Wall clock time and date at job start Sat Apr 11 2020 05:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42897 * 113.99824 * 2 1 4 4 H 1.09000 * 109.50035 * 329.92619 * 3 2 1 5 5 C 1.53041 * 109.52217 * 209.84968 * 3 2 1 6 6 C 1.53035 * 109.54030 * 178.66530 * 5 3 2 7 7 C 1.52764 * 109.38432 * 61.24051 * 6 5 3 8 8 H 1.09000 * 109.50939 * 185.70651 * 7 6 5 9 9 C 1.53008 * 109.43029 * 65.42355 * 7 6 5 10 10 N 1.46925 * 109.00701 * 305.59199 * 7 6 5 11 11 C 1.34777 * 120.62824 * 233.58181 * 10 7 6 12 12 O 1.21350 * 119.99954 * 4.77581 * 11 10 7 13 13 C 1.49452 * 119.99804 * 184.77589 * 11 10 7 14 14 O 1.21348 * 119.99905 * 274.58271 * 13 11 10 15 15 N 1.34778 * 119.99550 * 94.59611 * 13 11 10 16 16 C 1.46922 * 120.63437 * 354.93892 * 15 13 11 17 17 C 1.53194 * 108.77197 * 126.37581 * 16 15 13 18 18 C 1.53040 * 109.31501 * 54.64039 * 17 16 15 19 19 C 1.53049 * 109.53260 * 298.63222 * 18 17 16 20 20 H 1.08999 * 109.49624 * 301.41379 * 19 18 17 21 21 C 1.50699 * 109.49288 * 181.31577 * 19 18 17 22 22 H 1.07997 * 120.00574 * 0.02562 * 21 19 18 23 23 C 1.37882 * 119.99887 * 179.97438 * 21 19 18 24 24 N 1.31520 * 119.99533 * 0.02562 * 23 21 19 25 25 Si 1.86796 * 120.00295 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47020 * 89.99743 * 25 23 21 27 27 H 1.48498 * 109.47040 * 210.00310 * 25 23 21 28 28 H 1.48504 * 109.46794 * 330.00327 * 25 23 21 29 29 C 1.46930 * 120.62660 * 174.92802 * 15 13 11 30 30 C 1.46924 * 118.74005 * 53.30862 * 10 7 6 31 31 H 1.09007 * 109.46748 * 60.00224 * 1 2 3 32 32 H 1.09001 * 109.47280 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47291 * 300.00441 * 1 2 3 34 34 H 1.09000 * 109.46170 * 298.68774 * 5 3 2 35 35 H 1.09005 * 109.46293 * 58.64246 * 5 3 2 36 36 H 1.09004 * 109.49890 * 181.31839 * 6 5 3 37 37 H 1.08999 * 109.50183 * 301.41608 * 6 5 3 38 38 H 1.08994 * 109.47149 * 300.52122 * 9 7 6 39 39 H 1.09000 * 109.46897 * 60.52124 * 9 7 6 40 40 H 1.08996 * 109.46795 * 180.52274 * 9 7 6 41 41 H 1.08997 * 109.58441 * 6.58834 * 16 15 13 42 42 H 1.08998 * 109.58701 * 246.16225 * 16 15 13 43 43 H 1.09005 * 109.49379 * 174.58842 * 17 16 15 44 44 H 1.09000 * 109.49565 * 294.65328 * 17 16 15 45 45 H 1.08995 * 109.46016 * 58.64556 * 18 17 16 46 46 H 1.08991 * 109.46217 * 178.62912 * 18 17 16 47 47 H 0.97007 * 119.99498 * 180.02562 * 24 23 21 48 48 H 1.08996 * 109.59029 * 113.83382 * 29 15 13 49 49 H 1.09001 * 109.58428 * 353.40629 * 29 15 13 50 50 H 1.08988 * 109.58784 * 66.42947 * 30 10 7 51 51 H 1.08997 * 109.58469 * 186.71675 * 30 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3459 1.9995 -0.5149 5 6 3.3611 1.2638 -0.7179 6 6 3.9686 2.6681 -0.7474 7 6 4.1959 3.1524 0.6835 8 1 4.5329 4.1888 0.6679 9 6 5.2546 2.2756 1.3555 10 7 2.9325 3.0564 1.4275 11 6 2.4356 4.1272 2.0778 12 8 2.9856 5.2046 1.9815 13 6 1.2071 3.9877 2.9174 14 8 0.1099 4.0786 2.4072 15 7 1.3180 3.7611 4.2414 16 6 2.6343 3.5389 4.8552 17 6 2.8081 4.5211 6.0179 18 6 1.6310 4.3744 6.9848 19 6 0.3269 4.7120 6.2583 20 1 0.3795 5.7292 5.8702 21 6 -0.8282 4.5986 7.2196 22 1 -0.6505 4.3146 8.2463 23 6 -2.1118 4.8584 6.7885 24 7 -2.3282 5.2047 5.5383 25 14 -3.5436 4.7186 7.9801 26 1 -3.7664 6.0290 8.6420 27 1 -4.7681 4.3239 7.2384 28 1 -3.2342 3.6915 9.0071 29 6 0.1249 3.7319 5.0984 30 6 2.2182 1.7726 1.4441 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3634 0.5139 0.8899 34 1 4.0332 0.5885 -0.1884 35 1 3.2193 0.9081 -1.7385 36 1 4.9197 2.6421 -1.2793 37 1 3.2858 3.3494 -1.2551 38 1 4.9166 1.2395 1.3634 39 1 6.1909 2.3482 0.8021 40 1 5.4106 2.6148 2.3795 41 1 3.4160 3.7074 4.1145 42 1 2.6956 2.5166 5.2282 43 1 3.7388 4.3032 6.5421 44 1 2.8378 5.5401 5.6320 45 1 1.5875 3.3488 7.3511 46 1 1.7646 5.0550 7.8256 47 1 -3.2312 5.3878 5.2351 48 1 -0.0184 2.7253 5.4911 49 1 -0.7491 4.0278 4.5181 50 1 2.8078 1.0333 1.9860 51 1 1.2518 1.8985 1.9323 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001351943716.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:28:47 Heat of formation + Delta-G solvation = -139.638217 kcal Electronic energy + Delta-G solvation = -31977.047613 eV Core-core repulsion = 27875.341665 eV Total energy + Delta-G solvation = -4101.705948 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.30486 -40.63022 -39.46332 -38.51206 -37.81636 -35.37856 -34.20926 -33.55973 -32.49496 -31.69416 -28.94899 -27.85034 -27.54363 -26.88891 -25.55045 -24.46335 -23.57730 -23.26533 -21.68267 -20.46138 -19.60263 -19.18858 -18.31521 -18.06468 -17.65793 -17.43931 -16.69192 -16.47434 -16.32547 -16.10205 -15.92394 -15.59400 -15.39988 -15.30530 -14.93995 -14.64509 -14.43764 -14.22506 -14.05968 -13.99705 -13.83557 -13.65667 -13.45586 -13.04619 -12.90730 -12.79948 -12.72740 -12.48279 -12.34392 -12.33205 -12.26558 -12.01359 -11.90885 -11.83427 -11.72687 -11.41365 -11.17287 -11.01315 -10.93369 -10.60966 -10.53133 -9.89272 -9.67672 -8.13483 -6.30673 0.87808 1.03778 1.34168 1.41965 1.42688 1.52968 2.19220 2.41375 2.67231 3.08597 3.16370 3.52468 3.67470 3.85478 3.87511 3.89488 4.03848 4.04819 4.21796 4.22896 4.32284 4.40452 4.46978 4.49613 4.54534 4.57651 4.62391 4.63729 4.68536 4.73935 4.81125 4.85909 4.92562 5.01034 5.03963 5.08863 5.13296 5.15160 5.18854 5.25825 5.33227 5.38050 5.44416 5.55931 5.82018 5.83793 5.91902 6.07288 6.24017 6.28605 6.55652 6.75980 6.85050 7.40105 8.90663 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.014567 B = 0.003558 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.718720 B = 7867.355230 C = 8945.742131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.384 6.384 3 C 0.078 3.922 4 H 0.051 0.949 5 C -0.109 4.109 6 C -0.120 4.120 7 C 0.122 3.878 8 H 0.090 0.910 9 C -0.155 4.155 10 N -0.577 5.577 11 C 0.528 3.472 12 O -0.544 6.544 13 C 0.497 3.503 14 O -0.564 6.564 15 N -0.584 5.584 16 C 0.105 3.895 17 C -0.127 4.127 18 C -0.103 4.103 19 C 0.035 3.965 20 H -0.018 1.018 21 C -0.533 4.533 22 H 0.067 0.933 23 C 0.010 3.990 24 N -0.918 5.918 25 Si 0.960 3.040 26 H -0.278 1.278 27 H -0.288 1.288 28 H -0.259 1.259 29 C 0.124 3.876 30 C 0.083 3.917 31 H 0.048 0.952 32 H 0.109 0.891 33 H 0.028 0.972 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.120 0.880 37 H 0.055 0.945 38 H 0.074 0.926 39 H 0.097 0.903 40 H 0.053 0.947 41 H 0.082 0.918 42 H 0.102 0.898 43 H 0.109 0.891 44 H 0.042 0.958 45 H 0.068 0.932 46 H 0.056 0.944 47 H 0.260 0.740 48 H 0.056 0.944 49 H 0.079 0.921 50 H 0.107 0.893 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.980 -13.075 -10.969 24.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.301 6.301 3 C 0.019 3.981 4 H 0.069 0.931 5 C -0.146 4.146 6 C -0.158 4.158 7 C 0.021 3.979 8 H 0.108 0.892 9 C -0.213 4.213 10 N -0.312 5.312 11 C 0.310 3.690 12 O -0.421 6.421 13 C 0.280 3.720 14 O -0.443 6.443 15 N -0.316 5.316 16 C -0.017 4.017 17 C -0.165 4.165 18 C -0.140 4.140 19 C 0.016 3.984 20 H 0.000 1.000 21 C -0.571 4.571 22 H 0.085 0.915 23 C -0.189 4.189 24 N -0.557 5.557 25 Si 0.785 3.215 26 H -0.204 1.204 27 H -0.214 1.214 28 H -0.182 1.182 29 C 0.003 3.997 30 C -0.040 4.040 31 H 0.067 0.933 32 H 0.127 0.873 33 H 0.047 0.953 34 H 0.112 0.888 35 H 0.106 0.894 36 H 0.138 0.862 37 H 0.074 0.926 38 H 0.092 0.908 39 H 0.116 0.884 40 H 0.073 0.927 41 H 0.100 0.900 42 H 0.120 0.880 43 H 0.128 0.872 44 H 0.061 0.939 45 H 0.086 0.914 46 H 0.074 0.926 47 H 0.069 0.931 48 H 0.074 0.926 49 H 0.097 0.903 50 H 0.125 0.875 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 16.675 -12.606 -11.397 23.809 hybrid contribution -1.985 0.953 0.545 2.269 sum 14.690 -11.653 -10.852 21.664 Atomic orbital electron populations 1.22967 0.80054 1.04098 1.00090 1.87867 1.20647 1.26748 1.94879 1.22457 0.97023 0.84788 0.93874 0.93053 1.21628 0.93459 0.97731 1.01800 1.21859 1.03446 0.95852 0.94683 1.21602 0.82081 1.02339 0.91869 0.89154 1.22146 0.98148 0.99969 1.01043 1.48219 1.23691 1.09410 1.49881 1.20134 0.83264 0.84892 0.80666 1.90744 1.59547 1.27028 1.64779 1.20646 0.89646 0.77735 0.83966 1.90774 1.28303 1.52070 1.73106 1.48616 1.10620 1.66489 1.05919 1.22042 0.82149 1.01293 0.96210 1.21915 0.99985 0.98442 0.96169 1.21511 0.93541 1.01455 0.97514 1.18954 0.94028 0.92814 0.92635 0.99952 1.21490 0.91905 1.46919 0.96776 0.91470 1.25917 1.01981 0.94440 0.96603 1.70089 1.21711 1.46977 1.16939 0.85523 0.78369 0.78648 0.78947 1.20372 1.21371 1.18244 1.21945 0.86309 0.99116 0.92306 1.22350 0.97179 0.84891 0.99541 0.93301 0.87261 0.95277 0.88755 0.89427 0.86221 0.92614 0.90751 0.88414 0.92736 0.89956 0.88010 0.87241 0.93947 0.91370 0.92564 0.93083 0.92574 0.90284 0.87478 0.92301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 10.82 113.37 1.23 1.71 16 2 O -0.38 -8.19 10.35 -148.98 -1.54 -9.73 16 3 C 0.08 1.62 2.76 30.67 0.08 1.70 16 4 H 0.05 1.24 7.79 -2.39 -0.02 1.22 16 5 C -0.11 -1.51 5.33 30.62 0.16 -1.35 16 6 C -0.12 -1.67 5.53 30.53 0.17 -1.51 16 7 C 0.12 2.28 3.20 44.83 0.14 2.42 16 8 H 0.09 2.01 7.00 -2.39 -0.02 1.99 16 9 C -0.16 -1.90 9.02 71.98 0.65 -1.25 16 10 N -0.58 -15.11 2.68 -797.39 -2.14 -17.25 16 11 C 0.53 19.29 5.47 87.27 0.48 19.77 16 12 O -0.54 -22.47 16.51 -3.25 -0.05 -22.52 16 13 C 0.50 21.84 5.60 87.27 0.49 22.33 16 14 O -0.56 -29.61 16.33 -3.24 -0.05 -29.66 16 15 N -0.58 -24.20 2.97 -820.49 -2.44 -26.64 16 16 C 0.10 3.20 6.36 86.36 0.55 3.75 16 17 C -0.13 -3.99 6.08 30.67 0.19 -3.80 16 18 C -0.10 -3.92 5.11 30.62 0.16 -3.76 16 19 C 0.03 1.76 2.25 -11.46 -0.03 1.74 16 20 H -0.02 -1.06 8.14 -2.39 -0.02 -1.07 16 21 C -0.53 -28.92 8.56 25.60 0.22 -28.70 16 22 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16 23 C 0.01 0.55 5.30 84.66 0.45 1.00 16 24 N -0.92 -55.83 11.40 21.45 0.24 -55.59 16 25 Si 0.96 43.81 29.54 68.60 2.03 45.84 16 26 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 27 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 28 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 29 C 0.12 6.14 5.39 86.36 0.47 6.61 16 30 C 0.08 2.00 5.53 86.36 0.48 2.47 16 31 H 0.05 0.91 8.09 -2.38 -0.02 0.89 16 32 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.03 0.69 8.03 -2.39 -0.02 0.67 16 34 H 0.09 1.06 6.49 -2.39 -0.02 1.04 16 35 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 36 H 0.12 0.92 8.14 -2.38 -0.02 0.91 16 37 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.07 0.79 5.74 -2.39 -0.01 0.77 16 39 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.08 2.28 6.31 -2.39 -0.02 2.27 16 42 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 43 H 0.11 2.49 8.14 -2.38 -0.02 2.47 16 44 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 46 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 47 H 0.26 15.25 8.31 -92.70 -0.77 14.48 16 48 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 49 H 0.08 4.68 5.16 -2.39 -0.01 4.67 16 50 H 0.11 2.07 7.51 -2.39 -0.02 2.05 16 51 H 0.06 1.81 6.11 -2.39 -0.01 1.79 16 Total: -1.00 -76.07 393.55 2.84 -73.23 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: 0.91 Total: 19.21 kcal Atomic # 6 Polarization: 17.23 SS G_CDS: 5.88 Total: 23.11 kcal Atomic # 7 Polarization: -95.15 SS G_CDS: -4.33 Total: -99.48 kcal Atomic # 8 Polarization: -60.26 SS G_CDS: -1.65 Total: -61.91 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -76.07 2.84 -73.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351943716.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.406 kcal (2) G-P(sol) polarization free energy of solvation -76.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds