Wall clock time and date at job start Sat Apr 11 2020 05:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.46931 * 2 1 4 4 O 1.42904 * 109.46989 * 119.99870 * 2 1 3 5 5 C 1.53002 * 109.46849 * 239.99669 * 2 1 3 6 6 C 1.53041 * 109.45478 * 180.02562 * 5 2 1 7 7 C 1.53198 * 109.31157 * 181.37265 * 6 5 2 8 8 N 1.46926 * 108.77091 * 305.36563 * 7 6 5 9 9 C 1.34777 * 120.62697 * 233.58202 * 8 7 6 10 10 O 1.21349 * 120.00436 * 5.13488 * 9 8 7 11 11 C 1.49458 * 119.99939 * 185.13274 * 9 8 7 12 12 O 1.21349 * 119.99759 * 274.48127 * 11 9 8 13 13 N 1.34771 * 119.99828 * 94.75984 * 11 9 8 14 14 C 1.46934 * 120.63285 * 4.85488 * 13 11 9 15 15 C 1.53187 * 108.77521 * 126.36776 * 14 13 11 16 16 C 1.53043 * 109.31622 * 54.63852 * 15 14 13 17 17 C 1.53046 * 109.53096 * 298.63231 * 16 15 14 18 18 H 1.08996 * 109.49813 * 301.38019 * 17 16 15 19 19 C 1.50698 * 109.49186 * 181.31674 * 17 16 15 20 20 H 1.07998 * 120.00527 * 0.02562 * 19 17 16 21 21 C 1.37880 * 120.00030 * 179.97438 * 19 17 16 22 22 N 1.31523 * 119.99718 * 0.02562 * 21 19 17 23 23 Si 1.86799 * 120.00380 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47034 * 60.00053 * 23 21 19 25 25 H 1.48497 * 109.47144 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.46960 * 300.00542 * 23 21 19 27 27 C 1.46927 * 120.63118 * 184.57276 * 13 11 9 28 28 C 1.46920 * 118.74378 * 53.86081 * 8 7 6 29 29 C 1.53042 * 109.45102 * 300.05807 * 5 2 1 30 30 H 1.09001 * 109.46983 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46536 * 300.00266 * 1 2 3 32 32 H 1.08991 * 109.46836 * 60.00153 * 1 2 3 33 33 H 0.96696 * 113.99941 * 59.99667 * 4 2 1 34 34 H 1.08994 * 109.45980 * 60.03169 * 5 2 1 35 35 H 1.08993 * 109.50079 * 61.42401 * 6 5 2 36 36 H 1.09002 * 109.50089 * 301.32056 * 6 5 2 37 37 H 1.08995 * 109.58839 * 185.57760 * 7 6 5 38 38 H 1.08997 * 109.58534 * 65.14543 * 7 6 5 39 39 H 1.09007 * 109.58336 * 246.15678 * 14 13 11 40 40 H 1.08997 * 109.58320 * 6.43441 * 14 13 11 41 41 H 1.09008 * 109.49179 * 174.58618 * 15 14 13 42 42 H 1.09000 * 109.49860 * 294.67756 * 15 14 13 43 43 H 1.09003 * 109.46090 * 58.65017 * 16 15 14 44 44 H 1.08997 * 109.45670 * 178.62871 * 16 15 14 45 45 H 0.97001 * 119.99710 * 179.97438 * 22 21 19 46 46 H 1.08996 * 109.58525 * 353.41605 * 27 13 11 47 47 H 1.08996 * 109.59162 * 113.84369 * 27 13 11 48 48 H 1.09003 * 109.58564 * 65.92072 * 28 8 7 49 49 H 1.08999 * 109.59276 * 186.34672 * 28 8 7 50 50 H 1.09005 * 109.49618 * 298.58018 * 29 5 2 51 51 H 1.08999 * 109.49111 * 58.67130 * 29 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.0400 -0.7213 -1.2492 6 6 3.5704 -0.7217 -1.2486 7 6 4.0774 -1.4144 -2.5175 8 7 3.4736 -2.7513 -2.5997 9 6 4.2462 -3.8458 -2.7474 10 8 5.4550 -3.7434 -2.7202 11 6 3.6141 -5.1857 -2.9446 12 8 3.2723 -5.8426 -1.9832 13 7 3.4288 -5.6666 -4.1898 14 6 3.9377 -4.9353 -5.3582 15 6 4.8040 -5.8828 -6.1940 16 6 3.9957 -7.1354 -6.5398 17 6 3.5948 -7.8575 -5.2513 18 1 4.4902 -8.1230 -4.6894 19 6 2.8266 -9.1080 -5.5938 20 1 2.6428 -9.3629 -6.6270 21 6 2.3593 -9.9272 -4.5881 22 7 2.5836 -9.6171 -3.3298 23 14 1.4065 -11.4769 -5.0125 24 1 2.2581 -12.3713 -5.8371 25 1 1.0179 -12.1771 -3.7620 26 1 0.1856 -11.1137 -5.7759 27 6 2.7195 -6.9353 -4.4045 28 6 2.0113 -2.8720 -2.5242 29 6 1.5284 -2.1637 -1.2494 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.7210 -1.5952 1.2330 34 1 1.6770 -0.2071 -2.1391 35 1 3.9337 -1.2575 -0.3718 36 1 3.9345 0.3054 -1.2247 37 1 5.1627 -1.5056 -2.4753 38 1 3.7914 -0.8300 -3.3919 39 1 3.1009 -4.5793 -5.9593 40 1 4.5360 -4.0869 -5.0261 41 1 5.1091 -5.3815 -7.1127 42 1 5.6881 -6.1663 -5.6229 43 1 3.0991 -6.8488 -7.0894 44 1 4.6018 -7.8003 -7.1550 45 1 2.2545 -10.1933 -2.6222 46 1 2.5166 -7.4076 -3.4434 47 1 1.7815 -6.7459 -4.9262 48 1 1.5603 -2.4039 -3.3992 49 1 1.7329 -3.9252 -2.4864 50 1 1.9113 -2.6856 -0.3724 51 1 0.4386 -2.1631 -1.2259 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348684486.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:28:38 Heat of formation + Delta-G solvation = -154.885811 kcal Electronic energy + Delta-G solvation = -31349.201433 eV Core-core repulsion = 27246.834300 eV Total energy + Delta-G solvation = -4102.367133 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.15380 -40.52654 -39.49101 -38.45413 -37.44306 -35.34986 -34.06152 -33.56075 -32.36362 -31.67715 -30.92327 -28.10842 -26.98583 -26.32748 -24.63107 -24.34058 -23.54696 -22.53089 -21.43073 -20.71966 -19.66480 -19.08733 -18.27139 -18.07277 -17.60879 -17.29896 -16.60176 -16.41408 -16.06685 -15.94270 -15.77783 -15.39642 -15.30667 -15.19774 -14.92966 -14.66307 -14.54609 -14.38852 -14.09815 -13.92476 -13.61404 -13.38220 -13.27401 -12.92668 -12.85226 -12.78821 -12.72981 -12.55784 -12.32246 -12.27639 -12.23513 -11.89408 -11.87993 -11.69513 -11.64336 -11.25930 -11.12016 -10.98571 -10.78115 -10.58832 -10.50970 -9.89230 -9.63373 -8.10782 -6.28541 0.95153 1.09540 1.41782 1.43189 1.47223 1.52876 2.33685 2.43669 3.08870 3.18017 3.45151 3.63024 3.72107 3.83777 3.90394 4.00072 4.06467 4.19072 4.24281 4.28196 4.35632 4.46149 4.50082 4.50406 4.64570 4.65989 4.71010 4.75844 4.76757 4.80660 4.83765 4.95082 5.01954 5.03366 5.07694 5.15706 5.18105 5.21367 5.27887 5.33535 5.41567 5.41923 5.46438 5.57944 5.85809 5.91712 5.95532 6.27183 6.32245 6.62076 6.78742 6.80310 6.88185 7.42054 8.92633 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.016066 B = 0.002987 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.345296 B = 9370.804137 C =10367.560555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.106 3.894 3 H 0.105 0.895 4 O -0.584 6.584 5 C -0.110 4.110 6 C -0.120 4.120 7 C 0.106 3.894 8 N -0.584 5.584 9 C 0.524 3.476 10 O -0.552 6.552 11 C 0.500 3.500 12 O -0.562 6.562 13 N -0.585 5.585 14 C 0.105 3.895 15 C -0.127 4.127 16 C -0.103 4.103 17 C 0.034 3.966 18 H -0.021 1.021 19 C -0.533 4.533 20 H 0.066 0.934 21 C 0.010 3.990 22 N -0.917 5.917 23 Si 0.960 3.040 24 H -0.271 1.271 25 H -0.291 1.291 26 H -0.263 1.263 27 C 0.125 3.875 28 C 0.101 3.899 29 C -0.131 4.131 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.082 0.918 33 H 0.379 0.621 34 H 0.109 0.891 35 H 0.046 0.954 36 H 0.098 0.902 37 H 0.077 0.923 38 H 0.108 0.892 39 H 0.103 0.897 40 H 0.081 0.919 41 H 0.108 0.892 42 H 0.039 0.961 43 H 0.069 0.931 44 H 0.054 0.946 45 H 0.260 0.740 46 H 0.080 0.920 47 H 0.059 0.941 48 H 0.111 0.889 49 H 0.059 0.941 50 H 0.052 0.948 51 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.505 24.279 -1.424 24.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.048 3.952 3 H 0.123 0.877 4 O -0.392 6.392 5 C -0.129 4.129 6 C -0.158 4.158 7 C -0.015 4.015 8 N -0.317 5.317 9 C 0.307 3.693 10 O -0.430 6.430 11 C 0.282 3.718 12 O -0.441 6.441 13 N -0.318 5.318 14 C -0.017 4.017 15 C -0.165 4.165 16 C -0.141 4.141 17 C 0.015 3.985 18 H -0.002 1.002 19 C -0.572 4.572 20 H 0.085 0.915 21 C -0.190 4.190 22 N -0.555 5.555 23 Si 0.785 3.215 24 H -0.197 1.197 25 H -0.217 1.217 26 H -0.187 1.187 27 C 0.004 3.996 28 C -0.021 4.021 29 C -0.169 4.169 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.101 0.899 33 H 0.228 0.772 34 H 0.128 0.872 35 H 0.065 0.935 36 H 0.117 0.883 37 H 0.095 0.905 38 H 0.126 0.874 39 H 0.121 0.879 40 H 0.099 0.901 41 H 0.127 0.873 42 H 0.058 0.942 43 H 0.088 0.912 44 H 0.073 0.927 45 H 0.069 0.931 46 H 0.098 0.902 47 H 0.077 0.923 48 H 0.129 0.871 49 H 0.077 0.923 50 H 0.071 0.929 51 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -4.821 24.520 -0.632 24.998 hybrid contribution -0.345 -2.197 0.389 2.258 sum -5.166 22.323 -0.243 22.915 Atomic orbital electron populations 1.22531 0.95415 1.03059 1.03251 1.22033 0.93572 0.96298 0.83346 0.87743 1.86545 1.77790 1.29893 1.44979 1.21848 0.94969 0.95463 1.00596 1.21861 0.95961 1.01636 0.96367 1.21987 0.99089 0.80235 1.00163 1.48220 1.08069 1.05943 1.69508 1.20160 0.87024 0.85074 0.77053 1.90741 1.14587 1.85457 1.52218 1.20626 0.79235 0.87663 0.84253 1.90794 1.51956 1.60262 1.41066 1.48607 1.54023 1.23874 1.05298 1.22018 0.99005 0.94193 0.86450 1.21907 0.97598 0.96538 1.00478 1.21520 0.99494 0.95704 0.97350 1.18869 0.93727 0.93177 0.92711 1.00250 1.21449 1.35481 1.07100 0.93154 0.91537 1.25918 0.97078 1.01153 0.94824 1.70087 1.46550 1.39045 0.99830 0.85582 0.79320 0.79336 0.77262 1.19655 1.21663 1.18727 1.21838 0.94048 0.80831 1.02925 1.22115 0.77619 1.01522 1.00819 1.22107 1.02516 0.95828 0.96471 0.91847 0.92410 0.89898 0.77163 0.87248 0.93463 0.88319 0.90466 0.87420 0.87889 0.90073 0.87334 0.94178 0.91196 0.92747 0.93090 0.90161 0.92269 0.87114 0.92278 0.92931 0.87789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.66 9.18 71.98 0.66 -1.00 16 2 C 0.11 1.23 3.39 30.60 0.10 1.33 16 3 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 4 O -0.58 -10.25 12.65 -148.98 -1.88 -12.13 16 5 C -0.11 -1.23 2.04 -10.77 -0.02 -1.25 16 6 C -0.12 -1.80 5.19 30.67 0.16 -1.64 16 7 C 0.11 1.90 6.44 86.36 0.56 2.46 16 8 N -0.58 -14.47 2.97 -819.65 -2.43 -16.90 16 9 C 0.52 18.77 5.60 87.27 0.49 19.25 16 10 O -0.55 -22.65 16.32 -3.24 -0.05 -22.70 16 11 C 0.50 21.49 5.60 87.27 0.49 21.98 16 12 O -0.56 -29.37 16.32 -3.24 -0.05 -29.43 16 13 N -0.59 -23.71 2.98 -821.31 -2.45 -26.15 16 14 C 0.10 3.16 6.33 86.36 0.55 3.71 16 15 C -0.13 -3.99 6.08 30.67 0.19 -3.81 16 16 C -0.10 -3.91 5.11 30.62 0.16 -3.76 16 17 C 0.03 1.72 2.24 -11.60 -0.03 1.70 16 18 H -0.02 -1.23 8.14 -2.39 -0.02 -1.25 16 19 C -0.53 -28.74 8.56 25.60 0.22 -28.52 16 20 H 0.07 3.40 7.74 -2.91 -0.02 3.38 16 21 C 0.01 0.54 5.31 84.65 0.45 0.99 16 22 N -0.92 -55.29 11.39 21.45 0.24 -55.05 16 23 Si 0.96 43.43 29.54 68.60 2.03 45.45 16 24 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 25 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 26 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 27 C 0.12 6.02 5.39 86.22 0.46 6.48 16 28 C 0.10 2.02 6.35 86.51 0.55 2.56 16 29 C -0.13 -1.98 4.71 30.82 0.15 -1.84 16 30 H 0.06 0.58 6.40 -2.39 -0.02 0.56 16 31 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.38 5.60 7.37 -74.06 -0.55 5.05 16 34 H 0.11 0.72 8.14 -2.39 -0.02 0.71 16 35 H 0.05 1.00 7.73 -2.39 -0.02 0.98 16 36 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.08 1.72 7.00 -2.39 -0.02 1.71 16 38 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.10 2.42 8.14 -2.38 -0.02 2.40 16 40 H 0.08 2.28 6.23 -2.39 -0.01 2.27 16 41 H 0.11 2.48 8.14 -2.38 -0.02 2.46 16 42 H 0.04 1.44 8.14 -2.39 -0.02 1.43 16 43 H 0.07 2.40 8.14 -2.39 -0.02 2.39 16 44 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 45 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 46 H 0.08 4.67 5.11 -2.39 -0.01 4.66 16 47 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16 48 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 49 H 0.06 1.61 6.24 -2.39 -0.01 1.59 16 50 H 0.05 1.03 6.85 -2.38 -0.02 1.01 16 51 H 0.10 1.15 6.36 -2.39 -0.02 1.13 16 Total: -1.00 -78.05 390.30 0.92 -77.14 By element: Atomic # 1 Polarization: 20.73 SS G_CDS: 0.39 Total: 21.12 kcal Atomic # 6 Polarization: 13.52 SS G_CDS: 5.13 Total: 18.65 kcal Atomic # 7 Polarization: -93.47 SS G_CDS: -4.63 Total: -98.10 kcal Atomic # 8 Polarization: -62.27 SS G_CDS: -1.99 Total: -64.26 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.45 kcal Total: -78.05 0.92 -77.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348684486.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.747 kcal (2) G-P(sol) polarization free energy of solvation -78.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds