Wall clock time and date at job start Sat Apr 11 2020 05:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09008 * 109.47906 * 2 1 4 4 C 1.53091 * 109.48462 * 239.97951 * 2 1 3 5 5 C 1.53183 * 109.15786 * 297.61080 * 4 2 1 6 6 C 1.53178 * 109.03775 * 303.01923 * 5 4 2 7 7 C 1.53086 * 109.16521 * 56.98041 * 6 5 4 8 8 H 1.09004 * 109.47998 * 62.37447 * 7 6 5 9 9 C 1.52992 * 109.48171 * 182.39621 * 7 6 5 10 10 N 1.46504 * 109.47227 * 185.00179 * 9 7 6 11 11 C 1.34781 * 120.00262 * 180.02562 * 10 9 7 12 12 O 1.21345 * 119.99510 * 359.97438 * 11 10 9 13 13 C 1.49446 * 120.00350 * 180.02562 * 11 10 9 14 14 O 1.21355 * 119.99978 * 6.73443 * 13 11 10 15 15 N 1.34775 * 120.00303 * 186.73839 * 13 11 10 16 16 C 1.46928 * 120.62816 * 8.42656 * 15 13 11 17 17 C 1.53621 * 108.54585 * 126.36682 * 16 15 13 18 18 C 1.53047 * 109.24100 * 54.85183 * 17 16 15 19 19 C 1.53043 * 109.53893 * 298.51394 * 18 17 16 20 20 H 1.09004 * 109.52004 * 301.39642 * 19 18 17 21 21 C 1.50695 * 109.49619 * 181.31872 * 19 18 17 22 22 H 1.07997 * 120.00137 * 0.15484 * 21 19 18 23 23 C 1.37878 * 119.99853 * 180.16445 * 21 19 18 24 24 N 1.31514 * 120.00079 * 359.97438 * 23 21 19 25 25 Si 1.86801 * 119.99877 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.47338 * 59.99686 * 25 23 21 27 27 H 1.48499 * 109.47090 * 179.97438 * 25 23 21 28 28 H 1.48502 * 109.46988 * 299.99839 * 25 23 21 29 29 C 1.46922 * 120.63022 * 188.70032 * 15 13 11 30 30 O 1.42903 * 109.49360 * 120.02529 * 2 1 3 31 31 H 1.09003 * 109.46763 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47095 * 299.99533 * 1 2 3 33 33 H 1.08994 * 109.47212 * 60.00261 * 1 2 3 34 34 H 1.08997 * 109.52459 * 57.51517 * 4 2 1 35 35 H 1.09001 * 109.52619 * 177.64544 * 4 2 1 36 36 H 1.09004 * 109.54376 * 62.88676 * 5 4 2 37 37 H 1.09007 * 109.54161 * 183.15264 * 5 4 2 38 38 H 1.09002 * 109.51885 * 176.89133 * 6 5 4 39 39 H 1.09003 * 109.52045 * 297.07273 * 6 5 4 40 40 H 1.08997 * 109.47436 * 305.00125 * 9 7 6 41 41 H 1.08998 * 109.47221 * 65.00510 * 9 7 6 42 42 H 0.97004 * 119.99885 * 359.97438 * 10 9 7 43 43 H 1.08994 * 109.58247 * 246.20179 * 16 15 13 44 44 H 1.09005 * 109.58552 * 6.62067 * 16 15 13 45 45 H 1.09004 * 109.63505 * 294.86444 * 17 16 15 46 46 H 1.08992 * 109.45818 * 174.74108 * 17 16 15 47 47 H 1.08996 * 109.45786 * 178.49132 * 18 17 16 48 48 H 1.09001 * 109.44797 * 58.52623 * 18 17 16 49 49 H 0.97001 * 119.99729 * 180.02562 * 24 23 21 50 50 H 1.09004 * 109.59071 * 353.37457 * 29 15 13 51 51 H 1.09001 * 109.58229 * 113.65695 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0277 0.0000 4 6 2.0406 -0.7221 -1.2496 5 6 1.5761 -2.1813 -1.2121 6 6 2.0771 -2.8321 0.0809 7 6 1.5651 -2.0285 1.2791 8 1 0.4755 -2.0552 1.2959 9 6 2.1105 -2.6374 2.5723 10 7 1.5265 -1.9436 3.7229 11 6 1.8640 -2.3122 4.9747 12 8 2.6513 -3.2191 5.1485 13 6 1.2679 -1.6049 6.1484 14 8 0.3904 -0.7836 5.9804 15 7 1.7047 -1.8791 7.3936 16 6 2.8852 -2.7285 7.6026 17 6 3.8807 -1.9708 8.4940 18 6 3.1780 -1.5432 9.7846 19 6 2.0193 -0.6015 9.4486 20 1 2.4004 0.2687 8.9141 21 6 1.3482 -0.1555 10.7220 22 1 1.7130 -0.5061 11.6761 23 6 0.2683 0.7001 10.6691 24 7 -0.1758 1.1274 9.5073 25 14 -0.5639 1.2525 12.2476 26 1 0.4186 1.9673 13.1014 27 1 -1.6902 2.1635 11.9208 28 1 -1.0816 0.0661 12.9756 29 6 1.0059 -1.3392 8.5678 30 8 2.0069 -0.6741 1.1663 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 1.6420 -0.2357 -2.1399 35 1 3.1298 -0.6861 -1.2717 36 1 0.4870 -2.2181 -1.2407 37 1 1.9830 -2.7156 -2.0707 38 1 1.7045 -3.8546 0.1420 39 1 3.1670 -2.8397 0.0862 40 1 1.8491 -3.6947 2.6146 41 1 3.1949 -2.5300 2.5954 42 1 0.8974 -1.2184 3.5839 43 1 2.5860 -3.6560 8.0907 44 1 3.3493 -2.9520 6.6419 45 1 4.2447 -1.0880 7.9683 46 1 4.7205 -2.6222 8.7356 47 1 3.8884 -1.0285 10.4314 48 1 2.7926 -2.4246 10.2972 49 1 -0.9353 1.7296 9.4701 50 1 0.2298 -0.6456 8.2444 51 1 0.5546 -2.1556 9.1317 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347679801.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:28:30 Heat of formation + Delta-G solvation = -119.626085 kcal Electronic energy + Delta-G solvation = -30497.304274 eV Core-core repulsion = 26396.466117 eV Total energy + Delta-G solvation = -4100.838156 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.58853 -40.04031 -38.20829 -36.77689 -35.28963 -34.01483 -33.25571 -32.49988 -31.67370 -29.70802 -29.20446 -26.99567 -25.49386 -24.92238 -23.63888 -22.97104 -21.85077 -21.74164 -20.17730 -19.57281 -18.82399 -17.31117 -16.78527 -16.59829 -16.38984 -16.07681 -15.61158 -15.40808 -15.17254 -14.83744 -14.49037 -14.44087 -13.98819 -13.66993 -13.56555 -13.21833 -13.10639 -13.06738 -12.86179 -12.75906 -12.54020 -12.35426 -12.10976 -12.08095 -11.76416 -11.58965 -11.37827 -11.32014 -11.10972 -10.93976 -10.69229 -10.43833 -10.43336 -10.26573 -10.08848 -9.83995 -9.72919 -9.19942 -9.17000 -9.07451 -8.54043 -8.41409 -7.77134 -5.98282 -4.07064 1.87068 2.74722 3.33298 3.35732 3.38769 3.40484 3.70489 4.00052 4.28502 4.39417 4.43154 4.44307 4.56489 4.71216 4.76563 4.83183 4.96458 4.98880 5.15293 5.23533 5.31378 5.32296 5.41799 5.47907 5.56620 5.58933 5.64541 5.66833 5.69772 5.74891 5.82867 5.90274 6.00178 6.14464 6.28739 6.40654 6.57720 6.64188 6.75510 6.88918 6.93740 7.02296 7.07832 7.22381 7.32263 7.62709 7.86607 7.98404 8.02847 8.21518 8.39084 8.63783 8.96755 9.58233 11.06870 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.017673 B = 0.002498 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.925792 B =11206.791648 C =12348.574372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.086 3.914 3 H 0.104 0.896 4 C -0.151 4.151 5 C -0.122 4.122 6 C -0.147 4.147 7 C 0.074 3.926 8 H 0.071 0.929 9 C 0.127 3.873 10 N -0.699 5.699 11 C 0.510 3.490 12 O -0.521 6.521 13 C 0.494 3.506 14 O -0.521 6.521 15 N -0.570 5.570 16 C 0.071 3.929 17 C -0.133 4.133 18 C -0.112 4.112 19 C 0.041 3.959 20 H 0.030 0.970 21 C -0.520 4.520 22 H 0.058 0.942 23 C 0.062 3.938 24 N -0.881 5.881 25 Si 0.893 3.107 26 H -0.277 1.277 27 H -0.287 1.287 28 H -0.277 1.277 29 C 0.108 3.892 30 O -0.367 6.367 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.416 0.584 43 H 0.060 0.940 44 H 0.127 0.873 45 H 0.057 0.943 46 H 0.060 0.940 47 H 0.050 0.950 48 H 0.049 0.951 49 H 0.264 0.736 50 H 0.124 0.876 51 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.774 -7.517 -22.394 23.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.028 3.972 3 H 0.122 0.878 4 C -0.188 4.188 5 C -0.160 4.160 6 C -0.185 4.185 7 C 0.016 3.984 8 H 0.089 0.911 9 C 0.003 3.997 10 N -0.353 5.353 11 C 0.292 3.708 12 O -0.399 6.399 13 C 0.275 3.725 14 O -0.398 6.398 15 N -0.302 5.302 16 C -0.051 4.051 17 C -0.172 4.172 18 C -0.150 4.150 19 C 0.022 3.978 20 H 0.048 0.952 21 C -0.559 4.559 22 H 0.077 0.923 23 C -0.141 4.141 24 N -0.518 5.518 25 Si 0.721 3.279 26 H -0.203 1.203 27 H -0.213 1.213 28 H -0.203 1.203 29 C -0.012 4.012 30 O -0.287 6.287 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.104 0.896 41 H 0.098 0.902 42 H 0.252 0.748 43 H 0.078 0.922 44 H 0.143 0.857 45 H 0.076 0.924 46 H 0.078 0.922 47 H 0.069 0.931 48 H 0.068 0.932 49 H 0.074 0.926 50 H 0.142 0.858 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 3.829 -7.517 -22.288 23.831 hybrid contribution -0.927 0.522 0.592 1.217 sum 2.902 -6.995 -21.696 22.980 Atomic orbital electron populations 1.22488 0.96255 1.02791 1.03147 1.22191 0.93616 0.96484 0.84860 0.87847 1.22200 1.01912 0.96225 0.98498 1.21607 1.01175 0.95686 0.97518 1.22115 1.02382 0.99604 0.94396 1.22343 0.98801 0.83224 0.94030 0.91143 1.21457 0.99478 0.96175 0.82549 1.45717 1.46948 1.38024 1.04573 1.20737 0.81540 0.83758 0.84726 1.90460 1.34342 1.30485 1.84593 1.19809 0.84518 0.83882 0.84296 1.90774 1.31724 1.32472 1.84786 1.48424 1.28380 1.47768 1.05618 1.22781 0.86179 0.92486 1.03630 1.22034 0.97495 0.99787 0.97839 1.21657 0.98589 0.99701 0.95070 1.18955 0.90869 0.93089 0.94898 0.95181 1.21054 1.14532 1.28122 0.92159 0.92336 1.25064 0.97038 0.95835 0.96141 1.69878 1.25536 1.32969 1.23459 0.86641 0.79032 0.78584 0.83638 1.20281 1.21274 1.20252 1.22471 0.98100 0.97572 0.83015 1.88070 1.73503 1.23826 1.43264 0.91904 0.91303 0.91492 0.90897 0.90984 0.91461 0.91343 0.90477 0.90542 0.89639 0.90194 0.74782 0.92210 0.85650 0.92401 0.92186 0.93082 0.93195 0.92604 0.85831 0.93388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.36 8.65 37.16 0.32 -1.04 16 2 C 0.09 0.68 3.91 -26.68 -0.10 0.58 16 3 H 0.10 0.78 8.14 -51.92 -0.42 0.36 16 4 C -0.15 -0.95 5.64 -26.59 -0.15 -1.10 16 5 C -0.12 -0.72 5.72 -26.54 -0.15 -0.87 16 6 C -0.15 -0.98 5.42 -26.60 -0.14 -1.12 16 7 C 0.07 0.65 2.35 -26.69 -0.06 0.58 16 8 H 0.07 0.59 6.34 -51.93 -0.33 0.26 16 9 C 0.13 1.34 5.34 -4.04 -0.02 1.32 16 10 N -0.70 -9.64 5.50 -60.73 -0.33 -9.98 16 11 C 0.51 8.72 7.74 -11.58 -0.09 8.63 16 12 O -0.52 -9.12 13.18 5.50 0.07 -9.05 16 13 C 0.49 10.29 7.73 -11.59 -0.09 10.20 16 14 O -0.52 -12.25 15.93 5.49 0.09 -12.16 16 15 N -0.57 -12.20 2.97 -173.01 -0.51 -12.71 16 16 C 0.07 1.31 6.01 -3.49 -0.02 1.29 16 17 C -0.13 -2.40 6.10 -26.38 -0.16 -2.56 16 18 C -0.11 -2.35 5.10 -26.69 -0.14 -2.49 16 19 C 0.04 1.04 2.25 -91.65 -0.21 0.83 16 20 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 21 C -0.52 -14.22 8.56 -34.44 -0.29 -14.52 16 22 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 23 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 24 N -0.88 -25.65 11.39 55.43 0.63 -25.02 16 25 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 26 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 27 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 28 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 29 C 0.11 2.67 5.41 -3.71 -0.02 2.65 16 30 O -0.37 -3.83 10.18 -35.23 -0.36 -4.19 16 31 H 0.06 0.43 4.98 -51.93 -0.26 0.17 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.37 6.62 -51.93 -0.34 0.03 16 37 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.42 5.71 7.96 -40.82 -0.33 5.39 16 43 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.13 2.23 4.30 -54.83 -0.24 2.00 16 45 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 46 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 47 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 48 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 49 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 50 H 0.12 3.48 5.12 -51.93 -0.27 3.22 16 51 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 391.04 15.07 5.89 5.89 Total: -1.00 -31.34 391.04 -9.46 -40.79 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -8.49 Total: 6.11 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: -1.43 Total: 4.01 kcal Atomic # 7 Polarization: -47.49 SS G_CDS: -0.22 Total: -47.70 kcal Atomic # 8 Polarization: -25.20 SS G_CDS: -0.20 Total: -25.40 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.34 -9.46 -40.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347679801.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.834 kcal (2) G-P(sol) polarization free energy of solvation -31.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds