Wall clock time and date at job start Sat Apr 11 2020 05:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08991 * 109.74899 * 2 1 4 4 C 1.53373 * 109.60980 * 239.57029 * 2 1 3 5 5 N 1.46964 * 108.63629 * 190.83150 * 4 2 1 6 6 C 1.34771 * 120.59283 * 235.20515 * 5 4 2 7 7 O 1.21282 * 119.99519 * 185.50104 * 6 5 4 8 8 C 1.50695 * 120.00202 * 5.49988 * 6 5 4 9 9 H 1.08995 * 109.47158 * 44.36117 * 8 6 5 10 10 C 1.53003 * 109.47079 * 284.36208 * 8 6 5 11 11 C 1.53006 * 109.46944 * 180.02562 * 10 8 6 12 12 C 1.52998 * 109.47178 * 60.00043 * 11 10 8 13 13 C 1.53003 * 109.47148 * 299.99832 * 12 11 10 14 14 H 1.08995 * 109.47051 * 300.00240 * 13 12 11 15 15 C 1.50696 * 109.47164 * 180.02562 * 13 12 11 16 16 O 1.20823 * 119.99999 * 239.99921 * 15 13 12 17 17 O 1.34231 * 119.99819 * 59.99930 * 15 13 12 18 18 C 1.52994 * 109.47179 * 60.00137 * 13 12 11 19 19 C 1.46966 * 118.80844 * 55.48039 * 5 4 2 20 20 C 1.53809 * 108.40286 * 304.48255 * 19 5 4 21 21 H 1.08988 * 109.53617 * 169.30065 * 20 19 5 22 22 C 1.53005 * 109.73952 * 289.85251 * 20 19 5 23 23 N 1.46961 * 109.60731 * 120.42932 * 2 1 3 24 24 C 1.36938 * 120.59863 * 354.99242 * 23 2 1 25 25 H 1.08001 * 119.99656 * 29.08463 * 24 23 2 26 26 C 1.38813 * 119.99903 * 209.09445 * 24 23 2 27 27 N 1.31611 * 120.00558 * 17.69393 * 26 24 23 28 28 Si 1.86806 * 119.99750 * 197.69345 * 26 24 23 29 29 H 1.48504 * 109.47100 * 59.99949 * 28 26 24 30 30 H 1.48500 * 109.47253 * 179.97438 * 28 26 24 31 31 H 1.48503 * 109.47003 * 300.00003 * 28 26 24 32 32 H 1.08998 * 109.47407 * 180.42538 * 1 2 3 33 33 H 1.09002 * 109.46883 * 300.42759 * 1 2 3 34 34 H 1.08995 * 109.47138 * 60.42357 * 1 2 3 35 35 H 1.09004 * 109.60513 * 71.09017 * 4 2 1 36 36 H 1.09001 * 109.75165 * 310.66385 * 4 2 1 37 37 H 1.09003 * 109.46753 * 299.99404 * 10 8 6 38 38 H 1.08999 * 109.47171 * 60.00077 * 10 8 6 39 39 H 1.08995 * 109.47069 * 299.99772 * 11 10 8 40 40 H 1.09000 * 109.46897 * 179.97438 * 11 10 8 41 41 H 1.09001 * 109.47206 * 179.97438 * 12 11 10 42 42 H 1.08995 * 109.47341 * 59.99896 * 12 11 10 43 43 H 0.96708 * 116.99581 * 179.97438 * 17 15 13 44 44 H 1.09004 * 109.47161 * 59.99810 * 18 13 12 45 45 H 1.08994 * 109.47512 * 180.02562 * 18 13 12 46 46 H 1.09003 * 109.60754 * 64.26989 * 19 5 4 47 47 H 1.08999 * 109.60731 * 184.77520 * 19 5 4 48 48 H 1.09006 * 109.46866 * 172.72952 * 22 20 19 49 49 H 1.09001 * 109.46617 * 292.72550 * 22 20 19 50 50 H 1.08998 * 109.47216 * 52.72848 * 22 20 19 51 51 H 0.96995 * 120.00537 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8983 1.0258 0.0000 4 6 2.0447 -0.7317 -1.2458 5 7 3.4908 -0.9490 -1.0989 6 6 4.3491 -0.5134 -2.0422 7 8 5.5284 -0.7848 -1.9607 8 6 3.8437 0.3107 -3.1982 9 1 3.1511 1.0673 -2.8296 10 6 3.1225 -0.5982 -4.1956 11 6 2.6098 0.2385 -5.3696 12 6 3.7903 0.9214 -6.0631 13 6 4.5115 1.8303 -5.0656 14 1 3.8190 2.5872 -4.6973 15 6 5.6738 2.5034 -5.7488 16 8 6.7974 2.3316 -5.3391 17 8 5.4609 3.2939 -6.8126 18 6 5.0241 0.9937 -3.8917 19 6 3.9835 -1.6550 0.0922 20 6 3.4693 -0.9185 1.3407 21 1 3.6600 -1.5249 2.2260 22 6 4.1801 0.4298 1.4746 23 7 2.0232 -0.7012 1.1937 24 6 1.1510 -1.1446 2.1517 25 1 0.1431 -1.4202 1.8784 26 6 1.5622 -1.2396 3.4742 27 7 2.6372 -0.5961 3.8770 28 14 0.5896 -2.2811 4.6821 29 1 0.5636 -3.6897 4.2123 30 1 1.2319 -2.2177 6.0195 31 1 -0.7996 -1.7645 4.7746 32 1 -0.3634 -1.0276 0.0076 33 1 -0.3633 0.5205 0.8862 34 1 -0.3633 0.5072 -0.8937 35 1 1.8540 -0.1252 -2.1311 36 1 1.5387 -1.6921 -1.3443 37 1 3.8152 -1.3548 -4.5643 38 1 2.2818 -1.0851 -3.7014 39 1 1.9174 0.9954 -5.0013 40 1 2.0965 -0.4091 -6.0804 41 1 3.4251 1.5171 -6.8997 42 1 4.4828 0.1645 -6.4314 43 1 6.2375 3.7042 -7.2171 44 1 5.7166 0.2368 -4.2600 45 1 5.5375 1.6412 -3.1809 46 1 3.6120 -2.6798 0.0897 47 1 5.0735 -1.6585 0.0906 48 1 3.7238 1.0024 2.2822 49 1 5.2342 0.2642 1.6973 50 1 4.0887 0.9832 0.5401 51 1 2.9247 -0.6628 4.8010 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604771235.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:29:19 Heat of formation + Delta-G solvation = -116.989817 kcal Electronic energy + Delta-G solvation = -31756.966387 eV Core-core repulsion = 27656.242548 eV Total energy + Delta-G solvation = -4100.723839 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.92082 -39.97549 -38.01718 -36.99070 -36.31390 -34.06520 -32.81290 -31.89843 -31.17739 -30.83741 -27.93646 -26.38086 -25.73933 -24.77286 -23.79682 -23.12016 -21.54653 -20.91453 -20.17459 -19.40817 -18.55161 -18.11361 -17.19432 -16.63753 -16.05983 -15.87830 -15.32755 -15.25869 -15.09916 -14.62715 -14.19749 -14.00570 -13.82615 -13.73692 -13.55116 -13.21660 -12.97245 -12.80775 -12.64547 -12.25006 -11.98708 -11.83825 -11.74749 -11.64696 -11.58132 -11.28693 -11.20228 -11.00322 -10.98252 -10.89763 -10.76100 -10.65375 -10.64571 -10.58902 -10.35481 -10.14592 -10.07068 -9.71491 -9.65636 -9.15195 -8.51834 -8.13498 -6.65672 -5.82540 -3.27272 1.99590 2.74643 3.01876 3.34868 3.41561 3.42359 3.48800 4.31640 4.41846 4.44894 4.52236 4.79517 4.90456 4.99271 5.07451 5.09286 5.15024 5.23805 5.32775 5.33592 5.42693 5.62141 5.64350 5.68515 5.74282 5.77037 5.85167 5.93386 5.95711 6.06553 6.11686 6.14882 6.21179 6.21786 6.27057 6.32128 6.36530 6.48883 6.62266 6.77983 6.88889 6.91020 7.01453 7.07038 7.57660 7.64562 7.67105 7.78549 7.97185 8.39859 8.61725 9.15892 9.78288 10.35317 11.24268 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.022284 B = 0.002937 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.204247 B = 9530.803091 C =10030.698398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.154 3.846 3 H 0.030 0.970 4 C 0.091 3.909 5 N -0.593 5.593 6 C 0.514 3.486 7 O -0.552 6.552 8 C -0.104 4.104 9 H 0.095 0.905 10 C -0.116 4.116 11 C -0.115 4.115 12 C -0.111 4.111 13 C -0.078 4.078 14 H 0.111 0.889 15 C 0.481 3.519 16 O -0.508 6.508 17 O -0.518 6.518 18 C -0.084 4.084 19 C 0.092 3.908 20 C 0.181 3.819 21 H 0.104 0.896 22 C -0.136 4.136 23 N -0.580 5.580 24 C -0.256 4.256 25 H 0.071 0.929 26 C 0.006 3.994 27 N -0.895 5.895 28 Si 0.899 3.101 29 H -0.285 1.285 30 H -0.291 1.291 31 H -0.284 1.284 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.040 0.960 35 H 0.075 0.925 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.069 0.931 43 H 0.408 0.592 44 H 0.083 0.917 45 H 0.076 0.924 46 H 0.058 0.942 47 H 0.079 0.921 48 H 0.073 0.927 49 H 0.029 0.971 50 H 0.020 0.980 51 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.120 4.461 -19.956 20.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.046 3.954 3 H 0.048 0.952 4 C -0.034 4.034 5 N -0.324 5.324 6 C 0.301 3.699 7 O -0.431 6.431 8 C -0.126 4.126 9 H 0.113 0.887 10 C -0.154 4.154 11 C -0.152 4.152 12 C -0.148 4.148 13 C -0.097 4.097 14 H 0.129 0.871 15 C 0.323 3.677 16 O -0.395 6.395 17 O -0.330 6.330 18 C -0.122 4.122 19 C -0.031 4.031 20 C 0.073 3.927 21 H 0.122 0.878 22 C -0.195 4.195 23 N -0.303 5.303 24 C -0.385 4.385 25 H 0.088 0.912 26 C -0.193 4.193 27 N -0.539 5.539 28 Si 0.729 3.271 29 H -0.211 1.211 30 H -0.217 1.217 31 H -0.210 1.210 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.059 0.941 35 H 0.093 0.907 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.096 0.904 42 H 0.088 0.912 43 H 0.266 0.734 44 H 0.101 0.899 45 H 0.095 0.905 46 H 0.076 0.924 47 H 0.098 0.902 48 H 0.092 0.908 49 H 0.048 0.952 50 H 0.039 0.961 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -0.473 4.080 -19.404 19.834 hybrid contribution 0.069 -0.126 0.559 0.578 sum -0.404 3.954 -18.844 19.259 Atomic orbital electron populations 1.21765 0.95292 1.01711 1.00565 1.20778 0.93200 0.93978 0.87434 0.95206 1.22529 0.80227 1.00852 0.99799 1.47985 1.07008 1.56260 1.21133 1.20369 0.86104 0.80226 0.83167 1.90661 1.16763 1.58593 1.77045 1.21274 0.98463 0.98282 0.94555 0.88650 1.21650 1.00420 0.97842 0.95494 1.21525 0.97058 0.99385 0.97233 1.21555 0.97720 0.98393 0.97171 1.21102 0.93901 0.98395 0.96340 0.87139 1.23564 0.90816 0.75817 0.77532 1.90758 1.25635 1.59688 1.63453 1.84540 1.44170 1.59935 1.44387 1.21231 0.96743 0.99123 0.95085 1.22570 0.99478 0.95429 0.85645 1.20799 0.82864 0.94827 0.94164 0.87847 1.21945 0.98153 0.99506 0.99896 1.44145 1.01909 1.64485 1.19791 1.19103 0.95742 1.37250 0.86452 0.91184 1.25057 0.98156 0.99284 0.96801 1.70006 1.26111 1.41618 1.16135 0.86430 0.79465 0.80718 0.80451 1.21108 1.21737 1.20985 0.92513 0.91624 0.94131 0.90720 0.91658 0.91164 0.90530 0.91121 0.90874 0.90450 0.91245 0.73365 0.89878 0.90490 0.92406 0.90242 0.90786 0.95185 0.96128 0.93564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 7.94 37.16 0.30 -1.93 16 2 C 0.15 2.85 3.26 -67.49 -0.22 2.63 16 3 H 0.03 0.60 7.57 -51.93 -0.39 0.20 16 4 C 0.09 1.40 4.89 -3.60 -0.02 1.38 16 5 N -0.59 -10.37 2.49 -172.22 -0.43 -10.80 16 6 C 0.51 8.74 6.91 -10.99 -0.08 8.67 16 7 O -0.55 -11.38 15.42 5.56 0.09 -11.30 16 8 C -0.10 -1.28 1.66 -91.77 -0.15 -1.44 16 9 H 0.10 1.07 7.11 -51.93 -0.37 0.70 16 10 C -0.12 -1.14 4.85 -26.73 -0.13 -1.27 16 11 C -0.11 -0.81 5.92 -26.73 -0.16 -0.97 16 12 C -0.11 -0.83 5.14 -26.73 -0.14 -0.97 16 13 C -0.08 -0.73 2.63 -91.78 -0.24 -0.97 16 14 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 15 C 0.48 5.04 7.63 36.00 0.27 5.31 16 16 O -0.51 -7.29 16.74 -18.75 -0.31 -7.60 16 17 O -0.52 -3.87 13.33 -39.26 -0.52 -4.40 16 18 C -0.08 -1.05 3.19 -26.73 -0.09 -1.14 16 19 C 0.09 1.84 5.99 -3.37 -0.02 1.82 16 20 C 0.18 4.08 2.35 -67.25 -0.16 3.92 16 21 H 0.10 2.65 6.07 -51.94 -0.32 2.34 16 22 C -0.14 -3.05 8.82 37.16 0.33 -2.72 16 23 N -0.58 -13.19 2.68 -156.76 -0.42 -13.61 16 24 C -0.26 -6.39 8.58 -15.06 -0.13 -6.52 16 25 H 0.07 1.70 6.22 -52.49 -0.33 1.38 16 26 C 0.01 0.16 4.89 -17.43 -0.09 0.08 16 27 N -0.90 -24.35 10.29 55.49 0.57 -23.78 16 28 Si 0.90 20.72 29.59 -169.99 -5.03 15.69 16 29 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 30 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 31 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 32 H 0.06 0.94 7.32 -51.93 -0.38 0.56 16 33 H 0.06 1.20 7.72 -51.93 -0.40 0.80 16 34 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.91 4.67 -51.93 -0.24 0.67 16 36 H 0.07 1.01 8.12 -51.93 -0.42 0.59 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.08 0.74 6.20 -51.93 -0.32 0.41 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.08 0.49 8.11 -51.93 -0.42 0.07 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.41 1.46 9.10 45.56 0.41 1.87 16 44 H 0.08 1.20 7.89 -51.93 -0.41 0.79 16 45 H 0.08 1.11 8.10 -51.93 -0.42 0.69 16 46 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 47 H 0.08 1.64 7.00 -51.93 -0.36 1.27 16 48 H 0.07 1.86 7.33 -51.93 -0.38 1.48 16 49 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 50 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 51 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 385.70 15.07 5.81 5.81 Total: -1.00 -31.85 385.70 -8.60 -40.45 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -7.64 Total: 3.63 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: -0.71 Total: 5.89 kcal Atomic # 7 Polarization: -47.90 SS G_CDS: -0.28 Total: -48.18 kcal Atomic # 8 Polarization: -22.54 SS G_CDS: -0.75 Total: -23.29 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.03 Total: 15.69 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.85 -8.60 -40.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604771235.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.535 kcal (2) G-P(sol) polarization free energy of solvation -31.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds