Wall clock time and date at job start Sat Apr 11 2020 05:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34231 * 116.99901 * 2 1 4 4 O 1.20833 * 120.00006 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00324 * 179.97438 * 3 2 1 6 6 C 1.52995 * 109.47410 * 179.97438 * 5 3 2 7 7 N 1.46500 * 109.47110 * 180.02562 * 6 5 3 8 8 C 1.37096 * 120.00398 * 264.44142 * 7 6 5 9 9 H 1.07995 * 120.00140 * 137.82228 * 8 7 6 10 10 C 1.38952 * 119.99538 * 317.82695 * 8 7 6 11 11 N 1.31414 * 120.00221 * 342.04850 * 10 8 7 12 12 Si 1.86802 * 119.99886 * 162.04809 * 10 8 7 13 13 H 1.48499 * 109.47129 * 89.99595 * 12 10 8 14 14 H 1.48498 * 109.47403 * 209.99983 * 12 10 8 15 15 H 1.48502 * 109.46927 * 329.99843 * 12 10 8 16 16 C 1.34780 * 119.99664 * 84.44122 * 7 6 5 17 17 O 1.21288 * 120.00446 * 5.67164 * 16 7 6 18 18 C 1.50697 * 119.99738 * 185.66230 * 16 7 6 19 19 H 1.09002 * 109.22676 * 38.42645 * 18 16 7 20 20 C 1.52827 * 109.19912 * 279.03917 * 18 16 7 21 21 C 1.53662 * 110.60085 * 293.45057 * 20 18 16 22 22 C 1.52252 * 107.57529 * 303.87068 * 21 20 18 23 23 H 1.08997 * 110.77455 * 302.29677 * 22 21 20 24 24 C 1.53248 * 113.91418 * 177.27116 * 22 21 20 25 25 C 1.54990 * 104.18620 * 215.56062 * 24 22 21 26 26 H 1.08997 * 110.34849 * 243.62815 * 25 24 22 27 27 C 1.53001 * 110.34610 * 121.46900 * 25 24 22 28 28 C 1.55185 * 104.93152 * 2.49593 * 25 24 22 29 29 N 1.47097 * 103.52621 * 23.99646 * 28 25 24 30 30 C 1.45667 * 116.52960 * 197.59655 * 29 28 25 31 31 H 1.08993 * 109.47526 * 300.00550 * 1 2 3 32 32 H 1.09008 * 109.46708 * 60.00272 * 1 2 3 33 33 H 1.08997 * 109.47266 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.46919 * 59.99964 * 5 3 2 35 35 H 1.09001 * 109.47217 * 300.00445 * 5 3 2 36 36 H 1.08994 * 109.47350 * 60.00229 * 6 5 3 37 37 H 1.09010 * 109.46969 * 299.99957 * 6 5 3 38 38 H 0.96999 * 119.99929 * 180.02562 * 11 10 8 39 39 H 1.08998 * 109.24869 * 53.74168 * 20 18 16 40 40 H 1.09003 * 109.24742 * 173.16302 * 20 18 16 41 41 H 1.08997 * 109.83609 * 184.35871 * 21 20 18 42 42 H 1.08995 * 109.89776 * 63.42393 * 21 20 18 43 43 H 1.08999 * 110.49029 * 334.23890 * 24 22 21 44 44 H 1.08998 * 110.49124 * 96.88320 * 24 22 21 45 45 H 1.08991 * 109.47885 * 60.00046 * 27 25 24 46 46 H 1.09000 * 109.47132 * 180.02562 * 27 25 24 47 47 H 1.09002 * 109.47030 * 299.99694 * 27 25 24 48 48 H 1.08999 * 110.61429 * 265.48368 * 28 25 24 49 49 H 1.09006 * 110.61275 * 142.50318 * 28 25 24 50 50 H 1.09005 * 109.79325 * 63.07218 * 30 29 28 51 51 H 1.08999 * 109.79455 * 302.22954 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 6 4.0001 2.7422 -0.0002 7 7 5.4630 2.8189 -0.0002 8 6 6.1417 2.9702 1.1813 9 1 7.0428 2.4035 1.3629 10 6 5.6698 3.8529 2.1453 11 7 4.8064 4.7868 1.8147 12 14 6.2629 3.7118 3.9110 13 1 7.4754 4.5493 4.0943 14 1 5.1948 4.1791 4.8308 15 1 6.5899 2.2948 4.2116 16 6 6.1419 2.7406 -1.1620 17 8 5.5406 2.7104 -2.2149 18 6 7.6480 2.6910 -1.1527 19 1 7.9818 2.0792 -0.3145 20 6 8.1966 4.1082 -0.9912 21 6 7.8693 4.9588 -2.2284 22 6 8.4329 4.2371 -3.4447 23 1 9.5060 4.0790 -3.3376 24 6 8.1286 4.9325 -4.7760 25 6 7.9156 3.7660 -5.7740 26 1 8.6797 3.7876 -6.5509 27 6 6.5211 3.8478 -6.3983 28 6 8.0518 2.4782 -4.9187 29 7 7.7271 2.9330 -3.5580 30 6 8.1417 2.0636 -2.4652 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3634 -1.0276 0.0005 34 1 3.9564 0.7807 -0.8892 35 1 3.9557 0.7810 0.8908 36 1 3.6100 3.2369 0.8893 37 1 3.6107 3.2357 -0.8907 38 1 4.4774 5.4032 2.4876 39 1 7.7495 4.5684 -0.1101 40 1 9.2780 4.0624 -0.8624 41 1 8.3315 5.9415 -2.1344 42 1 6.7894 5.0663 -2.3296 43 1 7.2235 5.5344 -4.6939 44 1 8.9717 5.5502 -5.0854 45 1 6.4157 4.7936 -6.9295 46 1 6.3865 3.0217 -7.0964 47 1 5.7674 3.7861 -5.6132 48 1 9.0712 2.0948 -4.9621 49 1 7.3414 1.7207 -5.2499 50 1 9.2286 1.9828 -2.4498 51 1 7.6992 1.0755 -2.5914 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001528657649.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:28:59 Heat of formation + Delta-G solvation = -113.492126 kcal Electronic energy + Delta-G solvation = -31767.828080 eV Core-core repulsion = 27667.255911 eV Total energy + Delta-G solvation = -4100.572168 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.08893 -39.89847 -38.16373 -36.16342 -35.08720 -34.36782 -31.92670 -31.89444 -30.97563 -30.01960 -27.51226 -26.93174 -25.82469 -24.91461 -23.68945 -22.23281 -21.35201 -20.26260 -19.77332 -19.68626 -18.62678 -17.30858 -16.41331 -16.21062 -16.08907 -15.90046 -15.25786 -14.90395 -14.66693 -14.39183 -14.12413 -13.70109 -13.54507 -13.37599 -13.17614 -13.04571 -12.78087 -12.45744 -12.41788 -12.13209 -11.99548 -11.88957 -11.73422 -11.61480 -11.38899 -11.18627 -11.09330 -10.90980 -10.74038 -10.69076 -10.52142 -10.50899 -10.36167 -10.32932 -10.19412 -10.02244 -9.94111 -9.76128 -9.65975 -9.00309 -8.20422 -7.63671 -7.35427 -6.30178 -4.05683 2.70513 3.08509 3.14316 3.23853 3.25458 4.04191 4.20628 4.41836 4.79622 4.80073 5.00719 5.03173 5.14438 5.25709 5.32485 5.33717 5.43686 5.53052 5.55707 5.63961 5.66660 5.70099 5.75647 5.86319 5.87223 5.91907 5.94810 6.00226 6.05175 6.07790 6.21095 6.26593 6.28458 6.33704 6.37100 6.42255 6.52728 6.60438 6.61920 6.68222 6.77473 6.95037 7.04721 7.06077 7.38192 7.47288 7.51415 7.77705 8.07096 8.22205 8.42761 9.16216 9.65820 10.08892 10.72466 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.009222 B = 0.004506 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3035.557099 B = 6212.480699 C = 8421.114328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.367 6.367 3 C 0.465 3.535 4 O -0.505 6.505 5 C -0.125 4.125 6 C 0.139 3.861 7 N -0.452 5.452 8 C -0.342 4.342 9 H 0.085 0.915 10 C 0.047 3.953 11 N -0.855 5.855 12 Si 0.905 3.095 13 H -0.277 1.277 14 H -0.284 1.284 15 H -0.270 1.270 16 C 0.491 3.509 17 O -0.562 6.562 18 C -0.085 4.085 19 H 0.085 0.915 20 C -0.102 4.102 21 C -0.101 4.101 22 C 0.063 3.937 23 H 0.038 0.962 24 C -0.111 4.111 25 C -0.090 4.090 26 H 0.065 0.935 27 C -0.138 4.138 28 C 0.048 3.952 29 N -0.486 5.486 30 C 0.077 3.923 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.062 0.938 38 H 0.268 0.732 39 H 0.089 0.911 40 H 0.048 0.952 41 H 0.055 0.945 42 H 0.079 0.921 43 H 0.074 0.926 44 H 0.059 0.941 45 H 0.047 0.953 46 H 0.047 0.953 47 H 0.070 0.930 48 H 0.027 0.973 49 H 0.076 0.924 50 H 0.025 0.975 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.764 -5.042 -6.995 9.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.285 6.285 3 C 0.308 3.692 4 O -0.392 6.392 5 C -0.164 4.164 6 C 0.015 3.985 7 N -0.173 5.173 8 C -0.470 4.470 9 H 0.102 0.898 10 C -0.160 4.160 11 N -0.491 5.491 12 Si 0.732 3.268 13 H -0.203 1.203 14 H -0.209 1.209 15 H -0.194 1.194 16 C 0.279 3.721 17 O -0.443 6.443 18 C -0.107 4.107 19 H 0.103 0.897 20 C -0.140 4.140 21 C -0.139 4.139 22 C -0.045 4.045 23 H 0.056 0.944 24 C -0.149 4.149 25 C -0.109 4.109 26 H 0.083 0.917 27 C -0.196 4.196 28 C -0.080 4.080 29 N -0.210 5.210 30 C -0.052 4.052 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.113 0.887 34 H 0.115 0.885 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.107 0.893 40 H 0.067 0.933 41 H 0.074 0.926 42 H 0.098 0.902 43 H 0.093 0.907 44 H 0.078 0.922 45 H 0.066 0.934 46 H 0.066 0.934 47 H 0.089 0.911 48 H 0.045 0.955 49 H 0.094 0.906 50 H 0.043 0.957 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.545 -4.580 -7.367 9.040 hybrid contribution 0.960 -0.192 1.127 1.492 sum 3.505 -4.772 -6.240 8.602 Atomic orbital electron populations 1.23156 0.77474 1.02961 1.02311 1.86543 1.22681 1.34552 1.84704 1.24155 0.92483 0.80834 0.71693 1.90653 1.67283 1.36226 1.45038 1.21972 0.85632 1.03841 1.04967 1.20934 0.83058 0.90081 1.04462 1.43328 1.03768 1.64837 1.05356 1.19233 1.11004 1.23290 0.93440 0.89750 1.25393 0.96859 0.93725 1.00001 1.69953 1.30570 1.14364 1.34183 0.86299 0.78517 0.78795 0.83234 1.20311 1.20902 1.19417 1.20244 0.88825 0.79305 0.83720 1.90587 1.69920 1.53017 1.30806 1.21129 0.95266 0.97846 0.96410 0.89674 1.21395 0.98975 0.94253 0.99404 1.21455 1.02459 0.96900 0.93104 1.22420 0.95065 0.91734 0.95294 0.94367 1.22238 1.01502 0.97037 0.94152 1.22064 0.97722 0.94654 0.96489 0.91702 1.21780 0.96859 1.00345 1.00595 1.22870 0.98025 0.96979 0.90171 1.63908 1.54283 1.02825 0.99981 1.21827 0.95851 0.96527 0.90964 0.92207 0.92200 0.88685 0.88536 0.87988 0.87939 0.91941 0.92132 0.89288 0.93294 0.92607 0.90232 0.90734 0.92195 0.93381 0.93411 0.91062 0.95499 0.90568 0.95733 0.91224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.44 10.56 101.05 1.07 1.51 16 2 O -0.37 -6.08 10.57 -39.26 -0.41 -6.49 16 3 C 0.47 9.03 7.96 36.01 0.29 9.32 16 4 O -0.51 -11.16 15.73 -18.76 -0.30 -11.45 16 5 C -0.13 -2.48 6.10 -27.89 -0.17 -2.65 16 6 C 0.14 3.31 4.21 -4.04 -0.02 3.29 16 7 N -0.45 -10.73 2.50 -114.82 -0.29 -11.01 16 8 C -0.34 -8.11 7.47 -14.93 -0.11 -8.22 16 9 H 0.08 1.91 6.65 -52.49 -0.35 1.56 16 10 C 0.05 1.15 4.95 -17.47 -0.09 1.06 16 11 N -0.86 -22.46 11.68 55.50 0.65 -21.81 16 12 Si 0.91 18.93 29.59 -169.99 -5.03 13.90 16 13 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 14 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 15 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 16 C 0.49 11.17 5.92 -10.99 -0.06 11.10 16 17 O -0.56 -13.93 14.52 5.55 0.08 -13.85 16 18 C -0.08 -1.62 2.27 -91.54 -0.21 -1.82 16 19 H 0.09 1.57 6.74 -51.93 -0.35 1.22 16 20 C -0.10 -1.87 5.30 -26.48 -0.14 -2.01 16 21 C -0.10 -1.79 5.40 -26.77 -0.14 -1.94 16 22 C 0.06 1.00 2.50 -66.95 -0.17 0.83 16 23 H 0.04 0.58 7.98 -51.93 -0.41 0.16 16 24 C -0.11 -1.55 6.29 -25.55 -0.16 -1.71 16 25 C -0.09 -1.18 3.68 -88.41 -0.33 -1.51 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 C -0.14 -1.81 8.95 37.16 0.33 -1.48 16 28 C 0.05 0.70 6.25 -2.56 -0.02 0.68 16 29 N -0.49 -8.38 3.28 -224.50 -0.74 -9.11 16 30 C 0.08 1.32 5.04 -4.17 -0.02 1.30 16 31 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 32 H 0.06 0.75 8.13 -51.92 -0.42 0.32 16 33 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.10 1.87 8.14 -51.93 -0.42 1.45 16 35 H 0.10 1.90 8.14 -51.93 -0.42 1.48 16 36 H 0.10 2.67 5.80 -51.93 -0.30 2.37 16 37 H 0.06 1.62 7.48 -51.92 -0.39 1.23 16 38 H 0.27 6.76 8.31 -40.82 -0.34 6.43 16 39 H 0.09 1.88 7.05 -51.93 -0.37 1.51 16 40 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.08 1.70 7.53 -51.93 -0.39 1.31 16 43 H 0.07 1.12 7.59 -51.93 -0.39 0.72 16 44 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 48 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.08 1.13 7.88 -51.93 -0.41 0.72 16 50 H 0.02 0.38 7.99 -51.93 -0.41 -0.04 16 51 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 396.96 15.07 5.98 5.98 Total: -1.00 -29.07 396.96 -8.83 -37.90 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: -8.83 Total: 8.20 kcal Atomic # 6 Polarization: 7.69 SS G_CDS: 0.05 Total: 7.74 kcal Atomic # 7 Polarization: -41.56 SS G_CDS: -0.37 Total: -41.93 kcal Atomic # 8 Polarization: -31.16 SS G_CDS: -0.63 Total: -31.79 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.03 Total: 13.90 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -29.07 -8.83 -37.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001528657649.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.595 kcal (2) G-P(sol) polarization free energy of solvation -29.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds