Wall clock time and date at job start Sat Apr 11 2020 05:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.46931 * 2 1 4 4 O 1.42904 * 109.46989 * 119.99870 * 2 1 3 5 5 C 1.53002 * 109.46849 * 239.99669 * 2 1 3 6 6 C 1.53041 * 109.45478 * 180.02562 * 5 2 1 7 7 C 1.53198 * 109.31157 * 181.37265 * 6 5 2 8 8 N 1.46926 * 108.77091 * 305.36563 * 7 6 5 9 9 C 1.34777 * 120.62697 * 233.58202 * 8 7 6 10 10 O 1.21349 * 120.00436 * 5.13488 * 9 8 7 11 11 C 1.49458 * 119.99939 * 185.13274 * 9 8 7 12 12 O 1.21349 * 119.99759 * 274.48127 * 11 9 8 13 13 N 1.34771 * 119.99828 * 94.75984 * 11 9 8 14 14 C 1.46934 * 120.63285 * 4.85488 * 13 11 9 15 15 C 1.53187 * 108.77521 * 126.36776 * 14 13 11 16 16 C 1.53043 * 109.31622 * 54.63852 * 15 14 13 17 17 C 1.53046 * 109.53096 * 298.63231 * 16 15 14 18 18 H 1.08996 * 109.49813 * 301.38019 * 17 16 15 19 19 C 1.50698 * 109.49186 * 181.31674 * 17 16 15 20 20 H 1.07998 * 120.00527 * 0.02562 * 19 17 16 21 21 C 1.37880 * 120.00030 * 179.97438 * 19 17 16 22 22 N 1.31523 * 119.99718 * 0.02562 * 21 19 17 23 23 Si 1.86799 * 120.00380 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47034 * 60.00053 * 23 21 19 25 25 H 1.48497 * 109.47144 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.46960 * 300.00542 * 23 21 19 27 27 C 1.46927 * 120.63118 * 184.57276 * 13 11 9 28 28 C 1.46920 * 118.74378 * 53.86081 * 8 7 6 29 29 C 1.53042 * 109.45102 * 300.05807 * 5 2 1 30 30 H 1.09001 * 109.46983 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46536 * 300.00266 * 1 2 3 32 32 H 1.08991 * 109.46836 * 60.00153 * 1 2 3 33 33 H 0.96696 * 113.99941 * 59.99667 * 4 2 1 34 34 H 1.08994 * 109.45980 * 60.03169 * 5 2 1 35 35 H 1.08993 * 109.50079 * 61.42401 * 6 5 2 36 36 H 1.09002 * 109.50089 * 301.32056 * 6 5 2 37 37 H 1.08995 * 109.58839 * 185.57760 * 7 6 5 38 38 H 1.08997 * 109.58534 * 65.14543 * 7 6 5 39 39 H 1.09007 * 109.58336 * 246.15678 * 14 13 11 40 40 H 1.08997 * 109.58320 * 6.43441 * 14 13 11 41 41 H 1.09008 * 109.49179 * 174.58618 * 15 14 13 42 42 H 1.09000 * 109.49860 * 294.67756 * 15 14 13 43 43 H 1.09003 * 109.46090 * 58.65017 * 16 15 14 44 44 H 1.08997 * 109.45670 * 178.62871 * 16 15 14 45 45 H 0.97001 * 119.99710 * 179.97438 * 22 21 19 46 46 H 1.08996 * 109.58525 * 353.41605 * 27 13 11 47 47 H 1.08996 * 109.59162 * 113.84369 * 27 13 11 48 48 H 1.09003 * 109.58564 * 65.92072 * 28 8 7 49 49 H 1.08999 * 109.59276 * 186.34672 * 28 8 7 50 50 H 1.09005 * 109.49618 * 298.58018 * 29 5 2 51 51 H 1.08999 * 109.49111 * 58.67130 * 29 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.0400 -0.7213 -1.2492 6 6 3.5704 -0.7217 -1.2486 7 6 4.0774 -1.4144 -2.5175 8 7 3.4736 -2.7513 -2.5997 9 6 4.2462 -3.8458 -2.7474 10 8 5.4550 -3.7434 -2.7202 11 6 3.6141 -5.1857 -2.9446 12 8 3.2723 -5.8426 -1.9832 13 7 3.4288 -5.6666 -4.1898 14 6 3.9377 -4.9353 -5.3582 15 6 4.8040 -5.8828 -6.1940 16 6 3.9957 -7.1354 -6.5398 17 6 3.5948 -7.8575 -5.2513 18 1 4.4902 -8.1230 -4.6894 19 6 2.8266 -9.1080 -5.5938 20 1 2.6428 -9.3629 -6.6270 21 6 2.3593 -9.9272 -4.5881 22 7 2.5836 -9.6171 -3.3298 23 14 1.4065 -11.4769 -5.0125 24 1 2.2581 -12.3713 -5.8371 25 1 1.0179 -12.1771 -3.7620 26 1 0.1856 -11.1137 -5.7759 27 6 2.7195 -6.9353 -4.4045 28 6 2.0113 -2.8720 -2.5242 29 6 1.5284 -2.1637 -1.2494 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.7210 -1.5952 1.2330 34 1 1.6770 -0.2071 -2.1391 35 1 3.9337 -1.2575 -0.3718 36 1 3.9345 0.3054 -1.2247 37 1 5.1627 -1.5056 -2.4753 38 1 3.7914 -0.8300 -3.3919 39 1 3.1009 -4.5793 -5.9593 40 1 4.5360 -4.0869 -5.0261 41 1 5.1091 -5.3815 -7.1127 42 1 5.6881 -6.1663 -5.6229 43 1 3.0991 -6.8488 -7.0894 44 1 4.6018 -7.8003 -7.1550 45 1 2.2545 -10.1933 -2.6222 46 1 2.5166 -7.4076 -3.4434 47 1 1.7815 -6.7459 -4.9262 48 1 1.5603 -2.4039 -3.3992 49 1 1.7329 -3.9252 -2.4864 50 1 1.9113 -2.6856 -0.3724 51 1 0.4386 -2.1631 -1.2259 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348684486.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:28:39 Heat of formation + Delta-G solvation = -131.622828 kcal Electronic energy + Delta-G solvation = -31348.192674 eV Core-core repulsion = 27246.834300 eV Total energy + Delta-G solvation = -4101.358374 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.83134 -39.43177 -38.26392 -36.77239 -36.48438 -33.45631 -33.18531 -31.89085 -31.55348 -30.27125 -29.89885 -26.78886 -25.27825 -25.03060 -23.80919 -23.12668 -21.92252 -21.55169 -20.40463 -19.37875 -18.37450 -17.64452 -17.02696 -16.40144 -16.22097 -16.13359 -15.74071 -15.04744 -14.86189 -14.73397 -14.54674 -14.35616 -14.12498 -13.85914 -13.76842 -13.36070 -13.19477 -12.81581 -12.67681 -12.66263 -12.56420 -12.24892 -12.21155 -12.13665 -11.97056 -11.55988 -11.25695 -11.05274 -11.04376 -10.96750 -10.92111 -10.60737 -10.56684 -10.43281 -10.28252 -10.13211 -9.97021 -9.28035 -9.17781 -8.91379 -8.82872 -8.48673 -7.94170 -6.03448 -4.12835 2.36056 2.47785 2.97050 3.29664 3.35877 3.36975 3.69053 4.02465 4.29562 4.33176 4.39822 4.45381 4.54846 4.78361 4.84443 4.95298 5.02673 5.04560 5.17923 5.23575 5.27019 5.32147 5.43725 5.44125 5.51604 5.52677 5.54898 5.61561 5.65426 5.70855 5.79682 5.89289 5.91735 6.10862 6.13630 6.26265 6.31448 6.52950 6.59678 6.77623 6.91422 6.98447 7.08855 7.11683 7.35297 7.54817 7.80011 7.88620 7.92521 8.03930 8.30034 8.48429 8.91159 9.53016 11.01778 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.016066 B = 0.002987 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.345296 B = 9370.804137 C =10367.560555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.107 3.893 3 H 0.097 0.903 4 O -0.562 6.562 5 C -0.120 4.120 6 C -0.125 4.125 7 C 0.109 3.891 8 N -0.601 5.601 9 C 0.519 3.481 10 O -0.519 6.519 11 C 0.506 3.494 12 O -0.510 6.510 13 N -0.586 5.586 14 C 0.108 3.892 15 C -0.133 4.133 16 C -0.110 4.110 17 C 0.038 3.962 18 H 0.031 0.969 19 C -0.521 4.521 20 H 0.059 0.941 21 C 0.063 3.937 22 N -0.880 5.880 23 Si 0.894 3.106 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.277 1.277 27 C 0.111 3.889 28 C 0.108 3.892 29 C -0.136 4.136 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.375 0.625 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.094 0.906 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.051 0.949 44 H 0.054 0.946 45 H 0.265 0.735 46 H 0.125 0.875 47 H 0.049 0.951 48 H 0.074 0.926 49 H 0.091 0.909 50 H 0.073 0.927 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.974 21.322 1.095 21.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.048 3.952 3 H 0.115 0.885 4 O -0.369 6.369 5 C -0.139 4.139 6 C -0.163 4.163 7 C -0.013 4.013 8 N -0.337 5.337 9 C 0.303 3.697 10 O -0.393 6.393 11 C 0.287 3.713 12 O -0.385 6.385 13 N -0.320 5.320 14 C -0.015 4.015 15 C -0.171 4.171 16 C -0.148 4.148 17 C 0.019 3.981 18 H 0.049 0.951 19 C -0.560 4.560 20 H 0.077 0.923 21 C -0.141 4.141 22 N -0.518 5.518 23 Si 0.722 3.278 24 H -0.203 1.203 25 H -0.212 1.212 26 H -0.202 1.202 27 C -0.009 4.009 28 C -0.015 4.015 29 C -0.174 4.174 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.223 0.777 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.113 0.887 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.069 0.931 44 H 0.073 0.927 45 H 0.075 0.925 46 H 0.143 0.857 47 H 0.068 0.932 48 H 0.093 0.907 49 H 0.109 0.891 50 H 0.091 0.909 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.267 21.502 1.929 21.834 hybrid contribution -0.823 -1.317 -0.408 1.605 sum -4.090 20.185 1.522 20.652 Atomic orbital electron populations 1.22571 0.96504 1.02920 1.02657 1.21912 0.92730 0.96279 0.84257 0.88496 1.86568 1.77236 1.29350 1.43732 1.21880 0.96318 0.96419 0.99291 1.21888 0.94754 1.01089 0.98550 1.21677 1.00030 0.81813 0.97753 1.48124 1.07262 1.06130 1.72160 1.20807 0.87407 0.85314 0.76184 1.90755 1.13565 1.85236 1.49787 1.19975 0.80033 0.86519 0.84770 1.90834 1.49720 1.58534 1.39449 1.48599 1.54625 1.24790 1.03998 1.21698 0.97641 0.94467 0.87737 1.21930 0.98990 0.97456 0.98737 1.21638 0.98283 0.94822 1.00075 1.18906 0.95903 0.92598 0.90667 0.95104 1.21023 1.35879 1.06179 0.92897 0.92288 1.25068 0.96011 0.97906 0.95067 1.69874 1.45163 1.37948 0.98786 0.86629 0.80302 0.83241 0.77665 1.20262 1.21240 1.20245 1.22376 0.93548 0.79482 1.05448 1.21857 0.79073 1.02593 0.97990 1.22118 1.01252 0.95317 0.98687 0.91777 0.91918 0.91551 0.77651 0.90026 0.90560 0.90641 0.88719 0.91196 0.91510 0.91440 0.91933 0.91797 0.93062 0.92747 0.92512 0.85719 0.93235 0.90735 0.89112 0.90852 0.89985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.11 9.18 37.16 0.34 -0.77 16 2 C 0.11 0.76 3.39 -26.73 -0.09 0.66 16 3 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 4 O -0.56 -5.15 12.65 -35.23 -0.45 -5.60 16 5 C -0.12 -0.86 2.04 -90.58 -0.18 -1.05 16 6 C -0.12 -1.08 5.19 -26.61 -0.14 -1.22 16 7 C 0.11 1.12 6.44 -3.71 -0.02 1.10 16 8 N -0.60 -7.81 2.97 -173.01 -0.51 -8.33 16 9 C 0.52 9.17 5.60 -11.58 -0.06 9.11 16 10 O -0.52 -10.42 16.32 5.50 0.09 -10.33 16 11 C 0.51 10.42 5.60 -11.58 -0.06 10.36 16 12 O -0.51 -12.38 16.32 5.50 0.09 -12.29 16 13 N -0.59 -11.67 2.98 -173.54 -0.52 -12.19 16 14 C 0.11 1.74 6.33 -3.71 -0.02 1.72 16 15 C -0.13 -2.22 6.08 -26.61 -0.16 -2.38 16 16 C -0.11 -2.16 5.11 -26.68 -0.14 -2.30 16 17 C 0.04 0.93 2.24 -91.87 -0.21 0.73 16 18 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 19 C -0.52 -13.80 8.56 -34.44 -0.29 -14.09 16 20 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 21 C 0.06 1.69 5.31 -17.81 -0.09 1.60 16 22 N -0.88 -25.22 11.39 55.43 0.63 -24.59 16 23 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 27 C 0.11 2.58 5.39 -3.93 -0.02 2.56 16 28 C 0.11 1.17 6.35 -3.49 -0.02 1.15 16 29 C -0.14 -1.15 4.71 -26.39 -0.12 -1.27 16 30 H 0.06 0.37 6.40 -51.93 -0.33 0.04 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.38 2.75 7.37 45.56 0.34 3.09 16 34 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.08 0.83 7.73 -51.93 -0.40 0.43 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.09 1.12 7.00 -51.93 -0.36 0.75 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.07 1.03 6.23 -51.93 -0.32 0.71 16 41 H 0.06 0.85 8.14 -51.92 -0.42 0.43 16 42 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 46 H 0.12 3.40 5.11 -51.93 -0.27 3.13 16 47 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 48 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 49 H 0.09 1.22 6.24 -51.93 -0.32 0.90 16 50 H 0.07 0.71 6.85 -51.93 -0.36 0.35 16 51 H 0.08 0.56 6.36 -51.93 -0.33 0.23 16 LS Contribution 390.30 15.07 5.88 5.88 Total: -1.00 -32.69 390.30 -8.93 -41.62 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -7.82 Total: 4.10 kcal Atomic # 6 Polarization: 7.21 SS G_CDS: -1.31 Total: 5.90 kcal Atomic # 7 Polarization: -44.71 SS G_CDS: -0.40 Total: -45.10 kcal Atomic # 8 Polarization: -27.95 SS G_CDS: -0.27 Total: -28.22 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.69 -8.93 -41.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348684486.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.004 kcal (2) G-P(sol) polarization free energy of solvation -32.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds