Wall clock time and date at job start Sat Apr 11 2020 05:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34229 * 117.00007 * 2 1 4 4 O 1.20821 * 119.99892 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99986 * 179.97438 * 3 2 1 6 6 C 1.52996 * 109.47062 * 180.02562 * 5 3 2 7 7 N 1.46505 * 109.47041 * 179.97438 * 6 5 3 8 8 C 1.37093 * 120.00295 * 263.73751 * 7 6 5 9 9 H 1.08003 * 119.99823 * 138.26720 * 8 7 6 10 10 C 1.38945 * 120.00301 * 318.27205 * 8 7 6 11 11 N 1.31418 * 119.99843 * 342.19179 * 10 8 7 12 12 Si 1.86797 * 120.00363 * 162.19381 * 10 8 7 13 13 H 1.48497 * 109.47216 * 359.97438 * 12 10 8 14 14 H 1.48505 * 109.47375 * 119.99811 * 12 10 8 15 15 H 1.48500 * 109.47211 * 239.99814 * 12 10 8 16 16 C 1.34773 * 119.99570 * 83.73645 * 7 6 5 17 17 O 1.21301 * 120.00151 * 5.52112 * 16 7 6 18 18 C 1.50702 * 120.00252 * 185.51470 * 16 7 6 19 19 H 1.09002 * 109.23308 * 35.02276 * 18 16 7 20 20 C 1.52830 * 109.24242 * 275.58584 * 18 16 7 21 21 C 1.53550 * 110.65368 * 185.83124 * 20 18 16 22 22 C 1.52369 * 107.58302 * 56.43227 * 21 20 18 23 23 H 1.08993 * 111.45019 * 59.05886 * 22 21 20 24 24 C 1.53930 * 113.26014 * 185.08302 * 22 21 20 25 25 C 1.55331 * 102.08661 * 155.07102 * 24 22 21 26 26 H 1.09000 * 110.42560 * 96.72162 * 25 24 22 27 27 C 1.52997 * 110.33649 * 218.92616 * 25 24 22 28 28 C 1.54804 * 104.98787 * 337.79900 * 25 24 22 29 29 N 1.46334 * 105.96478 * 356.35746 * 28 25 24 30 30 C 1.45530 * 117.22673 * 151.95140 * 29 28 25 31 31 H 1.09001 * 109.47684 * 299.99898 * 1 2 3 32 32 H 1.09007 * 109.47406 * 59.99654 * 1 2 3 33 33 H 1.08997 * 109.47565 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.46869 * 60.00078 * 5 3 2 35 35 H 1.08997 * 109.47127 * 300.00576 * 5 3 2 36 36 H 1.09000 * 109.46888 * 60.00631 * 6 5 3 37 37 H 1.08997 * 109.47582 * 300.00251 * 6 5 3 38 38 H 0.96991 * 120.00048 * 180.02562 * 11 10 8 39 39 H 1.09006 * 109.24375 * 306.15568 * 20 18 16 40 40 H 1.09000 * 109.25338 * 65.56974 * 20 18 16 41 41 H 1.08994 * 109.84228 * 296.90893 * 21 20 18 42 42 H 1.09000 * 109.89534 * 175.97617 * 21 20 18 43 43 H 1.08995 * 110.91143 * 36.86771 * 24 22 21 44 44 H 1.09003 * 110.90470 * 273.26625 * 24 22 21 45 45 H 1.08998 * 109.47121 * 177.02807 * 27 25 24 46 46 H 1.09002 * 109.46785 * 297.01522 * 27 25 24 47 47 H 1.08994 * 109.47597 * 57.01584 * 27 25 24 48 48 H 1.09002 * 110.15419 * 237.22853 * 28 25 24 49 49 H 1.09011 * 110.20894 * 115.51079 * 28 25 24 50 50 H 1.08995 * 109.78457 * 54.84410 * 30 29 28 51 51 H 1.08999 * 109.82781 * 294.05000 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0001 2.7420 0.0011 7 7 5.4631 2.8187 0.0023 8 6 6.1400 2.9838 1.1830 9 1 7.0449 2.4244 1.3695 10 6 5.6619 3.8706 2.1398 11 7 4.7904 4.7945 1.8022 12 14 6.2579 3.7498 3.9060 13 1 7.2297 2.6333 4.0253 14 1 6.9162 5.0231 4.2946 15 1 5.1015 3.4968 4.8025 16 6 6.1436 2.7269 -1.1574 17 8 5.5437 2.6817 -2.2107 18 6 7.6499 2.6807 -1.1457 19 1 7.9854 2.1317 -0.2658 20 6 8.1971 4.1065 -1.0888 21 6 9.7269 4.1051 -1.2213 22 6 10.0756 3.3917 -2.5217 23 1 9.6234 3.8862 -3.3813 24 6 11.5900 3.2056 -2.7258 25 6 11.6420 1.9720 -3.6682 26 1 11.7410 2.2900 -4.7061 27 6 12.8041 1.0554 -3.2807 28 6 10.2908 1.2474 -3.4542 29 7 9.5992 1.9888 -2.3990 30 6 8.1442 1.9616 -2.4102 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 3.9564 0.7806 -0.8892 35 1 3.9557 0.7809 0.8907 36 1 3.6101 3.2359 0.8911 37 1 3.6107 3.2364 -0.8888 38 1 4.4569 5.4138 2.4700 39 1 7.7663 4.6895 -1.9029 40 1 7.9202 4.5600 -0.1371 41 1 10.1708 3.5756 -0.3784 42 1 10.0976 5.1297 -1.2508 43 1 12.0869 2.9933 -1.7792 44 1 12.0281 4.0806 -3.2059 45 1 12.7957 0.1697 -3.9159 46 1 13.7461 1.5877 -3.4122 47 1 12.6985 0.7558 -2.2380 48 1 10.4624 0.2180 -3.1392 49 1 9.7040 1.2658 -4.3726 50 1 7.7946 0.9292 -2.4081 51 1 7.7716 2.4754 -3.2963 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001528657652.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:29:02 Heat of formation + Delta-G solvation = -125.139711 kcal Electronic energy + Delta-G solvation = -30931.282661 eV Core-core repulsion = 26830.205416 eV Total energy + Delta-G solvation = -4101.077245 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.11844 -39.93535 -38.48016 -36.22076 -35.22906 -34.69745 -32.09751 -32.02159 -31.15541 -30.18835 -27.58606 -27.07639 -26.02644 -25.01360 -23.69027 -22.33467 -21.47130 -20.37357 -20.07460 -19.31020 -18.98030 -17.40543 -16.69534 -16.28121 -16.14759 -16.07748 -15.52073 -15.10733 -14.57650 -14.49797 -14.24260 -13.87553 -13.72271 -13.52043 -13.23893 -13.10848 -13.04062 -12.64440 -12.58151 -12.27042 -12.15701 -12.06763 -11.90425 -11.77827 -11.58554 -11.27261 -11.13440 -11.02886 -10.91959 -10.81730 -10.67045 -10.55581 -10.53249 -10.41078 -10.28617 -10.08801 -10.02706 -9.85201 -9.76312 -9.11739 -8.42222 -7.99417 -7.53559 -6.38671 -4.14855 2.65782 3.03810 3.10691 3.22000 3.24725 3.85005 4.05567 4.19559 4.54858 4.76165 4.80394 4.90415 4.96090 5.23196 5.27860 5.29907 5.31531 5.39386 5.42981 5.47238 5.53273 5.58893 5.63080 5.75818 5.78668 5.81982 5.83778 5.88528 5.95057 5.99247 6.00797 6.05579 6.13062 6.25837 6.26422 6.32562 6.34018 6.42149 6.49917 6.54789 6.72383 6.87507 6.93171 6.99683 7.26837 7.29935 7.45026 7.56303 7.92905 8.17236 8.32535 9.05230 9.45297 9.88907 10.64632 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.011275 B = 0.003422 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2482.680919 B = 8180.210555 C = 9871.948011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.367 6.367 3 C 0.466 3.534 4 O -0.505 6.505 5 C -0.126 4.126 6 C 0.135 3.865 7 N -0.438 5.438 8 C -0.345 4.345 9 H 0.092 0.908 10 C 0.048 3.952 11 N -0.855 5.855 12 Si 0.910 3.090 13 H -0.266 1.266 14 H -0.281 1.281 15 H -0.280 1.280 16 C 0.483 3.517 17 O -0.604 6.604 18 C -0.077 4.077 19 H 0.094 0.906 20 C -0.101 4.101 21 C -0.101 4.101 22 C 0.065 3.935 23 H 0.051 0.949 24 C -0.111 4.111 25 C -0.101 4.101 26 H 0.070 0.930 27 C -0.139 4.139 28 C 0.055 3.945 29 N -0.536 5.536 30 C 0.081 3.919 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.107 0.893 37 H 0.063 0.937 38 H 0.270 0.730 39 H 0.051 0.949 40 H 0.084 0.916 41 H 0.073 0.927 42 H 0.062 0.938 43 H 0.077 0.923 44 H 0.065 0.935 45 H 0.051 0.949 46 H 0.052 0.948 47 H 0.060 0.940 48 H 0.075 0.925 49 H 0.034 0.966 50 H 0.068 0.932 51 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.671 -6.654 -4.582 11.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.284 6.284 3 C 0.309 3.691 4 O -0.392 6.392 5 C -0.165 4.165 6 C 0.010 3.990 7 N -0.156 5.156 8 C -0.473 4.473 9 H 0.110 0.890 10 C -0.159 4.159 11 N -0.490 5.490 12 Si 0.736 3.264 13 H -0.190 1.190 14 H -0.206 1.206 15 H -0.206 1.206 16 C 0.272 3.728 17 O -0.489 6.489 18 C -0.099 4.099 19 H 0.112 0.888 20 C -0.139 4.139 21 C -0.138 4.138 22 C -0.043 4.043 23 H 0.069 0.931 24 C -0.149 4.149 25 C -0.120 4.120 26 H 0.088 0.912 27 C -0.197 4.197 28 C -0.074 4.074 29 N -0.261 5.261 30 C -0.047 4.047 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.114 0.886 34 H 0.116 0.884 35 H 0.122 0.878 36 H 0.125 0.875 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.070 0.930 40 H 0.103 0.897 41 H 0.092 0.908 42 H 0.081 0.919 43 H 0.095 0.905 44 H 0.084 0.916 45 H 0.070 0.930 46 H 0.071 0.929 47 H 0.079 0.921 48 H 0.093 0.907 49 H 0.052 0.948 50 H 0.087 0.913 51 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 7.108 -6.452 -4.533 10.616 hybrid contribution -0.436 0.308 0.216 0.576 sum 6.672 -6.144 -4.317 10.045 Atomic orbital electron populations 1.23166 0.77381 1.03021 1.02336 1.86540 1.22739 1.34433 1.84667 1.24083 0.92401 0.80885 0.71742 1.90653 1.67264 1.36230 1.45023 1.21940 0.85868 1.03495 1.05171 1.21029 0.82700 0.90447 1.04789 1.43333 1.04064 1.62707 1.05524 1.19395 1.10894 1.23704 0.93315 0.89043 1.25424 0.96667 0.93575 1.00259 1.69958 1.30080 1.14570 1.34419 0.86151 0.78859 0.78520 0.82887 1.19003 1.20642 1.20609 1.20509 0.89261 0.79364 0.83679 1.90529 1.70958 1.56017 1.31440 1.20959 0.92837 0.97558 0.98537 0.88810 1.21343 0.93844 0.95364 1.03375 1.21483 0.96561 0.99179 0.96613 1.22606 0.94229 0.89701 0.97732 0.93137 1.22478 0.95847 0.96812 0.99765 1.22231 0.94781 0.95820 0.99198 0.91168 1.21795 0.97204 0.98820 1.01832 1.22565 0.93637 0.98258 0.92890 1.62709 1.07984 1.09253 1.46132 1.21718 0.85320 1.00225 0.97485 0.92159 0.92195 0.88623 0.88449 0.87760 0.87505 0.91826 0.91990 0.92983 0.89692 0.90840 0.91944 0.90469 0.91583 0.92959 0.92917 0.92074 0.90672 0.94759 0.91337 0.94100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.44 10.56 101.05 1.07 1.50 16 2 O -0.37 -6.00 10.57 -39.26 -0.41 -6.41 16 3 C 0.47 8.98 7.96 36.01 0.29 9.27 16 4 O -0.50 -11.07 15.73 -18.75 -0.29 -11.36 16 5 C -0.13 -2.49 6.09 -27.88 -0.17 -2.66 16 6 C 0.13 3.21 4.19 -4.04 -0.02 3.19 16 7 N -0.44 -10.54 2.50 -114.81 -0.29 -10.83 16 8 C -0.35 -8.24 7.84 -14.94 -0.12 -8.35 16 9 H 0.09 2.10 6.56 -52.48 -0.34 1.75 16 10 C 0.05 1.16 4.95 -17.47 -0.09 1.08 16 11 N -0.86 -22.36 11.65 55.50 0.65 -21.71 16 12 Si 0.91 18.88 29.59 -169.99 -5.03 13.85 16 13 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 14 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 15 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 16 C 0.48 11.31 6.66 -10.99 -0.07 11.24 16 17 O -0.60 -15.53 15.70 5.54 0.09 -15.44 16 18 C -0.08 -1.52 2.02 -91.53 -0.18 -1.70 16 19 H 0.09 1.86 6.56 -51.93 -0.34 1.52 16 20 C -0.10 -1.87 5.11 -26.53 -0.14 -2.00 16 21 C -0.10 -1.49 5.67 -26.77 -0.15 -1.64 16 22 C 0.07 0.91 2.63 -66.57 -0.18 0.74 16 23 H 0.05 0.75 8.06 -51.93 -0.42 0.33 16 24 C -0.11 -1.24 6.15 -25.01 -0.15 -1.40 16 25 C -0.10 -1.07 3.62 -88.44 -0.32 -1.39 16 26 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 27 C -0.14 -1.25 8.93 37.16 0.33 -0.92 16 28 C 0.05 0.69 6.51 -3.18 -0.02 0.67 16 29 N -0.54 -8.08 4.65 -225.06 -1.05 -9.13 16 30 C 0.08 1.43 4.69 -4.23 -0.02 1.41 16 31 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 32 H 0.06 0.74 8.13 -51.93 -0.42 0.31 16 33 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.10 1.89 8.14 -51.93 -0.42 1.46 16 35 H 0.10 1.92 8.14 -51.93 -0.42 1.50 16 36 H 0.11 2.77 5.77 -51.93 -0.30 2.47 16 37 H 0.06 1.65 7.50 -51.93 -0.39 1.26 16 38 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 39 H 0.05 1.02 8.13 -51.93 -0.42 0.59 16 40 H 0.08 1.74 7.45 -51.93 -0.39 1.35 16 41 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.08 0.86 7.85 -51.93 -0.41 0.46 16 44 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 46 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.07 0.91 7.71 -51.93 -0.40 0.51 16 49 H 0.03 0.44 8.04 -51.92 -0.42 0.02 16 50 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 51 H 0.04 0.79 7.70 -51.93 -0.40 0.39 16 LS Contribution 400.77 15.07 6.04 6.04 Total: -1.00 -29.21 400.77 -9.10 -38.31 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -8.86 Total: 7.66 kcal Atomic # 6 Polarization: 8.97 SS G_CDS: 0.06 Total: 9.03 kcal Atomic # 7 Polarization: -40.98 SS G_CDS: -0.69 Total: -41.67 kcal Atomic # 8 Polarization: -32.59 SS G_CDS: -0.62 Total: -33.22 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.03 Total: 13.85 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -29.21 -9.10 -38.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001528657652.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.833 kcal (2) G-P(sol) polarization free energy of solvation -29.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds