Wall clock time and date at job start Sat Apr 11 2020 05:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47238 * 2 1 4 4 O 1.42904 * 109.47194 * 120.00271 * 2 1 3 5 5 C 1.53000 * 109.47176 * 239.99595 * 2 1 3 6 6 C 1.53042 * 109.46273 * 180.02562 * 5 2 1 7 7 C 1.53187 * 109.31479 * 181.38827 * 6 5 2 8 8 N 1.46931 * 108.77494 * 305.36291 * 7 6 5 9 9 C 1.34779 * 120.62819 * 233.58862 * 8 7 6 10 10 O 1.21342 * 120.00384 * 7.09143 * 9 8 7 11 11 C 1.49449 * 119.99415 * 187.09585 * 9 8 7 12 12 O 1.21353 * 120.00498 * 7.51990 * 11 9 8 13 13 N 1.34776 * 119.99808 * 187.52629 * 11 9 8 14 14 C 1.46930 * 120.63053 * 175.55974 * 13 11 9 15 15 C 1.53192 * 108.88996 * 233.51525 * 14 13 11 16 16 C 1.53078 * 109.29658 * 305.57493 * 15 14 13 17 17 C 1.50700 * 109.45073 * 181.24562 * 16 15 14 18 18 H 1.08003 * 119.99650 * 239.78816 * 17 16 15 19 19 C 1.37871 * 119.99801 * 59.79583 * 17 16 15 20 20 N 1.31510 * 120.00519 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99666 * 179.97438 * 19 17 16 22 22 H 1.48510 * 109.47105 * 359.97438 * 21 19 17 23 23 H 1.48506 * 109.47052 * 119.99737 * 21 19 17 24 24 H 1.48499 * 109.47431 * 239.99590 * 21 19 17 25 25 C 1.53043 * 109.65626 * 61.15617 * 16 15 14 26 26 C 1.46929 * 120.63295 * 355.53532 * 13 11 9 27 27 C 1.46918 * 118.73555 * 53.86413 * 8 7 6 28 28 C 1.53039 * 109.46220 * 300.06860 * 5 2 1 29 29 H 1.08997 * 109.47334 * 300.00564 * 1 2 3 30 30 H 1.09001 * 109.46734 * 60.00255 * 1 2 3 31 31 H 1.08996 * 109.47238 * 180.02562 * 1 2 3 32 32 H 0.96711 * 113.99240 * 299.99852 * 4 2 1 33 33 H 1.09002 * 109.46082 * 60.02764 * 5 2 1 34 34 H 1.09005 * 109.49712 * 61.43188 * 6 5 2 35 35 H 1.09002 * 109.49593 * 301.34327 * 6 5 2 36 36 H 1.09009 * 109.58735 * 185.57801 * 7 6 5 37 37 H 1.08992 * 109.70564 * 65.22483 * 7 6 5 38 38 H 1.08993 * 109.58873 * 353.37186 * 14 13 11 39 39 H 1.08998 * 109.58698 * 113.65576 * 14 13 11 40 40 H 1.08994 * 109.50254 * 65.38799 * 15 14 13 41 41 H 1.09004 * 109.49202 * 185.48539 * 15 14 13 42 42 H 1.09005 * 109.34771 * 301.13143 * 16 15 14 43 43 H 0.97002 * 119.99933 * 180.02562 * 20 19 17 44 44 H 1.08993 * 109.49644 * 178.74560 * 25 16 15 45 45 H 1.09006 * 109.52007 * 58.66551 * 25 16 15 46 46 H 1.08993 * 109.58688 * 246.20738 * 26 13 11 47 47 H 1.08999 * 109.58174 * 6.48517 * 26 13 11 48 48 H 1.09000 * 109.59016 * 65.92400 * 27 8 7 49 49 H 1.09002 * 109.58617 * 186.35344 * 27 8 7 50 50 H 1.08993 * 109.49996 * 298.56584 * 28 5 2 51 51 H 1.09000 * 109.49932 * 58.63370 * 28 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 2.0400 -0.7213 -1.2492 6 6 3.5704 -0.7218 -1.2487 7 6 4.0773 -1.4141 -2.5176 8 7 3.4736 -2.7511 -2.6003 9 6 4.2463 -3.8455 -2.7481 10 8 5.4542 -3.7484 -2.6853 11 6 3.6152 -5.1785 -2.9895 12 8 2.4207 -5.2574 -3.1883 13 7 4.3728 -6.2932 -2.9863 14 6 3.7546 -7.6189 -3.1252 15 6 4.2148 -8.5049 -1.9633 16 6 5.7448 -8.5233 -1.9163 17 6 6.2016 -9.4185 -0.7934 18 1 6.8059 -9.0160 0.0062 19 6 5.8483 -10.7511 -0.7869 20 7 5.1122 -11.2411 -1.7603 21 14 6.4153 -11.8608 0.6048 22 1 7.2256 -11.0725 1.5677 23 1 5.2314 -12.4268 1.3002 24 1 7.2399 -12.9655 0.0525 25 6 6.2698 -7.1048 -1.6835 26 6 5.8326 -6.2058 -2.8443 27 6 2.0113 -2.8717 -2.5248 28 6 1.5284 -2.1637 -1.2497 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.7209 -0.2701 1.9980 33 1 1.6770 -0.2071 -2.1391 34 1 3.9338 -1.2578 -0.3718 35 1 3.9345 0.3054 -1.2244 36 1 5.1628 -1.5053 -2.4754 37 1 3.7936 -0.8303 -3.3932 38 1 2.6694 -7.5203 -3.1019 39 1 4.0605 -8.0675 -4.0703 40 1 3.8288 -8.1050 -1.0257 41 1 3.8408 -9.5184 -2.1085 42 1 6.1306 -8.9026 -2.8627 43 1 4.8634 -12.1786 -1.7555 44 1 7.3582 -7.1242 -1.6283 45 1 5.8650 -6.7154 -0.7493 46 1 6.3099 -6.5402 -3.7653 47 1 6.1185 -5.1744 -2.6382 48 1 1.5603 -2.4034 -3.3997 49 1 1.7330 -3.9249 -2.4872 50 1 1.9112 -2.6859 -0.3730 51 1 0.4386 -2.1631 -1.2258 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001351856348.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:28:44 Heat of formation + Delta-G solvation = -119.487682 kcal Electronic energy + Delta-G solvation = -31037.739885 eV Core-core repulsion = 26936.907730 eV Total energy + Delta-G solvation = -4100.832155 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.27815 -40.39677 -39.35477 -38.73215 -37.43729 -35.40878 -34.15080 -32.96047 -32.29434 -31.83057 -30.80871 -28.49602 -27.27797 -25.54131 -24.63891 -24.11030 -23.68769 -22.38373 -21.51490 -20.75325 -20.10982 -18.54079 -18.31767 -18.14079 -17.79893 -17.28392 -16.96779 -16.52080 -15.93421 -15.76635 -15.60820 -15.49207 -15.25117 -15.16079 -14.77876 -14.72860 -14.48660 -14.37383 -14.13265 -13.86718 -13.60787 -13.50500 -13.24893 -13.08529 -12.91259 -12.83926 -12.63542 -12.49502 -12.29364 -12.22699 -12.01172 -11.94927 -11.76460 -11.59147 -11.47466 -11.28625 -10.87751 -10.85849 -10.63810 -10.43441 -9.96310 -9.75982 -9.65195 -8.09036 -6.23040 0.27152 1.23408 1.39347 1.41799 1.52696 2.05659 2.34905 2.43114 3.04822 3.16933 3.45852 3.71504 3.80547 3.88655 4.10534 4.11596 4.26554 4.30352 4.32286 4.34260 4.42986 4.44907 4.51503 4.57104 4.59231 4.67020 4.74988 4.80353 4.85770 4.91797 4.96140 4.97160 5.00342 5.08049 5.11232 5.17983 5.19919 5.22875 5.35421 5.41552 5.42619 5.53083 5.55186 5.64596 5.94433 5.96458 6.07691 6.28304 6.36998 6.64714 6.86540 6.87867 6.98098 7.44860 8.94649 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.016654 B = 0.002645 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.910695 B =10582.946180 C =11054.558922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.105 3.895 3 H 0.070 0.930 4 O -0.587 6.587 5 C -0.082 4.082 6 C -0.118 4.118 7 C 0.102 3.898 8 N -0.571 5.571 9 C 0.510 3.490 10 O -0.528 6.528 11 C 0.498 3.502 12 O -0.538 6.538 13 N -0.566 5.566 14 C 0.115 3.885 15 C -0.110 4.110 16 C 0.043 3.957 17 C -0.533 4.533 18 H 0.049 0.951 19 C 0.014 3.986 20 N -0.914 5.914 21 Si 0.952 3.048 22 H -0.270 1.270 23 H -0.281 1.281 24 H -0.279 1.279 25 C -0.111 4.111 26 C 0.053 3.947 27 C 0.063 3.937 28 C -0.119 4.119 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.056 0.944 32 H 0.389 0.611 33 H 0.105 0.895 34 H 0.048 0.952 35 H 0.098 0.902 36 H 0.084 0.916 37 H 0.099 0.901 38 H 0.084 0.916 39 H 0.069 0.931 40 H 0.024 0.976 41 H 0.081 0.919 42 H 0.003 0.997 43 H 0.262 0.738 44 H 0.066 0.934 45 H 0.040 0.960 46 H 0.067 0.933 47 H 0.158 0.842 48 H 0.089 0.911 49 H 0.121 0.879 50 H 0.044 0.956 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.246 26.624 -0.610 28.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.046 3.954 3 H 0.088 0.912 4 O -0.395 6.395 5 C -0.100 4.100 6 C -0.156 4.156 7 C -0.019 4.019 8 N -0.303 5.303 9 C 0.293 3.707 10 O -0.408 6.408 11 C 0.282 3.718 12 O -0.419 6.419 13 N -0.297 5.297 14 C -0.007 4.007 15 C -0.149 4.149 16 C 0.024 3.976 17 C -0.571 4.571 18 H 0.067 0.933 19 C -0.185 4.185 20 N -0.554 5.554 21 Si 0.778 3.222 22 H -0.195 1.195 23 H -0.207 1.207 24 H -0.205 1.205 25 C -0.149 4.149 26 C -0.067 4.067 27 C -0.058 4.058 28 C -0.157 4.157 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.075 0.925 32 H 0.238 0.762 33 H 0.123 0.877 34 H 0.067 0.933 35 H 0.116 0.884 36 H 0.103 0.897 37 H 0.117 0.883 38 H 0.102 0.898 39 H 0.088 0.912 40 H 0.043 0.957 41 H 0.099 0.901 42 H 0.021 0.979 43 H 0.071 0.929 44 H 0.085 0.915 45 H 0.058 0.942 46 H 0.085 0.915 47 H 0.174 0.826 48 H 0.107 0.893 49 H 0.138 0.862 50 H 0.063 0.937 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -9.038 26.091 -1.188 27.637 hybrid contribution 0.062 -1.034 1.196 1.582 sum -8.976 25.057 0.008 26.616 Atomic orbital electron populations 1.22544 0.95699 1.02674 1.03410 1.21868 0.93273 0.95072 0.85172 0.91245 1.86560 1.77410 1.58535 1.17002 1.21322 0.95072 0.95701 0.97892 1.21833 0.95805 1.01531 0.96413 1.22005 0.99455 0.80648 0.99764 1.48126 1.08608 1.05877 1.67654 1.20033 0.86692 0.85785 0.78143 1.90246 1.14399 1.83842 1.52272 1.20269 0.86612 0.85979 0.78976 1.90418 1.14763 1.85928 1.50788 1.48260 1.09125 1.05659 1.66627 1.21817 0.98289 0.81055 0.99514 1.21778 0.99106 0.99377 0.94613 1.18663 0.92026 0.91462 0.95425 1.21573 1.32200 0.94642 1.08650 0.93261 1.25701 0.95224 0.99400 0.98131 1.69966 1.37902 1.14282 1.33247 0.85597 0.78097 0.78815 0.79680 1.19466 1.20669 1.20508 1.21820 1.00305 0.95938 0.96872 1.23392 0.77431 1.06963 0.98897 1.23092 0.77094 1.06589 0.99050 1.21977 1.01568 0.95771 0.96414 0.91540 0.90403 0.92545 0.76185 0.87661 0.93299 0.88387 0.89706 0.88269 0.89771 0.91236 0.95708 0.90121 0.97884 0.92920 0.91492 0.94153 0.91507 0.82636 0.89276 0.86179 0.93665 0.89163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.66 9.18 71.98 0.66 -1.00 16 2 C 0.10 1.18 3.31 30.59 0.10 1.28 16 3 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 4 O -0.59 -9.19 12.03 -148.98 -1.79 -10.98 16 5 C -0.08 -1.10 2.04 -10.77 -0.02 -1.12 16 6 C -0.12 -1.87 5.19 30.67 0.16 -1.71 16 7 C 0.10 1.87 6.44 86.36 0.56 2.43 16 8 N -0.57 -14.12 2.97 -819.64 -2.43 -16.55 16 9 C 0.51 16.16 7.67 87.27 0.67 16.83 16 10 O -0.53 -17.97 12.45 -3.22 -0.04 -18.01 16 11 C 0.50 17.79 7.62 87.27 0.66 18.45 16 12 O -0.54 -19.58 12.58 -3.26 -0.04 -19.62 16 13 N -0.57 -21.77 2.97 -820.49 -2.44 -24.21 16 14 C 0.11 4.70 6.41 86.36 0.55 5.25 16 15 C -0.11 -5.34 5.16 30.68 0.16 -5.18 16 16 C 0.04 2.17 2.06 -11.50 -0.02 2.15 16 17 C -0.53 -29.80 8.56 25.60 0.22 -29.58 16 18 H 0.05 2.75 7.74 -2.91 -0.02 2.72 16 19 C 0.01 0.78 5.30 84.65 0.45 1.23 16 20 N -0.91 -52.48 11.30 21.44 0.24 -52.24 16 21 Si 0.95 44.12 29.54 68.60 2.03 46.15 16 22 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 23 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 24 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 25 C -0.11 -4.81 5.30 30.67 0.16 -4.65 16 26 C 0.05 2.02 6.27 86.36 0.54 2.56 16 27 C 0.06 1.37 6.05 86.51 0.52 1.90 16 28 C -0.12 -2.22 4.89 30.82 0.15 -2.07 16 29 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.06 0.66 6.40 -2.39 -0.02 0.65 16 32 H 0.39 3.05 9.08 -74.05 -0.67 2.37 16 33 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.05 1.09 7.73 -2.38 -0.02 1.07 16 35 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.08 1.78 7.00 -2.38 -0.02 1.76 16 37 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.08 3.32 7.03 -2.39 -0.02 3.30 16 39 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 40 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.08 4.33 6.03 -2.39 -0.01 4.32 16 42 H 0.00 0.17 8.14 -2.38 -0.02 0.15 16 43 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 44 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 45 H 0.04 1.79 8.14 -2.38 -0.02 1.78 16 46 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 47 H 0.16 5.70 3.72 -84.64 -0.32 5.39 16 48 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 49 H 0.12 3.39 4.22 -54.60 -0.23 3.16 16 50 H 0.04 1.13 7.73 -2.39 -0.02 1.11 16 51 H 0.09 1.41 6.36 -2.39 -0.02 1.39 16 Total: -1.00 -66.94 383.81 0.79 -66.15 By element: Atomic # 1 Polarization: 22.78 SS G_CDS: -0.26 Total: 22.53 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: 5.52 Total: 6.78 kcal Atomic # 7 Polarization: -88.37 SS G_CDS: -4.63 Total: -93.00 kcal Atomic # 8 Polarization: -46.73 SS G_CDS: -1.87 Total: -48.61 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -66.94 0.79 -66.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351856348.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.339 kcal (2) G-P(sol) polarization free energy of solvation -66.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds