Wall clock time and date at job start Sat Apr 11 2020 05:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47238 * 2 1 4 4 O 1.42904 * 109.47194 * 120.00271 * 2 1 3 5 5 C 1.53000 * 109.47176 * 239.99595 * 2 1 3 6 6 C 1.53042 * 109.46273 * 180.02562 * 5 2 1 7 7 C 1.53187 * 109.31479 * 181.38827 * 6 5 2 8 8 N 1.46931 * 108.77494 * 305.36291 * 7 6 5 9 9 C 1.34779 * 120.62819 * 233.58862 * 8 7 6 10 10 O 1.21342 * 120.00384 * 7.09143 * 9 8 7 11 11 C 1.49449 * 119.99415 * 187.09585 * 9 8 7 12 12 O 1.21353 * 120.00498 * 7.51990 * 11 9 8 13 13 N 1.34776 * 119.99808 * 187.52629 * 11 9 8 14 14 C 1.46930 * 120.63053 * 175.55974 * 13 11 9 15 15 C 1.53192 * 108.88996 * 233.51525 * 14 13 11 16 16 C 1.53078 * 109.29658 * 305.57493 * 15 14 13 17 17 C 1.50700 * 109.45073 * 181.24562 * 16 15 14 18 18 H 1.08003 * 119.99650 * 239.78816 * 17 16 15 19 19 C 1.37871 * 119.99801 * 59.79583 * 17 16 15 20 20 N 1.31510 * 120.00519 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99666 * 179.97438 * 19 17 16 22 22 H 1.48510 * 109.47105 * 359.97438 * 21 19 17 23 23 H 1.48506 * 109.47052 * 119.99737 * 21 19 17 24 24 H 1.48499 * 109.47431 * 239.99590 * 21 19 17 25 25 C 1.53043 * 109.65626 * 61.15617 * 16 15 14 26 26 C 1.46929 * 120.63295 * 355.53532 * 13 11 9 27 27 C 1.46918 * 118.73555 * 53.86413 * 8 7 6 28 28 C 1.53039 * 109.46220 * 300.06860 * 5 2 1 29 29 H 1.08997 * 109.47334 * 300.00564 * 1 2 3 30 30 H 1.09001 * 109.46734 * 60.00255 * 1 2 3 31 31 H 1.08996 * 109.47238 * 180.02562 * 1 2 3 32 32 H 0.96711 * 113.99240 * 299.99852 * 4 2 1 33 33 H 1.09002 * 109.46082 * 60.02764 * 5 2 1 34 34 H 1.09005 * 109.49712 * 61.43188 * 6 5 2 35 35 H 1.09002 * 109.49593 * 301.34327 * 6 5 2 36 36 H 1.09009 * 109.58735 * 185.57801 * 7 6 5 37 37 H 1.08992 * 109.70564 * 65.22483 * 7 6 5 38 38 H 1.08993 * 109.58873 * 353.37186 * 14 13 11 39 39 H 1.08998 * 109.58698 * 113.65576 * 14 13 11 40 40 H 1.08994 * 109.50254 * 65.38799 * 15 14 13 41 41 H 1.09004 * 109.49202 * 185.48539 * 15 14 13 42 42 H 1.09005 * 109.34771 * 301.13143 * 16 15 14 43 43 H 0.97002 * 119.99933 * 180.02562 * 20 19 17 44 44 H 1.08993 * 109.49644 * 178.74560 * 25 16 15 45 45 H 1.09006 * 109.52007 * 58.66551 * 25 16 15 46 46 H 1.08993 * 109.58688 * 246.20738 * 26 13 11 47 47 H 1.08999 * 109.58174 * 6.48517 * 26 13 11 48 48 H 1.09000 * 109.59016 * 65.92400 * 27 8 7 49 49 H 1.09002 * 109.58617 * 186.35344 * 27 8 7 50 50 H 1.08993 * 109.49996 * 298.56584 * 28 5 2 51 51 H 1.09000 * 109.49932 * 58.63370 * 28 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 2.0400 -0.7213 -1.2492 6 6 3.5704 -0.7218 -1.2487 7 6 4.0773 -1.4141 -2.5176 8 7 3.4736 -2.7511 -2.6003 9 6 4.2463 -3.8455 -2.7481 10 8 5.4542 -3.7484 -2.6853 11 6 3.6152 -5.1785 -2.9895 12 8 2.4207 -5.2574 -3.1883 13 7 4.3728 -6.2932 -2.9863 14 6 3.7546 -7.6189 -3.1252 15 6 4.2148 -8.5049 -1.9633 16 6 5.7448 -8.5233 -1.9163 17 6 6.2016 -9.4185 -0.7934 18 1 6.8059 -9.0160 0.0062 19 6 5.8483 -10.7511 -0.7869 20 7 5.1122 -11.2411 -1.7603 21 14 6.4153 -11.8608 0.6048 22 1 7.2256 -11.0725 1.5677 23 1 5.2314 -12.4268 1.3002 24 1 7.2399 -12.9655 0.0525 25 6 6.2698 -7.1048 -1.6835 26 6 5.8326 -6.2058 -2.8443 27 6 2.0113 -2.8717 -2.5248 28 6 1.5284 -2.1637 -1.2497 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.7209 -0.2701 1.9980 33 1 1.6770 -0.2071 -2.1391 34 1 3.9338 -1.2578 -0.3718 35 1 3.9345 0.3054 -1.2244 36 1 5.1628 -1.5053 -2.4754 37 1 3.7936 -0.8303 -3.3932 38 1 2.6694 -7.5203 -3.1019 39 1 4.0605 -8.0675 -4.0703 40 1 3.8288 -8.1050 -1.0257 41 1 3.8408 -9.5184 -2.1085 42 1 6.1306 -8.9026 -2.8627 43 1 4.8634 -12.1786 -1.7555 44 1 7.3582 -7.1242 -1.6283 45 1 5.8650 -6.7154 -0.7493 46 1 6.3099 -6.5402 -3.7653 47 1 6.1185 -5.1744 -2.6382 48 1 1.5603 -2.4034 -3.3997 49 1 1.7330 -3.9249 -2.4872 50 1 1.9112 -2.6859 -0.3730 51 1 0.4386 -2.1631 -1.2258 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001351856348.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:28:45 Heat of formation + Delta-G solvation = -99.340407 kcal Electronic energy + Delta-G solvation = -31036.866234 eV Core-core repulsion = 26936.907730 eV Total energy + Delta-G solvation = -4099.958503 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.00323 -39.33940 -38.24150 -37.27855 -36.41375 -33.70208 -33.15214 -31.45287 -31.06241 -30.21654 -30.07532 -26.97490 -25.96778 -24.21717 -23.58188 -22.61816 -22.31319 -21.25357 -20.45914 -19.56435 -18.62576 -17.46392 -17.01879 -16.69541 -16.46251 -15.85303 -15.65086 -15.11549 -14.92232 -14.63553 -14.52698 -14.48836 -14.16320 -13.79881 -13.63404 -13.26755 -13.20625 -12.85995 -12.75098 -12.70857 -12.60376 -12.27630 -12.17071 -11.93358 -11.80746 -11.39180 -11.16178 -11.08685 -11.05526 -10.93364 -10.69655 -10.58329 -10.46184 -10.24676 -10.07436 -10.04223 -9.53825 -9.22019 -8.93496 -8.82686 -8.43354 -8.31825 -8.06189 -5.99320 -4.05454 1.61285 2.47690 3.29826 3.38109 3.40567 3.42479 3.63789 3.94131 4.33204 4.36340 4.44147 4.48972 4.63692 4.80521 4.94538 5.03053 5.06998 5.19175 5.30114 5.30528 5.40929 5.44349 5.54108 5.64288 5.68003 5.70110 5.73785 5.87689 5.93425 5.97044 6.03185 6.08401 6.19444 6.22005 6.29323 6.36827 6.42549 6.64210 6.75315 6.86638 7.03719 7.11474 7.18761 7.34607 7.36283 7.69717 7.76790 7.92141 7.96831 8.09651 8.27005 8.44583 8.98367 9.59533 11.06124 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.016654 B = 0.002645 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.910695 B =10582.946180 C =11054.558922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.106 3.894 3 H 0.052 0.948 4 O -0.561 6.561 5 C -0.082 4.082 6 C -0.124 4.124 7 C 0.106 3.894 8 N -0.581 5.581 9 C 0.513 3.487 10 O -0.511 6.511 11 C 0.500 3.500 12 O -0.534 6.534 13 N -0.555 5.555 14 C 0.103 3.897 15 C -0.121 4.121 16 C 0.045 3.955 17 C -0.510 4.510 18 H 0.055 0.945 19 C 0.060 3.940 20 N -0.892 5.892 21 Si 0.890 3.110 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.285 1.285 25 C -0.120 4.120 26 C 0.043 3.957 27 C 0.064 3.936 28 C -0.127 4.127 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.375 0.625 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.095 0.905 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.065 0.935 40 H 0.038 0.962 41 H 0.106 0.894 42 H 0.027 0.973 43 H 0.260 0.740 44 H 0.061 0.939 45 H 0.049 0.951 46 H 0.060 0.940 47 H 0.147 0.853 48 H 0.065 0.935 49 H 0.148 0.852 50 H 0.075 0.925 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.522 23.945 -0.528 25.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.047 3.953 3 H 0.070 0.930 4 O -0.366 6.366 5 C -0.101 4.101 6 C -0.163 4.163 7 C -0.016 4.016 8 N -0.314 5.314 9 C 0.298 3.702 10 O -0.389 6.389 11 C 0.283 3.717 12 O -0.415 6.415 13 N -0.285 5.285 14 C -0.018 4.018 15 C -0.160 4.160 16 C 0.026 3.974 17 C -0.548 4.548 18 H 0.074 0.926 19 C -0.141 4.141 20 N -0.531 5.531 21 Si 0.718 3.282 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.211 1.211 25 C -0.158 4.158 26 C -0.077 4.077 27 C -0.057 4.057 28 C -0.165 4.165 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.221 0.779 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.113 0.887 37 H 0.087 0.913 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.057 0.943 41 H 0.124 0.876 42 H 0.045 0.955 43 H 0.070 0.930 44 H 0.080 0.920 45 H 0.068 0.932 46 H 0.078 0.922 47 H 0.163 0.837 48 H 0.083 0.917 49 H 0.165 0.835 50 H 0.094 0.906 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.280 23.363 -1.118 24.812 hybrid contribution -0.086 -0.265 1.149 1.182 sum -8.366 23.098 0.031 24.566 Atomic orbital electron populations 1.22582 0.96609 1.03249 1.02242 1.21796 0.92598 0.94713 0.86228 0.92981 1.86590 1.76850 1.57482 1.15705 1.21256 0.95896 0.96889 0.96018 1.21883 0.95031 1.00790 0.98546 1.21728 1.00034 0.82046 0.97789 1.47980 1.08108 1.05605 1.69695 1.20398 0.86729 0.85840 0.77246 1.90288 1.13967 1.83874 1.50768 1.19849 0.86707 0.85433 0.79728 1.90387 1.14559 1.85457 1.51126 1.48275 1.09008 1.05711 1.65524 1.22106 0.98005 0.80709 1.00981 1.22033 0.99952 1.00090 0.93896 1.18698 0.91323 0.89928 0.97428 1.21248 1.31887 0.93662 1.07990 0.92639 1.24972 0.95127 0.98078 0.95893 1.69846 1.37373 1.13968 1.31926 0.86564 0.78484 0.80679 0.82433 1.19828 1.21079 1.21080 1.21952 1.00113 0.97541 0.96180 1.23437 0.77459 1.07062 0.99779 1.23104 0.77847 1.07700 0.97084 1.22065 1.00772 0.94775 0.98874 0.92556 0.91647 0.91168 0.77866 0.90107 0.90319 0.90969 0.88666 0.91283 0.90375 0.91628 0.94281 0.87553 0.95499 0.93048 0.92043 0.93170 0.92191 0.83706 0.91703 0.83541 0.90589 0.90653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.11 9.18 37.16 0.34 -0.77 16 2 C 0.11 0.74 3.31 -26.73 -0.09 0.65 16 3 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 4 O -0.56 -4.77 12.03 -35.23 -0.42 -5.19 16 5 C -0.08 -0.67 2.04 -90.58 -0.18 -0.86 16 6 C -0.12 -1.14 5.19 -26.61 -0.14 -1.27 16 7 C 0.11 1.10 6.44 -3.71 -0.02 1.08 16 8 N -0.58 -7.61 2.97 -173.01 -0.51 -8.12 16 9 C 0.51 8.30 7.67 -11.58 -0.09 8.21 16 10 O -0.51 -8.85 12.45 5.50 0.07 -8.79 16 11 C 0.50 8.97 7.62 -11.59 -0.09 8.88 16 12 O -0.53 -9.78 12.58 5.49 0.07 -9.71 16 13 N -0.56 -10.61 2.97 -173.28 -0.52 -11.12 16 14 C 0.10 2.07 6.41 -3.71 -0.02 2.04 16 15 C -0.12 -2.84 5.16 -26.59 -0.14 -2.97 16 16 C 0.04 1.10 2.06 -91.71 -0.19 0.91 16 17 C -0.51 -13.91 8.56 -34.44 -0.29 -14.20 16 18 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 19 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 20 N -0.89 -25.05 11.30 55.43 0.63 -24.43 16 21 Si 0.89 21.27 29.54 -169.99 -5.02 16.24 16 22 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 25 C -0.12 -2.54 5.30 -26.61 -0.14 -2.68 16 26 C 0.04 0.81 6.27 -3.71 -0.02 0.79 16 27 C 0.06 0.75 6.05 -3.49 -0.02 0.73 16 28 C -0.13 -1.28 4.89 -26.38 -0.13 -1.41 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.48 6.40 -51.93 -0.33 0.15 16 32 H 0.37 1.72 9.08 45.56 0.41 2.13 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.08 0.91 7.73 -51.93 -0.40 0.51 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.09 1.08 7.00 -51.92 -0.36 0.72 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.08 1.52 7.03 -51.93 -0.37 1.15 16 39 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.11 2.74 6.03 -51.93 -0.31 2.43 16 42 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 44 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 45 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 46 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 47 H 0.15 2.68 3.72 -57.12 -0.21 2.47 16 48 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 49 H 0.15 2.11 4.22 -55.22 -0.23 1.88 16 50 H 0.08 0.95 7.73 -51.93 -0.40 0.55 16 51 H 0.08 0.66 6.36 -51.93 -0.33 0.33 16 LS Contribution 383.81 15.07 5.78 5.78 Total: -1.00 -30.44 383.81 -8.83 -39.26 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -7.58 Total: 5.38 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: -1.33 Total: 0.68 kcal Atomic # 7 Polarization: -43.27 SS G_CDS: -0.40 Total: -43.67 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: -0.29 Total: -23.69 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -30.44 -8.83 -39.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351856348.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.076 kcal (2) G-P(sol) polarization free energy of solvation -30.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds