Wall clock time and date at job start Sat Apr 11 2020 05:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34230 * 117.00014 * 2 1 4 4 O 1.20823 * 119.99893 * 359.97438 * 3 2 1 5 5 C 1.50698 * 119.99909 * 179.97438 * 3 2 1 6 6 C 1.53003 * 109.47123 * 179.97438 * 5 3 2 7 7 N 1.46498 * 109.47327 * 179.97438 * 6 5 3 8 8 C 1.37093 * 120.00195 * 264.26604 * 7 6 5 9 9 H 1.07996 * 119.99957 * 137.85309 * 8 7 6 10 10 C 1.38952 * 120.00230 * 317.85397 * 8 7 6 11 11 N 1.31411 * 119.99898 * 341.68664 * 10 8 7 12 12 Si 1.86795 * 120.00303 * 161.67968 * 10 8 7 13 13 H 1.48509 * 109.46697 * 60.00076 * 12 10 8 14 14 H 1.48495 * 109.47642 * 180.02562 * 12 10 8 15 15 H 1.48499 * 109.47395 * 300.00369 * 12 10 8 16 16 C 1.34778 * 119.99699 * 84.26634 * 7 6 5 17 17 O 1.21293 * 120.00029 * 5.66843 * 16 7 6 18 18 C 1.50701 * 119.99985 * 185.66454 * 16 7 6 19 19 H 1.08999 * 109.22469 * 35.90766 * 18 16 7 20 20 C 1.52818 * 109.23143 * 276.49675 * 18 16 7 21 21 C 1.53661 * 110.60853 * 185.97652 * 20 18 16 22 22 C 1.52252 * 107.57569 * 56.12795 * 21 20 18 23 23 H 1.08996 * 110.26653 * 57.41685 * 22 21 20 24 24 C 1.53255 * 113.90671 * 182.74975 * 22 21 20 25 25 C 1.54990 * 104.18554 * 144.42963 * 24 22 21 26 26 H 1.08999 * 110.34556 * 238.63720 * 25 24 22 27 27 C 1.53000 * 110.34865 * 116.36867 * 25 24 22 28 28 C 1.55187 * 104.93377 * 357.50257 * 25 24 22 29 29 N 1.47095 * 103.52303 * 336.00827 * 28 25 24 30 30 C 1.45669 * 116.53805 * 162.42092 * 29 28 25 31 31 H 1.09000 * 109.47340 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47070 * 300.00317 * 1 2 3 33 33 H 1.09001 * 109.47097 * 60.00314 * 1 2 3 34 34 H 1.09000 * 109.47049 * 60.00188 * 5 3 2 35 35 H 1.08994 * 109.47358 * 299.99561 * 5 3 2 36 36 H 1.09005 * 109.47209 * 59.99925 * 6 5 3 37 37 H 1.09000 * 109.47094 * 300.00375 * 6 5 3 38 38 H 0.96994 * 120.00088 * 180.02562 * 11 10 8 39 39 H 1.09001 * 109.24968 * 65.68166 * 20 18 16 40 40 H 1.09000 * 109.24842 * 306.26936 * 20 18 16 41 41 H 1.09002 * 109.83803 * 296.60388 * 21 20 18 42 42 H 1.09005 * 109.83580 * 175.64579 * 21 20 18 43 43 H 1.09004 * 110.48512 * 263.10047 * 24 22 21 44 44 H 1.08999 * 110.49021 * 25.61631 * 24 22 21 45 45 H 1.09000 * 109.47099 * 303.03428 * 27 25 24 46 46 H 1.09000 * 109.47120 * 63.03265 * 27 25 24 47 47 H 1.08996 * 109.46977 * 183.03858 * 27 25 24 48 48 H 1.09004 * 110.61492 * 217.49560 * 28 25 24 49 49 H 1.08996 * 110.61462 * 94.51036 * 28 25 24 50 50 H 1.09004 * 109.79101 * 296.90350 * 30 29 28 51 51 H 1.08995 * 109.79327 * 57.74481 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0001 2.7421 -0.0002 7 7 5.4631 2.8188 0.0010 8 6 6.1405 2.9740 1.1828 9 1 7.0417 2.4082 1.3669 10 6 5.6675 3.8594 2.1436 11 7 4.8095 4.7965 1.8079 12 14 6.2510 3.7175 3.9124 13 1 7.7254 3.8879 3.9623 14 1 5.6023 4.7709 4.7337 15 1 5.8889 2.3804 4.4474 16 6 6.1431 2.7367 -1.1598 17 8 5.5428 2.7029 -2.2132 18 6 7.6493 2.6870 -1.1488 19 1 7.9832 2.1154 -0.2829 20 6 8.1992 4.1097 -1.0553 21 6 9.7298 4.1080 -1.1912 22 6 10.0738 3.4219 -2.5062 23 1 9.5881 3.9333 -3.3372 24 6 11.5789 3.2809 -2.7579 25 6 11.7167 1.9179 -3.4827 26 1 12.3686 1.2521 -2.9171 27 6 12.2607 2.1207 -4.8983 28 6 10.2753 1.3454 -3.5354 29 7 9.5978 2.0159 -2.4151 30 6 8.1413 1.9977 -2.4305 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 3.9564 0.7806 -0.8892 35 1 3.9557 0.7810 0.8908 36 1 3.6100 3.2368 0.8893 37 1 3.6107 3.2356 -0.8906 38 1 4.4796 5.4147 2.4785 39 1 7.9244 4.5386 -0.0916 40 1 7.7682 4.7147 -1.8531 41 1 10.1743 3.5598 -0.3605 42 1 10.1015 5.1327 -1.2003 43 1 11.9365 4.0897 -3.3952 44 1 12.1243 3.2704 -1.8142 45 1 11.6060 2.7990 -5.4454 46 1 13.2625 2.5468 -4.8450 47 1 12.3010 1.1607 -5.4130 48 1 10.2855 0.2656 -3.3867 49 1 9.7959 1.5991 -4.4808 50 1 7.7746 2.5373 -3.3038 51 1 7.7853 0.9679 -2.4558 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001528657657.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:29:07 Heat of formation + Delta-G solvation = -141.675145 kcal Electronic energy + Delta-G solvation = -30921.133825 eV Core-core repulsion = 26819.339550 eV Total energy + Delta-G solvation = -4101.794275 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.65305 -41.32421 -40.10504 -37.70945 -36.88899 -36.21469 -33.87337 -33.32498 -32.71187 -31.58143 -28.79457 -28.24697 -27.14611 -26.87010 -25.24907 -23.61628 -22.94446 -21.77331 -21.12330 -20.99759 -20.49418 -18.99513 -18.37379 -17.86752 -17.64539 -17.52310 -16.57988 -16.42703 -16.30221 -16.09012 -15.93177 -15.28174 -15.17896 -14.89371 -14.74026 -14.51194 -14.19977 -13.89631 -13.78441 -13.72482 -13.44302 -13.31708 -13.22794 -13.12826 -13.07092 -12.92037 -12.73882 -12.66637 -12.31418 -12.12607 -12.01924 -11.95123 -11.82835 -11.66536 -11.64438 -11.59036 -11.35608 -11.28636 -11.13024 -10.96329 -10.29378 -9.47132 -9.36085 -8.27584 -6.09801 1.09583 1.46993 1.52113 1.59572 1.62960 2.01030 2.36070 2.77524 3.06129 3.24610 3.60794 3.74328 3.80009 3.99067 4.04888 4.06124 4.11509 4.15344 4.25658 4.29152 4.29689 4.39031 4.41734 4.53325 4.54755 4.55710 4.65003 4.67390 4.71696 4.74971 4.81447 4.83637 4.92529 4.98378 5.01494 5.08993 5.11657 5.16874 5.22390 5.28407 5.35115 5.36492 5.41189 5.48380 5.50833 5.54526 6.01690 6.04905 6.24715 6.40088 6.66725 7.14398 7.55274 7.99359 8.76771 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.011376 B = 0.003415 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2460.741119 B = 8197.076251 C =10011.169817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.361 6.361 3 C 0.473 3.527 4 O -0.538 6.538 5 C -0.115 4.115 6 C 0.142 3.858 7 N -0.446 5.446 8 C -0.351 4.351 9 H 0.104 0.896 10 C 0.008 3.992 11 N -0.895 5.895 12 Si 0.977 3.023 13 H -0.258 1.258 14 H -0.291 1.291 15 H -0.264 1.264 16 C 0.472 3.528 17 O -0.634 6.634 18 C -0.068 4.068 19 H 0.096 0.904 20 C -0.095 4.095 21 C -0.092 4.092 22 C 0.059 3.941 23 H 0.034 0.966 24 C -0.105 4.105 25 C -0.088 4.088 26 H 0.089 0.911 27 C -0.140 4.140 28 C 0.042 3.958 29 N -0.527 5.527 30 C 0.088 3.912 31 H 0.139 0.861 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.102 0.898 35 H 0.122 0.878 36 H 0.084 0.916 37 H 0.029 0.971 38 H 0.269 0.731 39 H 0.062 0.938 40 H 0.031 0.969 41 H 0.079 0.921 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.046 0.954 46 H 0.070 0.930 47 H 0.061 0.939 48 H 0.084 0.916 49 H 0.033 0.967 50 H 0.019 0.981 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.878 -8.066 -4.436 13.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.278 6.278 3 C 0.318 3.682 4 O -0.428 6.428 5 C -0.154 4.154 6 C 0.017 3.983 7 N -0.164 5.164 8 C -0.478 4.478 9 H 0.121 0.879 10 C -0.196 4.196 11 N -0.532 5.532 12 Si 0.800 3.200 13 H -0.182 1.182 14 H -0.217 1.217 15 H -0.189 1.189 16 C 0.262 3.738 17 O -0.522 6.522 18 C -0.090 4.090 19 H 0.114 0.886 20 C -0.133 4.133 21 C -0.129 4.129 22 C -0.049 4.049 23 H 0.052 0.948 24 C -0.143 4.143 25 C -0.107 4.107 26 H 0.107 0.893 27 C -0.197 4.197 28 C -0.086 4.086 29 N -0.251 5.251 30 C -0.041 4.041 31 H 0.157 0.843 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.120 0.880 35 H 0.140 0.860 36 H 0.102 0.898 37 H 0.048 0.952 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.050 0.950 41 H 0.098 0.902 42 H 0.100 0.900 43 H 0.100 0.900 44 H 0.100 0.900 45 H 0.065 0.935 46 H 0.089 0.911 47 H 0.081 0.919 48 H 0.102 0.898 49 H 0.051 0.949 50 H 0.037 0.963 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 9.332 -7.910 -4.372 12.991 hybrid contribution -1.294 0.845 0.017 1.546 sum 8.038 -7.065 -4.355 11.554 Atomic orbital electron populations 1.23590 0.74737 1.05923 1.02439 1.86507 1.25184 1.32263 1.83829 1.23820 0.92087 0.81300 0.71034 1.90645 1.67853 1.37530 1.46750 1.21687 0.86901 1.00580 1.06194 1.20763 0.82918 0.92775 1.01835 1.43541 1.04143 1.62750 1.05952 1.19622 1.11622 1.23653 0.92935 0.87892 1.26250 0.96548 0.92783 1.03985 1.70087 1.32234 1.15092 1.35742 0.85236 0.79219 0.78055 0.77456 1.18192 1.21717 1.18868 1.21237 0.90958 0.78545 0.83070 1.90494 1.71950 1.57350 1.32441 1.20900 0.90019 0.98632 0.99436 0.88620 1.21294 0.96737 0.94016 1.01271 1.21457 0.93252 1.00912 0.97309 1.22514 0.96639 0.89064 0.96726 0.94801 1.22247 0.93146 0.97433 1.01485 1.22124 0.94685 0.96570 0.97311 0.89306 1.21827 1.01207 1.01948 0.94763 1.23038 0.94634 0.99605 0.91336 1.63884 1.06061 1.11834 1.43356 1.21545 0.87714 0.99472 0.95361 0.84298 0.92047 0.92229 0.87963 0.86018 0.89819 0.95194 0.92125 0.91923 0.95040 0.90221 0.89978 0.90018 0.90010 0.93460 0.91082 0.91947 0.89796 0.94851 0.96273 0.91456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 10.56 113.37 1.20 1.80 16 2 O -0.36 -11.42 10.57 -51.41 -0.54 -11.96 16 3 C 0.47 18.44 7.96 71.24 0.57 19.01 16 4 O -0.54 -24.29 15.73 21.97 0.35 -23.95 16 5 C -0.11 -4.64 6.09 29.85 0.18 -4.45 16 6 C 0.14 7.08 4.20 86.38 0.36 7.44 16 7 N -0.45 -22.26 2.50 -635.53 -1.59 -23.84 16 8 C -0.35 -16.95 7.74 84.04 0.65 -16.30 16 9 H 0.10 4.64 6.60 -2.91 -0.02 4.62 16 10 C 0.01 0.39 4.93 84.93 0.42 0.81 16 11 N -0.90 -48.43 11.71 21.66 0.25 -48.18 16 12 Si 0.98 38.46 29.59 68.60 2.03 40.49 16 13 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16 14 H -0.29 -11.73 7.11 99.48 0.71 -11.02 16 15 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 16 C 0.47 23.03 6.68 87.66 0.59 23.62 16 17 O -0.63 -34.34 15.68 -3.07 -0.05 -34.39 16 18 C -0.07 -2.75 2.01 -11.39 -0.02 -2.77 16 19 H 0.10 3.79 6.62 -2.39 -0.02 3.77 16 20 C -0.09 -3.61 5.12 30.76 0.16 -3.45 16 21 C -0.09 -2.63 5.64 30.57 0.17 -2.45 16 22 C 0.06 1.57 2.50 44.40 0.11 1.68 16 23 H 0.03 1.01 7.97 -2.39 -0.02 0.99 16 24 C -0.11 -2.05 6.29 31.36 0.20 -1.86 16 25 C -0.09 -1.59 3.69 -9.36 -0.03 -1.63 16 26 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 27 C -0.14 -2.03 8.94 71.98 0.64 -1.39 16 28 C 0.04 0.98 6.24 87.02 0.54 1.52 16 29 N -0.53 -15.40 4.84 -864.20 -4.18 -19.58 16 30 C 0.09 3.17 4.70 86.74 0.41 3.58 16 31 H 0.14 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.06 1.43 8.13 -2.39 -0.02 1.41 16 33 H 0.06 1.40 8.13 -2.39 -0.02 1.38 16 34 H 0.10 4.03 8.14 -2.39 -0.02 4.01 16 35 H 0.12 4.47 8.14 -2.39 -0.02 4.45 16 36 H 0.08 4.56 5.81 -2.38 -0.01 4.54 16 37 H 0.03 1.65 7.48 -2.39 -0.02 1.64 16 38 H 0.27 13.96 8.31 -92.71 -0.77 13.19 16 39 H 0.06 2.65 7.37 -2.39 -0.02 2.64 16 40 H 0.03 1.29 8.13 -2.39 -0.02 1.27 16 41 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 42 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 43 H 0.08 1.37 7.73 -2.39 -0.02 1.35 16 44 H 0.08 1.49 8.00 -2.39 -0.02 1.47 16 45 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 46 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 47 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 48 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 49 H 0.03 0.82 7.88 -2.39 -0.02 0.80 16 50 H 0.02 0.77 7.64 -2.38 -0.02 0.75 16 51 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 Total: -1.00 -66.22 400.59 3.31 -62.92 By element: Atomic # 1 Polarization: 32.43 SS G_CDS: 0.90 Total: 33.33 kcal Atomic # 6 Polarization: 19.02 SS G_CDS: 6.14 Total: 25.16 kcal Atomic # 7 Polarization: -86.08 SS G_CDS: -5.52 Total: -91.60 kcal Atomic # 8 Polarization: -70.05 SS G_CDS: -0.25 Total: -70.30 kcal Atomic # 14 Polarization: 38.46 SS G_CDS: 2.03 Total: 40.49 kcal Total: -66.22 3.31 -62.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001528657657.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.758 kcal (2) G-P(sol) polarization free energy of solvation -66.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds