.02562 * 25 16 15 45 45 H 1.09006 * 117.49415 * 145.02276 * 25 16 15 46 46 H 1.09000 * 117.49709 * 214.97516 * 26 16 15 47 47 H 1.08994 * 117.49772 * 359.97438 * 26 16 15 48 48 H 1.09008 * 109.52330 * 176.88422 * 27 5 4 49 49 H 1.08997 * 109.52572 * 297.01685 * 27 5 4 50 50 H 1.08997 * 109.47720 * 62.40584 * 28 27 5 51 51 H 1.09005 * 109.48105 * 182.44050 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0405 -0.7223 1.2495 5 6 3.5711 -0.7708 1.2121 6 1 3.9689 0.2436 1.2408 7 6 4.0878 -1.5595 2.4171 8 6 5.6168 -1.5110 2.4408 9 7 6.1115 -2.2655 3.5949 10 6 7.4369 -2.3613 3.8196 11 8 8.2206 -1.8221 3.0661 12 6 7.9416 -3.1316 4.9967 13 8 7.1587 -3.5932 5.8007 14 7 9.2664 -3.3134 5.1653 15 6 9.7565 -4.1606 6.2554 16 6 11.2847 -4.0994 6.3011 17 6 12.0017 -5.1367 5.4758 18 1 12.3325 -4.8970 4.4760 19 6 12.2353 -6.3915 5.9969 20 7 11.7451 -6.7168 7.1731 21 14 13.2482 -7.6297 5.0324 22 1 14.6076 -7.0805 4.7963 23 1 13.3527 -8.8932 5.8055 24 1 12.5900 -7.8994 3.7288 25 6 11.9354 -3.6702 7.6177 26 6 11.9332 -2.7188 6.4194 27 6 4.0176 -1.4600 -0.0810 28 6 3.4307 -0.7105 -1.2800 29 8 2.0065 -0.6741 -1.1665 30 1 -0.3634 0.5133 0.8903 31 1 -0.3634 0.5143 -0.8897 32 1 -0.3634 -1.0277 -0.0005 33 1 1.6444 -1.7375 1.2708 34 1 1.7148 -0.1853 2.1404 35 1 3.6960 -1.1196 3.3342 36 1 3.7583 -2.5958 2.3415 37 1 6.0086 -1.9508 1.5236 38 1 5.9463 -0.4747 2.5164 39 1 5.4851 -2.6969 4.1970 40 1 9.8953 -2.8835 4.5648 41 1 9.3502 -3.8054 7.2025 42 1 9.4389 -5.1896 6.0868 43 1 11.9690 -7.5721 7.5722 44 1 11.2749 -3.4317 8.4513 45 1 12.8823 -4.1381 7.8871 46 1 12.8787 -2.5607 5.9006 47 1 11.2713 -1.8540 6.4643 48 1 5.1059 -1.4496 -0.1422 49 1 3.6623 -2.4904 -0.0861 50 1 3.8192 0.3077 -1.2977 51 1 3.7100 -1.2225 -2.2009 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342844953.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:28:20 Heat of formation + Delta-G solvation = -137.595626 kcal Electronic energy + Delta-G solvation = -28820.432549 eV Core-core repulsion = 24718.815174 eV Total energy + Delta-G solvation = -4101.617374 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.68588 -40.58505 -39.72287 -38.50962 -37.26062 -35.43941 -34.70877 -33.94937 -33.66226 -30.82452 -28.96141 -28.48029 -27.41096 -25.73105 -24.27627 -23.71804 -22.97162 -22.08010 -21.38608 -21.25782 -20.85715 -19.54870 -18.04843 -17.89278 -17.30330 -17.12885 -16.91757 -16.63396 -16.42477 -16.34037 -16.12060 -15.79767 -15.41868 -15.16401 -15.15737 -14.74403 -14.41679 -14.24634 -13.69342 -13.57815 -13.41278 -13.26297 -13.19817 -13.00019 -12.94786 -12.80628 -12.79221 -12.71008 -12.43018 -12.39763 -12.05562 -12.01084 -11.78045 -11.54325 -11.33877 -11.16085 -10.91422 -10.77468 -10.48257 -10.37658 -10.28982 -10.10607 -10.03741 -8.12637 -6.25473 0.35657 1.35445 1.43798 1.44455 1.51464 2.15402 2.42479 2.67865 2.89345 3.16356 3.39725 3.55422 3.58173 3.73584 3.86767 4.03385 4.12399 4.17664 4.19096 4.32104 4.37744 4.49878 4.51840 4.55845 4.57145 4.64158 4.70287 4.72515 4.81987 4.83987 4.88397 4.91447 4.97200 4.98893 5.03085 5.13574 5.14761 5.21824 5.24021 5.24538 5.31949 5.33746 5.46596 5.57915 5.62643 5.75370 5.97195 6.34750 6.36058 6.42519 6.74636 6.82270 6.98124 7.44254 8.95334 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.021177 B = 0.001763 C = 0.001710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.842549 B =15874.483071 C =16368.297420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.079 3.921 3 H 0.062 0.938 4 C -0.140 4.140 5 C -0.082 4.082 6 H 0.082 0.918 7 C -0.117 4.117 8 C 0.114 3.886 9 N -0.688 5.688 10 C 0.514 3.486 11 O -0.541 6.541 12 C 0.495 3.505 13 O -0.555 6.555 14 N -0.676 5.676 15 C 0.177 3.823 16 C -0.002 4.002 17 C -0.511 4.511 18 H 0.057 0.943 19 C 0.027 3.973 20 N -0.903 5.903 21 Si 0.949 3.051 22 H -0.271 1.271 23 H -0.287 1.287 24 H -0.275 1.275 25 C -0.151 4.151 26 C -0.178 4.178 27 C -0.155 4.155 28 C 0.058 3.942 29 O -0.404 6.404 30 H 0.087 0.913 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.419 0.581 40 H 0.415 0.585 41 H 0.048 0.952 42 H 0.044 0.956 43 H 0.261 0.739 44 H 0.075 0.925 45 H 0.065 0.935 46 H 0.086 0.914 47 H 0.090 0.910 48 H 0.080 0.920 49 H 0.066 0.934 50 H 0.057 0.943 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.537 14.767 -12.651 28.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.021 3.979 3 H 0.080 0.920 4 C -0.178 4.178 5 C -0.101 4.101 6 H 0.100 0.900 7 C -0.154 4.154 8 C -0.008 4.008 9 N -0.342 5.342 10 C 0.294 3.706 11 O -0.419 6.419 12 C 0.276 3.724 13 O -0.435 6.435 14 N -0.326 5.326 15 C 0.054 3.946 16 C -0.003 4.003 17 C -0.548 4.548 18 H 0.075 0.925 19 C -0.175 4.175 20 N -0.540 5.540 21 Si 0.775 3.225 22 H -0.196 1.196 23 H -0.212 1.212 24 H -0.200 1.200 25 C -0.189 4.189 26 C -0.215 4.215 27 C -0.193 4.193 28 C -0.018 4.018 29 O -0.324 6.324 30 H 0.106 0.894 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.107 0.893 35 H 0.104 0.896 36 H 0.094 0.906 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.257 0.743 40 H 0.251 0.749 41 H 0.067 0.933 42 H 0.062 0.938 43 H 0.070 0.930 44 H 0.094 0.906 45 H 0.084 0.916 46 H 0.104 0.896 47 H 0.109 0.891 48 H 0.098 0.902 49 H 0.085 0.915 50 H 0.075 0.925 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -20.721 14.544 -12.659 28.304 hybrid contribution 1.020 -1.038 0.037 1.456 sum -19.701 13.506 -12.622 27.016 Atomic orbital electron populations 1.21790 0.92486 1.02796 1.03109 1.22254 0.95638 0.95138 0.84834 0.92003 1.22245 0.94788 1.02019 0.98732 1.21108 0.95627 0.99848 0.93539 0.89980 1.21781 0.91907 1.02114 0.99643 1.21715 0.95449 0.96333 0.87310 1.45774 1.05579 1.52952 1.29855 1.19958 0.84212 0.81243 0.85199 1.90746 1.56334 1.47031 1.47766 1.20437 0.83636 0.81718 0.86633 1.90708 1.56073 1.51195 1.45515 1.45963 1.06235 1.47839 1.32568 1.20904 0.94356 0.92201 0.87129 1.19111 0.89257 0.93555 0.98383 1.20672 1.37498 0.95994 1.00674 0.92506 1.25659 0.96268 0.99400 0.96128 1.70097 1.43110 1.23106 1.17708 0.85765 0.79587 0.78420 0.78757 1.19622 1.21211 1.20005 1.22478 1.01698 1.03244 0.91468 1.22974 1.02451 0.93166 1.02917 1.22332 1.01631 1.00316 0.95012 1.22655 0.80279 1.00128 0.98765 1.87906 1.22017 1.78438 1.44064 0.89406 0.92194 0.92397 0.91426 0.89298 0.89563 0.90568 0.91055 0.90793 0.74339 0.74874 0.93327 0.93788 0.92990 0.90624 0.91599 0.89587 0.89136 0.90186 0.91524 0.92512 0.88437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 9.56 71.98 0.69 -0.70 16 2 C 0.08 0.92 3.27 30.62 0.10 1.02 16 3 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 4 C -0.14 -1.37 4.71 30.68 0.14 -1.22 16 5 C -0.08 -0.84 2.28 -10.67 -0.02 -0.86 16 6 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 7 C -0.12 -1.26 4.81 30.60 0.15 -1.11 16 8 C 0.11 1.86 5.43 86.38 0.47 2.33 16 9 N -0.69 -15.13 5.55 -464.41 -2.58 -17.71 16 10 C 0.51 15.54 7.89 87.27 0.69 16.23 16 11 O -0.54 -18.35 16.49 -3.26 -0.05 -18.40 16 12 C 0.50 17.83 7.88 87.27 0.69 18.52 16 13 O -0.56 -22.01 16.47 -3.23 -0.05 -22.06 16 14 N -0.68 -26.08 5.40 -464.40 -2.51 -28.59 16 15 C 0.18 7.98 5.71 86.38 0.49 8.48 16 16 C 0.00 -0.10 1.46 -52.93 -0.08 -0.18 16 17 C -0.51 -26.71 8.77 25.60 0.22 -26.49 16 18 H 0.06 2.95 7.82 -2.91 -0.02 2.92 16 19 C 0.03 1.42 5.40 84.65 0.46 1.87 16 20 N -0.90 -50.34 12.91 21.44 0.28 -50.06 16 21 Si 0.95 42.53 29.54 68.60 2.03 44.55 16 22 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 23 H -0.29 -12.72 7.11 99.48 0.71 -12.02 16 24 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 25 C -0.15 -6.73 9.38 30.59 0.29 -6.45 16 26 C -0.18 -7.06 9.50 30.59 0.29 -6.77 16 27 C -0.16 -1.84 5.09 30.68 0.16 -1.68 16 28 C 0.06 0.73 6.85 72.01 0.49 1.22 16 29 O -0.40 -6.57 10.40 -148.98 -1.55 -8.12 16 30 H 0.09 0.53 8.14 -2.38 -0.02 0.51 16 31 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 32 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.07 1.25 6.65 -2.39 -0.02 1.24 16 38 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.42 8.22 7.96 -92.71 -0.74 7.48 16 40 H 0.41 15.32 7.70 -92.71 -0.71 14.61 16 41 H 0.05 2.18 7.83 -2.39 -0.02 2.16 16 42 H 0.04 2.26 8.04 -2.38 -0.02 2.24 16 43 H 0.26 14.01 8.32 -92.71 -0.77 13.24 16 44 H 0.08 3.18 8.03 -2.39 -0.02 3.16 16 45 H 0.07 3.17 8.14 -2.38 -0.02 3.15 16 46 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 47 H 0.09 3.17 8.14 -2.39 -0.02 3.16 16 48 H 0.08 0.92 6.74 -2.38 -0.02 0.91 16 49 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 50 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 51 H 0.10 1.10 8.14 -2.38 -0.02 1.08 16 Total: -1.00 -63.68 415.39 0.27 -63.41 By element: Atomic # 1 Polarization: 33.29 SS G_CDS: -0.52 Total: 32.77 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: 5.23 Total: 4.21 kcal Atomic # 7 Polarization: -91.55 SS G_CDS: -4.81 Total: -96.36 kcal Atomic # 8 Polarization: -46.93 SS G_CDS: -1.66 Total: -48.59 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.55 kcal Total: -63.68 0.27 -63.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342844953.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.181 kcal (2) G-P(sol) polarization free energy of solvation -63.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds