Wall clock time and date at job start Sat Apr 11 2020 05:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34230 * 117.00014 * 2 1 4 4 O 1.20823 * 119.99893 * 359.97438 * 3 2 1 5 5 C 1.50698 * 119.99909 * 179.97438 * 3 2 1 6 6 C 1.53003 * 109.47123 * 179.97438 * 5 3 2 7 7 N 1.46498 * 109.47327 * 179.97438 * 6 5 3 8 8 C 1.37093 * 120.00195 * 264.26604 * 7 6 5 9 9 H 1.07996 * 119.99957 * 137.85309 * 8 7 6 10 10 C 1.38952 * 120.00230 * 317.85397 * 8 7 6 11 11 N 1.31411 * 119.99898 * 341.68664 * 10 8 7 12 12 Si 1.86795 * 120.00303 * 161.67968 * 10 8 7 13 13 H 1.48509 * 109.46697 * 60.00076 * 12 10 8 14 14 H 1.48495 * 109.47642 * 180.02562 * 12 10 8 15 15 H 1.48499 * 109.47395 * 300.00369 * 12 10 8 16 16 C 1.34778 * 119.99699 * 84.26634 * 7 6 5 17 17 O 1.21293 * 120.00029 * 5.66843 * 16 7 6 18 18 C 1.50701 * 119.99985 * 185.66454 * 16 7 6 19 19 H 1.08999 * 109.22469 * 35.90766 * 18 16 7 20 20 C 1.52818 * 109.23143 * 276.49675 * 18 16 7 21 21 C 1.53661 * 110.60853 * 185.97652 * 20 18 16 22 22 C 1.52252 * 107.57569 * 56.12795 * 21 20 18 23 23 H 1.08996 * 110.26653 * 57.41685 * 22 21 20 24 24 C 1.53255 * 113.90671 * 182.74975 * 22 21 20 25 25 C 1.54990 * 104.18554 * 144.42963 * 24 22 21 26 26 H 1.08999 * 110.34556 * 238.63720 * 25 24 22 27 27 C 1.53000 * 110.34865 * 116.36867 * 25 24 22 28 28 C 1.55187 * 104.93377 * 357.50257 * 25 24 22 29 29 N 1.47095 * 103.52303 * 336.00827 * 28 25 24 30 30 C 1.45669 * 116.53805 * 162.42092 * 29 28 25 31 31 H 1.09000 * 109.47340 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47070 * 300.00317 * 1 2 3 33 33 H 1.09001 * 109.47097 * 60.00314 * 1 2 3 34 34 H 1.09000 * 109.47049 * 60.00188 * 5 3 2 35 35 H 1.08994 * 109.47358 * 299.99561 * 5 3 2 36 36 H 1.09005 * 109.47209 * 59.99925 * 6 5 3 37 37 H 1.09000 * 109.47094 * 300.00375 * 6 5 3 38 38 H 0.96994 * 120.00088 * 180.02562 * 11 10 8 39 39 H 1.09001 * 109.24968 * 65.68166 * 20 18 16 40 40 H 1.09000 * 109.24842 * 306.26936 * 20 18 16 41 41 H 1.09002 * 109.83803 * 296.60388 * 21 20 18 42 42 H 1.09005 * 109.83580 * 175.64579 * 21 20 18 43 43 H 1.09004 * 110.48512 * 263.10047 * 24 22 21 44 44 H 1.08999 * 110.49021 * 25.61631 * 24 22 21 45 45 H 1.09000 * 109.47099 * 303.03428 * 27 25 24 46 46 H 1.09000 * 109.47120 * 63.03265 * 27 25 24 47 47 H 1.08996 * 109.46977 * 183.03858 * 27 25 24 48 48 H 1.09004 * 110.61492 * 217.49560 * 28 25 24 49 49 H 1.08996 * 110.61462 * 94.51036 * 28 25 24 50 50 H 1.09004 * 109.79101 * 296.90350 * 30 29 28 51 51 H 1.08995 * 109.79327 * 57.74481 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0001 2.7421 -0.0002 7 7 5.4631 2.8188 0.0010 8 6 6.1405 2.9740 1.1828 9 1 7.0417 2.4082 1.3669 10 6 5.6675 3.8594 2.1436 11 7 4.8095 4.7965 1.8079 12 14 6.2510 3.7175 3.9124 13 1 7.7254 3.8879 3.9623 14 1 5.6023 4.7709 4.7337 15 1 5.8889 2.3804 4.4474 16 6 6.1431 2.7367 -1.1598 17 8 5.5428 2.7029 -2.2132 18 6 7.6493 2.6870 -1.1488 19 1 7.9832 2.1154 -0.2829 20 6 8.1992 4.1097 -1.0553 21 6 9.7298 4.1080 -1.1912 22 6 10.0738 3.4219 -2.5062 23 1 9.5881 3.9333 -3.3372 24 6 11.5789 3.2809 -2.7579 25 6 11.7167 1.9179 -3.4827 26 1 12.3686 1.2521 -2.9171 27 6 12.2607 2.1207 -4.8983 28 6 10.2753 1.3454 -3.5354 29 7 9.5978 2.0159 -2.4151 30 6 8.1413 1.9977 -2.4305 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 3.9564 0.7806 -0.8892 35 1 3.9557 0.7810 0.8908 36 1 3.6100 3.2368 0.8893 37 1 3.6107 3.2356 -0.8906 38 1 4.4796 5.4147 2.4785 39 1 7.9244 4.5386 -0.0916 40 1 7.7682 4.7147 -1.8531 41 1 10.1743 3.5598 -0.3605 42 1 10.1015 5.1327 -1.2003 43 1 11.9365 4.0897 -3.3952 44 1 12.1243 3.2704 -1.8142 45 1 11.6060 2.7990 -5.4454 46 1 13.2625 2.5468 -4.8450 47 1 12.3010 1.1607 -5.4130 48 1 10.2855 0.2656 -3.3867 49 1 9.7959 1.5991 -4.4808 50 1 7.7746 2.5373 -3.3038 51 1 7.7853 0.9679 -2.4558 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001528657657.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:29:08 Heat of formation + Delta-G solvation = -125.190097 kcal Electronic energy + Delta-G solvation = -30920.418980 eV Core-core repulsion = 26819.339550 eV Total energy + Delta-G solvation = -4101.079430 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.12958 -39.95465 -38.48637 -36.22381 -35.23084 -34.70443 -32.11440 -32.02524 -31.14502 -30.18153 -27.58036 -27.05690 -26.05978 -25.01162 -23.69311 -22.29654 -21.54474 -20.29194 -20.06954 -19.46013 -18.92661 -17.39363 -16.69326 -16.25559 -16.15003 -15.90433 -15.48421 -15.07143 -14.87577 -14.58015 -14.28980 -13.80363 -13.62852 -13.51007 -13.39587 -13.16367 -12.92135 -12.54598 -12.48818 -12.31423 -12.15464 -12.08171 -12.02108 -11.78581 -11.65750 -11.27550 -11.17494 -11.02469 -10.85456 -10.79385 -10.71969 -10.55584 -10.47708 -10.39189 -10.27334 -10.10362 -10.04090 -9.87334 -9.76735 -9.10297 -8.42934 -8.09786 -7.53148 -6.38785 -4.15057 2.65418 3.03587 3.12949 3.21590 3.22388 3.84849 4.05929 4.19406 4.55453 4.75992 4.79719 4.92778 5.03960 5.18715 5.23081 5.29728 5.30032 5.36338 5.43592 5.47243 5.58314 5.60824 5.63077 5.69550 5.75310 5.78389 5.80378 5.89704 5.91047 5.99380 6.01129 6.03866 6.13720 6.25328 6.26655 6.32023 6.33402 6.41168 6.49734 6.54599 6.72065 6.86844 6.92759 7.00095 7.20484 7.28872 7.44212 7.50873 7.93203 8.16893 8.32131 9.05152 9.45111 9.88918 10.64613 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.011376 B = 0.003415 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2460.741119 B = 8197.076251 C =10011.169817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.366 6.366 3 C 0.466 3.534 4 O -0.505 6.505 5 C -0.126 4.126 6 C 0.135 3.865 7 N -0.438 5.438 8 C -0.348 4.348 9 H 0.091 0.909 10 C 0.049 3.951 11 N -0.854 5.854 12 Si 0.910 3.090 13 H -0.270 1.270 14 H -0.284 1.284 15 H -0.272 1.272 16 C 0.484 3.516 17 O -0.604 6.604 18 C -0.077 4.077 19 H 0.094 0.906 20 C -0.101 4.101 21 C -0.101 4.101 22 C 0.061 3.939 23 H 0.048 0.952 24 C -0.112 4.112 25 C -0.095 4.095 26 H 0.077 0.923 27 C -0.144 4.144 28 C 0.047 3.953 29 N -0.524 5.524 30 C 0.075 3.925 31 H 0.095 0.905 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.064 0.936 38 H 0.271 0.729 39 H 0.086 0.914 40 H 0.051 0.949 41 H 0.073 0.927 42 H 0.062 0.938 43 H 0.065 0.935 44 H 0.072 0.928 45 H 0.053 0.947 46 H 0.055 0.945 47 H 0.054 0.946 48 H 0.076 0.924 49 H 0.038 0.962 50 H 0.042 0.958 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.457 -6.353 -5.064 11.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.284 6.284 3 C 0.309 3.691 4 O -0.392 6.392 5 C -0.165 4.165 6 C 0.011 3.989 7 N -0.156 5.156 8 C -0.476 4.476 9 H 0.108 0.892 10 C -0.158 4.158 11 N -0.489 5.489 12 Si 0.736 3.264 13 H -0.195 1.195 14 H -0.210 1.210 15 H -0.198 1.198 16 C 0.272 3.728 17 O -0.489 6.489 18 C -0.099 4.099 19 H 0.112 0.888 20 C -0.139 4.139 21 C -0.139 4.139 22 C -0.047 4.047 23 H 0.066 0.934 24 C -0.150 4.150 25 C -0.114 4.114 26 H 0.096 0.904 27 C -0.201 4.201 28 C -0.081 4.081 29 N -0.248 5.248 30 C -0.053 4.053 31 H 0.114 0.886 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.115 0.885 35 H 0.123 0.877 36 H 0.124 0.876 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.104 0.896 40 H 0.070 0.930 41 H 0.091 0.909 42 H 0.081 0.919 43 H 0.084 0.916 44 H 0.091 0.909 45 H 0.072 0.928 46 H 0.074 0.926 47 H 0.073 0.927 48 H 0.094 0.906 49 H 0.056 0.944 50 H 0.060 0.940 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.893 -6.159 -4.997 10.508 hybrid contribution -0.430 0.332 0.274 0.609 sum 6.463 -5.827 -4.723 9.901 Atomic orbital electron populations 1.23167 0.77376 1.03025 1.02335 1.86540 1.22745 1.34427 1.84662 1.24082 0.92399 0.80887 0.71735 1.90653 1.67267 1.36230 1.45038 1.21940 0.85868 1.03481 1.05184 1.21021 0.82738 0.90464 1.04715 1.43309 1.04030 1.62835 1.05408 1.19299 1.11308 1.23749 0.93197 0.89158 1.25421 0.96658 0.93497 1.00247 1.69948 1.30472 1.13947 1.34568 0.86272 0.79243 0.78175 0.82662 1.19537 1.20988 1.19776 1.20507 0.89250 0.79307 0.83709 1.90527 1.70926 1.55998 1.31486 1.20947 0.92885 0.97746 0.98302 0.88834 1.21372 0.93750 0.95322 1.03505 1.21506 0.96606 0.99344 0.96474 1.22456 0.94436 0.89962 0.97851 0.93429 1.22248 0.95803 0.96410 1.00509 1.22126 0.96151 0.97060 0.96045 0.90429 1.21854 1.00699 1.01485 0.96087 1.22882 0.93530 0.99180 0.92541 1.63859 1.08154 1.10843 1.41980 1.21798 0.85642 1.00403 0.97482 0.88619 0.92157 0.92192 0.88456 0.87733 0.87636 0.91786 0.91877 0.89561 0.92995 0.90869 0.91939 0.91612 0.90940 0.92776 0.92614 0.92735 0.90590 0.94368 0.94014 0.91213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.44 10.56 101.05 1.07 1.50 16 2 O -0.37 -5.99 10.57 -39.26 -0.41 -6.41 16 3 C 0.47 8.97 7.96 36.00 0.29 9.26 16 4 O -0.51 -11.05 15.73 -18.75 -0.29 -11.34 16 5 C -0.13 -2.49 6.09 -27.88 -0.17 -2.66 16 6 C 0.13 3.21 4.20 -4.04 -0.02 3.19 16 7 N -0.44 -10.53 2.50 -114.81 -0.29 -10.82 16 8 C -0.35 -8.30 7.74 -14.93 -0.12 -8.41 16 9 H 0.09 2.06 6.60 -52.49 -0.35 1.72 16 10 C 0.05 1.19 4.93 -17.47 -0.09 1.11 16 11 N -0.85 -22.33 11.71 55.50 0.65 -21.68 16 12 Si 0.91 18.88 29.59 -169.99 -5.03 13.85 16 13 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 14 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 15 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 16 C 0.48 11.33 6.68 -10.98 -0.07 11.26 16 17 O -0.60 -15.54 15.68 5.55 0.09 -15.45 16 18 C -0.08 -1.52 2.01 -91.54 -0.18 -1.70 16 19 H 0.09 1.86 6.62 -51.93 -0.34 1.51 16 20 C -0.10 -1.89 5.12 -26.48 -0.14 -2.02 16 21 C -0.10 -1.52 5.64 -26.77 -0.15 -1.67 16 22 C 0.06 0.86 2.50 -66.95 -0.17 0.69 16 23 H 0.05 0.72 7.97 -51.93 -0.41 0.31 16 24 C -0.11 -1.26 6.29 -25.55 -0.16 -1.42 16 25 C -0.09 -1.00 3.69 -88.41 -0.33 -1.33 16 26 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 27 C -0.14 -1.26 8.94 37.16 0.33 -0.93 16 28 C 0.05 0.59 6.24 -2.56 -0.02 0.57 16 29 N -0.52 -7.94 4.84 -224.50 -1.09 -9.03 16 30 C 0.08 1.33 4.70 -4.17 -0.02 1.31 16 31 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 33 H 0.06 0.74 8.13 -51.93 -0.42 0.31 16 34 H 0.10 1.88 8.14 -51.93 -0.42 1.46 16 35 H 0.10 1.93 8.14 -51.93 -0.42 1.51 16 36 H 0.11 2.73 5.81 -51.93 -0.30 2.43 16 37 H 0.06 1.66 7.48 -51.93 -0.39 1.27 16 38 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 39 H 0.09 1.78 7.37 -51.93 -0.38 1.39 16 40 H 0.05 1.02 8.13 -51.93 -0.42 0.60 16 41 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.07 0.66 7.73 -51.93 -0.40 0.26 16 44 H 0.07 0.80 8.00 -51.93 -0.42 0.38 16 45 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 46 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 49 H 0.04 0.49 7.88 -51.93 -0.41 0.08 16 50 H 0.04 0.81 7.64 -51.93 -0.40 0.41 16 51 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 400.59 15.07 6.04 6.04 Total: -1.00 -29.16 400.59 -9.13 -38.29 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -8.85 Total: 7.79 kcal Atomic # 6 Polarization: 8.70 SS G_CDS: 0.06 Total: 8.76 kcal Atomic # 7 Polarization: -40.80 SS G_CDS: -0.72 Total: -41.53 kcal Atomic # 8 Polarization: -32.58 SS G_CDS: -0.62 Total: -33.20 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.03 Total: 13.85 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -29.16 -9.13 -38.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001528657657.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.899 kcal (2) G-P(sol) polarization free energy of solvation -29.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds