Wall clock time and date at job start Sat Apr 11 2020 05:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34231 * 116.99901 * 2 1 4 4 O 1.20833 * 120.00006 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00324 * 179.97438 * 3 2 1 6 6 C 1.52995 * 109.47410 * 179.97438 * 5 3 2 7 7 N 1.46500 * 109.47110 * 180.02562 * 6 5 3 8 8 C 1.37096 * 120.00398 * 264.44142 * 7 6 5 9 9 H 1.07995 * 120.00140 * 137.82228 * 8 7 6 10 10 C 1.38952 * 119.99538 * 317.82695 * 8 7 6 11 11 N 1.31414 * 120.00221 * 342.04850 * 10 8 7 12 12 Si 1.86802 * 119.99886 * 162.04809 * 10 8 7 13 13 H 1.48499 * 109.47129 * 89.99595 * 12 10 8 14 14 H 1.48498 * 109.47403 * 209.99983 * 12 10 8 15 15 H 1.48502 * 109.46927 * 329.99843 * 12 10 8 16 16 C 1.34780 * 119.99664 * 84.44122 * 7 6 5 17 17 O 1.21288 * 120.00446 * 5.67164 * 16 7 6 18 18 C 1.50697 * 119.99738 * 185.66230 * 16 7 6 19 19 H 1.09002 * 109.22676 * 38.42645 * 18 16 7 20 20 C 1.52827 * 109.19912 * 279.03917 * 18 16 7 21 21 C 1.53662 * 110.60085 * 293.45057 * 20 18 16 22 22 C 1.52252 * 107.57529 * 303.87068 * 21 20 18 23 23 H 1.08997 * 110.77455 * 302.29677 * 22 21 20 24 24 C 1.53248 * 113.91418 * 177.27116 * 22 21 20 25 25 C 1.54990 * 104.18620 * 215.56062 * 24 22 21 26 26 H 1.08997 * 110.34849 * 243.62815 * 25 24 22 27 27 C 1.53001 * 110.34610 * 121.46900 * 25 24 22 28 28 C 1.55185 * 104.93152 * 2.49593 * 25 24 22 29 29 N 1.47097 * 103.52621 * 23.99646 * 28 25 24 30 30 C 1.45667 * 116.52960 * 197.59655 * 29 28 25 31 31 H 1.08993 * 109.47526 * 300.00550 * 1 2 3 32 32 H 1.09008 * 109.46708 * 60.00272 * 1 2 3 33 33 H 1.08997 * 109.47266 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.46919 * 59.99964 * 5 3 2 35 35 H 1.09001 * 109.47217 * 300.00445 * 5 3 2 36 36 H 1.08994 * 109.47350 * 60.00229 * 6 5 3 37 37 H 1.09010 * 109.46969 * 299.99957 * 6 5 3 38 38 H 0.96999 * 119.99929 * 180.02562 * 11 10 8 39 39 H 1.08998 * 109.24869 * 53.74168 * 20 18 16 40 40 H 1.09003 * 109.24742 * 173.16302 * 20 18 16 41 41 H 1.08997 * 109.83609 * 184.35871 * 21 20 18 42 42 H 1.08995 * 109.89776 * 63.42393 * 21 20 18 43 43 H 1.08999 * 110.49029 * 334.23890 * 24 22 21 44 44 H 1.08998 * 110.49124 * 96.88320 * 24 22 21 45 45 H 1.08991 * 109.47885 * 60.00046 * 27 25 24 46 46 H 1.09000 * 109.47132 * 180.02562 * 27 25 24 47 47 H 1.09002 * 109.47030 * 299.99694 * 27 25 24 48 48 H 1.08999 * 110.61429 * 265.48368 * 28 25 24 49 49 H 1.09006 * 110.61275 * 142.50318 * 28 25 24 50 50 H 1.09005 * 109.79325 * 63.07218 * 30 29 28 51 51 H 1.08999 * 109.79455 * 302.22954 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 6 4.0001 2.7422 -0.0002 7 7 5.4630 2.8189 -0.0002 8 6 6.1417 2.9702 1.1813 9 1 7.0428 2.4035 1.3629 10 6 5.6698 3.8529 2.1453 11 7 4.8064 4.7868 1.8147 12 14 6.2629 3.7118 3.9110 13 1 7.4754 4.5493 4.0943 14 1 5.1948 4.1791 4.8308 15 1 6.5899 2.2948 4.2116 16 6 6.1419 2.7406 -1.1620 17 8 5.5406 2.7104 -2.2149 18 6 7.6480 2.6910 -1.1527 19 1 7.9818 2.0792 -0.3145 20 6 8.1966 4.1082 -0.9912 21 6 7.8693 4.9588 -2.2284 22 6 8.4329 4.2371 -3.4447 23 1 9.5060 4.0790 -3.3376 24 6 8.1286 4.9325 -4.7760 25 6 7.9156 3.7660 -5.7740 26 1 8.6797 3.7876 -6.5509 27 6 6.5211 3.8478 -6.3983 28 6 8.0518 2.4782 -4.9187 29 7 7.7271 2.9330 -3.5580 30 6 8.1417 2.0636 -2.4652 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3634 -1.0276 0.0005 34 1 3.9564 0.7807 -0.8892 35 1 3.9557 0.7810 0.8908 36 1 3.6100 3.2369 0.8893 37 1 3.6107 3.2357 -0.8907 38 1 4.4774 5.4032 2.4876 39 1 7.7495 4.5684 -0.1101 40 1 9.2780 4.0624 -0.8624 41 1 8.3315 5.9415 -2.1344 42 1 6.7894 5.0663 -2.3296 43 1 7.2235 5.5344 -4.6939 44 1 8.9717 5.5502 -5.0854 45 1 6.4157 4.7936 -6.9295 46 1 6.3865 3.0217 -7.0964 47 1 5.7674 3.7861 -5.6132 48 1 9.0712 2.0948 -4.9621 49 1 7.3414 1.7207 -5.2499 50 1 9.2286 1.9828 -2.4498 51 1 7.6992 1.0755 -2.5914 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001528657649.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:28:58 Heat of formation + Delta-G solvation = -129.152796 kcal Electronic energy + Delta-G solvation = -31768.507177 eV Core-core repulsion = 27667.255911 eV Total energy + Delta-G solvation = -4101.251266 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.61808 -41.31892 -39.76549 -37.65868 -36.71537 -35.97714 -33.76217 -33.20241 -32.57463 -31.47279 -28.75499 -28.19141 -27.04190 -26.77501 -25.29750 -23.60221 -22.82540 -21.73286 -21.27920 -20.83735 -20.36155 -18.88941 -17.98217 -17.81670 -17.60378 -17.44693 -16.65047 -16.38099 -16.27039 -15.82853 -15.68292 -15.15929 -14.98269 -14.85749 -14.53725 -14.35680 -14.14746 -13.92102 -13.77015 -13.69162 -13.43656 -13.38111 -13.07848 -12.97920 -12.86128 -12.79131 -12.58483 -12.53798 -12.38093 -12.10368 -11.95286 -11.91403 -11.82163 -11.74083 -11.60262 -11.45234 -11.38567 -11.15007 -11.06930 -10.84974 -9.99327 -9.28218 -8.87692 -8.18144 -5.98827 1.12542 1.46373 1.52075 1.61707 1.68321 2.25924 2.44922 3.08114 3.13793 3.28069 3.65449 3.81499 3.85742 4.02193 4.07992 4.15594 4.18868 4.23456 4.29694 4.30291 4.32830 4.40166 4.48407 4.55149 4.60812 4.63705 4.68572 4.71354 4.74936 4.80770 4.86031 4.91415 4.96792 5.02442 5.08722 5.10809 5.17468 5.20526 5.23399 5.26540 5.34564 5.43312 5.51694 5.53029 5.57594 5.60031 6.20959 6.28678 6.50884 6.56660 6.69935 7.27334 7.81212 8.24527 8.85465 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.009222 B = 0.004506 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3035.557099 B = 6212.480699 C = 8421.114328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.362 6.362 3 C 0.472 3.528 4 O -0.539 6.539 5 C -0.113 4.113 6 C 0.148 3.852 7 N -0.464 5.464 8 C -0.340 4.340 9 H 0.100 0.900 10 C 0.002 3.998 11 N -0.899 5.899 12 Si 0.972 3.028 13 H -0.272 1.272 14 H -0.293 1.293 15 H -0.255 1.255 16 C 0.483 3.517 17 O -0.589 6.589 18 C -0.081 4.081 19 H 0.093 0.907 20 C -0.097 4.097 21 C -0.097 4.097 22 C 0.066 3.934 23 H 0.061 0.939 24 C -0.110 4.110 25 C -0.086 4.086 26 H 0.096 0.904 27 C -0.134 4.134 28 C 0.048 3.952 29 N -0.520 5.520 30 C 0.083 3.917 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.139 0.861 34 H 0.101 0.899 35 H 0.119 0.881 36 H 0.077 0.923 37 H 0.025 0.975 38 H 0.265 0.735 39 H 0.053 0.947 40 H 0.083 0.917 41 H 0.072 0.928 42 H 0.029 0.971 43 H 0.052 0.948 44 H 0.088 0.912 45 H 0.060 0.940 46 H 0.060 0.940 47 H 0.029 0.971 48 H 0.048 0.952 49 H 0.065 0.935 50 H 0.054 0.946 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.306 -6.698 -7.401 11.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.279 6.279 3 C 0.316 3.684 4 O -0.429 6.429 5 C -0.152 4.152 6 C 0.024 3.976 7 N -0.185 5.185 8 C -0.468 4.468 9 H 0.117 0.883 10 C -0.200 4.200 11 N -0.536 5.536 12 Si 0.796 3.204 13 H -0.197 1.197 14 H -0.219 1.219 15 H -0.178 1.178 16 C 0.273 3.727 17 O -0.472 6.472 18 C -0.103 4.103 19 H 0.111 0.889 20 C -0.135 4.135 21 C -0.135 4.135 22 C -0.042 4.042 23 H 0.079 0.921 24 C -0.148 4.148 25 C -0.104 4.104 26 H 0.114 0.886 27 C -0.192 4.192 28 C -0.080 4.080 29 N -0.244 5.244 30 C -0.046 4.046 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.157 0.843 34 H 0.120 0.880 35 H 0.137 0.863 36 H 0.095 0.905 37 H 0.043 0.957 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.101 0.899 41 H 0.091 0.909 42 H 0.048 0.952 43 H 0.070 0.930 44 H 0.107 0.893 45 H 0.079 0.921 46 H 0.079 0.921 47 H 0.049 0.951 48 H 0.066 0.934 49 H 0.083 0.917 50 H 0.072 0.928 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.100 -6.278 -7.779 11.222 hybrid contribution 0.056 0.313 1.189 1.230 sum 5.155 -5.966 -6.590 10.276 Atomic orbital electron populations 1.23577 0.74845 1.05873 1.02384 1.86509 1.25120 1.32385 1.83875 1.23927 0.92242 0.81229 0.70958 1.90644 1.67901 1.37567 1.46784 1.21707 0.86548 1.01004 1.05915 1.20607 0.83585 0.92219 1.01230 1.43564 1.03658 1.65223 1.06064 1.19567 1.11174 1.22841 0.93185 0.88254 1.26204 0.96927 0.93168 1.03730 1.70105 1.32592 1.15660 1.35228 0.85264 0.77635 0.79388 0.78119 1.19739 1.21921 1.17825 1.20984 0.90634 0.78167 0.82919 1.90564 1.70994 1.54004 1.31639 1.21167 0.92071 0.98720 0.98336 0.88885 1.21336 1.00597 0.93458 0.98079 1.21369 0.99479 0.98247 0.94413 1.22412 0.95761 0.91009 0.95001 0.92146 1.22251 1.01624 0.97347 0.93586 1.22099 0.98173 0.93420 0.96749 0.88551 1.21723 0.96123 1.01665 0.99644 1.22904 0.98817 0.97439 0.88797 1.63820 1.55767 1.03625 1.01232 1.21739 0.97271 0.95794 0.89751 0.92132 0.92268 0.84315 0.88045 0.86326 0.90494 0.95687 0.92569 0.92781 0.89874 0.90910 0.95245 0.92959 0.89335 0.92074 0.92068 0.95139 0.93361 0.91656 0.92826 0.91966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 10.56 113.37 1.20 1.82 16 2 O -0.36 -11.68 10.57 -51.43 -0.54 -12.22 16 3 C 0.47 18.72 7.96 71.24 0.57 19.29 16 4 O -0.54 -24.84 15.73 21.94 0.35 -24.49 16 5 C -0.11 -4.60 6.10 29.85 0.18 -4.42 16 6 C 0.15 7.48 4.21 86.38 0.36 7.84 16 7 N -0.46 -22.88 2.50 -635.55 -1.59 -24.47 16 8 C -0.34 -16.35 7.47 84.04 0.63 -15.73 16 9 H 0.10 4.41 6.65 -2.91 -0.02 4.39 16 10 C 0.00 0.12 4.95 84.93 0.42 0.54 16 11 N -0.90 -49.43 11.68 21.66 0.25 -49.17 16 12 Si 0.97 38.99 29.59 68.60 2.03 41.02 16 13 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 14 H -0.29 -12.14 7.11 99.48 0.71 -11.43 16 15 H -0.25 -9.53 7.11 99.48 0.71 -8.82 16 16 C 0.48 22.73 5.92 87.66 0.52 23.25 16 17 O -0.59 -30.69 14.52 -3.05 -0.04 -30.73 16 18 C -0.08 -3.06 2.27 -11.39 -0.03 -3.09 16 19 H 0.09 3.31 6.74 -2.39 -0.02 3.29 16 20 C -0.10 -3.48 5.30 30.76 0.16 -3.32 16 21 C -0.10 -3.45 5.40 30.57 0.17 -3.29 16 22 C 0.07 1.97 2.50 44.40 0.11 2.08 16 23 H 0.06 1.57 7.98 -2.39 -0.02 1.55 16 24 C -0.11 -2.86 6.29 31.36 0.20 -2.67 16 25 C -0.09 -2.04 3.68 -9.36 -0.03 -2.07 16 26 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 27 C -0.13 -3.43 8.95 71.98 0.64 -2.79 16 28 C 0.05 1.30 6.25 87.01 0.54 1.85 16 29 N -0.52 -17.42 3.28 -864.18 -2.84 -20.26 16 30 C 0.08 2.70 5.04 86.75 0.44 3.14 16 31 H 0.06 1.45 8.13 -2.39 -0.02 1.43 16 32 H 0.06 1.43 8.13 -2.38 -0.02 1.41 16 33 H 0.14 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.10 4.03 8.14 -2.39 -0.02 4.01 16 35 H 0.12 4.42 8.14 -2.39 -0.02 4.40 16 36 H 0.08 4.27 5.80 -2.39 -0.01 4.26 16 37 H 0.02 1.40 7.48 -2.38 -0.02 1.38 16 38 H 0.26 14.02 8.31 -92.71 -0.77 13.25 16 39 H 0.05 2.32 7.05 -2.39 -0.02 2.30 16 40 H 0.08 2.42 8.14 -2.39 -0.02 2.41 16 41 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 42 H 0.03 1.32 7.53 -2.39 -0.02 1.30 16 43 H 0.05 1.58 7.59 -2.39 -0.02 1.56 16 44 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 45 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 46 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 47 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 48 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 49 H 0.06 1.88 7.88 -2.38 -0.02 1.86 16 50 H 0.05 1.44 7.99 -2.38 -0.02 1.42 16 51 H 0.06 2.08 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -67.74 396.96 4.60 -63.15 By element: Atomic # 1 Polarization: 33.83 SS G_CDS: 0.90 Total: 34.73 kcal Atomic # 6 Polarization: 16.37 SS G_CDS: 6.08 Total: 22.44 kcal Atomic # 7 Polarization: -89.73 SS G_CDS: -4.17 Total: -93.90 kcal Atomic # 8 Polarization: -67.20 SS G_CDS: -0.24 Total: -67.45 kcal Atomic # 14 Polarization: 38.99 SS G_CDS: 2.03 Total: 41.02 kcal Total: -67.74 4.60 -63.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001528657649.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.004 kcal (2) G-P(sol) polarization free energy of solvation -67.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds