Wall clock time and date at job start Sat Apr 11 2020 05:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08991 * 109.74899 * 2 1 4 4 C 1.53373 * 109.60980 * 239.57029 * 2 1 3 5 5 N 1.46964 * 108.63629 * 190.83150 * 4 2 1 6 6 C 1.34771 * 120.59283 * 235.20515 * 5 4 2 7 7 O 1.21282 * 119.99519 * 185.50104 * 6 5 4 8 8 C 1.50695 * 120.00202 * 5.49988 * 6 5 4 9 9 H 1.08995 * 109.47158 * 44.36117 * 8 6 5 10 10 C 1.53003 * 109.47079 * 284.36208 * 8 6 5 11 11 C 1.53006 * 109.46944 * 180.02562 * 10 8 6 12 12 C 1.52998 * 109.47178 * 60.00043 * 11 10 8 13 13 C 1.53003 * 109.47148 * 299.99832 * 12 11 10 14 14 H 1.08995 * 109.47051 * 300.00240 * 13 12 11 15 15 C 1.50696 * 109.47164 * 180.02562 * 13 12 11 16 16 O 1.20823 * 119.99999 * 239.99921 * 15 13 12 17 17 O 1.34231 * 119.99819 * 59.99930 * 15 13 12 18 18 C 1.52994 * 109.47179 * 60.00137 * 13 12 11 19 19 C 1.46966 * 118.80844 * 55.48039 * 5 4 2 20 20 C 1.53809 * 108.40286 * 304.48255 * 19 5 4 21 21 H 1.08988 * 109.53617 * 169.30065 * 20 19 5 22 22 C 1.53005 * 109.73952 * 289.85251 * 20 19 5 23 23 N 1.46961 * 109.60731 * 120.42932 * 2 1 3 24 24 C 1.36938 * 120.59863 * 354.99242 * 23 2 1 25 25 H 1.08001 * 119.99656 * 29.08463 * 24 23 2 26 26 C 1.38813 * 119.99903 * 209.09445 * 24 23 2 27 27 N 1.31611 * 120.00558 * 17.69393 * 26 24 23 28 28 Si 1.86806 * 119.99750 * 197.69345 * 26 24 23 29 29 H 1.48504 * 109.47100 * 59.99949 * 28 26 24 30 30 H 1.48500 * 109.47253 * 179.97438 * 28 26 24 31 31 H 1.48503 * 109.47003 * 300.00003 * 28 26 24 32 32 H 1.08998 * 109.47407 * 180.42538 * 1 2 3 33 33 H 1.09002 * 109.46883 * 300.42759 * 1 2 3 34 34 H 1.08995 * 109.47138 * 60.42357 * 1 2 3 35 35 H 1.09004 * 109.60513 * 71.09017 * 4 2 1 36 36 H 1.09001 * 109.75165 * 310.66385 * 4 2 1 37 37 H 1.09003 * 109.46753 * 299.99404 * 10 8 6 38 38 H 1.08999 * 109.47171 * 60.00077 * 10 8 6 39 39 H 1.08995 * 109.47069 * 299.99772 * 11 10 8 40 40 H 1.09000 * 109.46897 * 179.97438 * 11 10 8 41 41 H 1.09001 * 109.47206 * 179.97438 * 12 11 10 42 42 H 1.08995 * 109.47341 * 59.99896 * 12 11 10 43 43 H 0.96708 * 116.99581 * 179.97438 * 17 15 13 44 44 H 1.09004 * 109.47161 * 59.99810 * 18 13 12 45 45 H 1.08994 * 109.47512 * 180.02562 * 18 13 12 46 46 H 1.09003 * 109.60754 * 64.26989 * 19 5 4 47 47 H 1.08999 * 109.60731 * 184.77520 * 19 5 4 48 48 H 1.09006 * 109.46866 * 172.72952 * 22 20 19 49 49 H 1.09001 * 109.46617 * 292.72550 * 22 20 19 50 50 H 1.08998 * 109.47216 * 52.72848 * 22 20 19 51 51 H 0.96995 * 120.00537 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8983 1.0258 0.0000 4 6 2.0447 -0.7317 -1.2458 5 7 3.4908 -0.9490 -1.0989 6 6 4.3491 -0.5134 -2.0422 7 8 5.5284 -0.7848 -1.9607 8 6 3.8437 0.3107 -3.1982 9 1 3.1511 1.0673 -2.8296 10 6 3.1225 -0.5982 -4.1956 11 6 2.6098 0.2385 -5.3696 12 6 3.7903 0.9214 -6.0631 13 6 4.5115 1.8303 -5.0656 14 1 3.8190 2.5872 -4.6973 15 6 5.6738 2.5034 -5.7488 16 8 6.7974 2.3316 -5.3391 17 8 5.4609 3.2939 -6.8126 18 6 5.0241 0.9937 -3.8917 19 6 3.9835 -1.6550 0.0922 20 6 3.4693 -0.9185 1.3407 21 1 3.6600 -1.5249 2.2260 22 6 4.1801 0.4298 1.4746 23 7 2.0232 -0.7012 1.1937 24 6 1.1510 -1.1446 2.1517 25 1 0.1431 -1.4202 1.8784 26 6 1.5622 -1.2396 3.4742 27 7 2.6372 -0.5961 3.8770 28 14 0.5896 -2.2811 4.6821 29 1 0.5636 -3.6897 4.2123 30 1 1.2319 -2.2177 6.0195 31 1 -0.7996 -1.7645 4.7746 32 1 -0.3634 -1.0276 0.0076 33 1 -0.3633 0.5205 0.8862 34 1 -0.3633 0.5072 -0.8937 35 1 1.8540 -0.1252 -2.1311 36 1 1.5387 -1.6921 -1.3443 37 1 3.8152 -1.3548 -4.5643 38 1 2.2818 -1.0851 -3.7014 39 1 1.9174 0.9954 -5.0013 40 1 2.0965 -0.4091 -6.0804 41 1 3.4251 1.5171 -6.8997 42 1 4.4828 0.1645 -6.4314 43 1 6.2375 3.7042 -7.2171 44 1 5.7166 0.2368 -4.2600 45 1 5.5375 1.6412 -3.1809 46 1 3.6120 -2.6798 0.0897 47 1 5.0735 -1.6585 0.0906 48 1 3.7238 1.0024 2.2822 49 1 5.2342 0.2642 1.6973 50 1 4.0887 0.9832 0.5401 51 1 2.9247 -0.6628 4.8010 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604771235.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:29:18 Heat of formation + Delta-G solvation = -136.800707 kcal Electronic energy + Delta-G solvation = -31757.825452 eV Core-core repulsion = 27656.242548 eV Total energy + Delta-G solvation = -4101.582904 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.87727 -41.14520 -39.26822 -38.22415 -37.08777 -35.68575 -34.34387 -33.37058 -32.24702 -31.85002 -29.71089 -27.84597 -27.23178 -25.63337 -25.42990 -24.25279 -22.44926 -22.27261 -21.21666 -20.63538 -20.02161 -18.95053 -18.43886 -17.84080 -17.42800 -16.88823 -16.84722 -16.66074 -16.24189 -15.80211 -15.57182 -15.38728 -15.08960 -15.02054 -14.64843 -14.53554 -14.20590 -13.98973 -13.59920 -13.51578 -13.41530 -13.26074 -13.01322 -12.86286 -12.75179 -12.59700 -12.45472 -12.38482 -12.32062 -12.23985 -12.13017 -11.96273 -11.87470 -11.72728 -11.61943 -11.50394 -11.41645 -11.35508 -11.12040 -10.54012 -10.43576 -9.68096 -8.49912 -7.77587 -5.23322 1.20716 1.49937 1.53303 1.57894 1.66757 1.97847 2.23831 2.56626 3.36366 3.38078 3.56020 3.68471 3.76430 3.87889 4.09047 4.13885 4.19643 4.26752 4.36285 4.37998 4.41468 4.44151 4.52942 4.61890 4.63565 4.66529 4.72615 4.74496 4.79853 4.94536 4.96767 5.03507 5.06527 5.09998 5.15857 5.18712 5.20145 5.29234 5.32217 5.38175 5.47263 5.51242 5.61319 5.63426 5.74202 5.76542 5.83858 6.47686 6.59303 7.00308 7.22069 7.24980 7.93272 8.46003 9.26648 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.022284 B = 0.002937 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.204247 B = 9530.803091 C =10030.698398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.145 3.855 3 H 0.019 0.981 4 C 0.099 3.901 5 N -0.596 5.596 6 C 0.508 3.492 7 O -0.596 6.596 8 C -0.095 4.095 9 H 0.119 0.881 10 C -0.113 4.113 11 C -0.107 4.107 12 C -0.107 4.107 13 C -0.074 4.074 14 H 0.138 0.862 15 C 0.486 3.514 16 O -0.558 6.558 17 O -0.506 6.506 18 C -0.079 4.079 19 C 0.104 3.896 20 C 0.184 3.816 21 H 0.067 0.933 22 C -0.118 4.118 23 N -0.595 5.595 24 C -0.249 4.249 25 H 0.079 0.921 26 C -0.048 4.048 27 N -0.925 5.925 28 Si 0.955 3.045 29 H -0.283 1.283 30 H -0.304 1.304 31 H -0.276 1.276 32 H 0.054 0.946 33 H 0.039 0.961 34 H 0.086 0.914 35 H 0.120 0.880 36 H 0.074 0.926 37 H 0.055 0.945 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.100 0.900 42 H 0.058 0.942 43 H 0.426 0.574 44 H 0.054 0.946 45 H 0.048 0.952 46 H 0.058 0.942 47 H 0.066 0.934 48 H 0.043 0.957 49 H 0.027 0.973 50 H 0.027 0.973 51 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.113 5.110 -23.387 24.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.038 3.962 3 H 0.037 0.963 4 C -0.025 4.025 5 N -0.326 5.326 6 C 0.298 3.702 7 O -0.477 6.477 8 C -0.115 4.115 9 H 0.137 0.863 10 C -0.151 4.151 11 C -0.144 4.144 12 C -0.144 4.144 13 C -0.093 4.093 14 H 0.156 0.844 15 C 0.330 3.670 16 O -0.449 6.449 17 O -0.319 6.319 18 C -0.117 4.117 19 C -0.020 4.020 20 C 0.076 3.924 21 H 0.085 0.915 22 C -0.177 4.177 23 N -0.318 5.318 24 C -0.380 4.380 25 H 0.097 0.903 26 C -0.244 4.244 27 N -0.571 5.571 28 Si 0.785 3.215 29 H -0.209 1.209 30 H -0.231 1.231 31 H -0.202 1.202 32 H 0.073 0.927 33 H 0.058 0.942 34 H 0.105 0.895 35 H 0.137 0.863 36 H 0.092 0.908 37 H 0.074 0.926 38 H 0.105 0.895 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.118 0.882 42 H 0.077 0.923 43 H 0.287 0.713 44 H 0.073 0.927 45 H 0.067 0.933 46 H 0.076 0.924 47 H 0.084 0.916 48 H 0.062 0.938 49 H 0.046 0.954 50 H 0.046 0.954 51 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -3.518 4.748 -22.900 23.650 hybrid contribution 1.051 -0.273 1.550 1.892 sum -2.467 4.475 -21.350 21.953 Atomic orbital electron populations 1.21690 0.93249 1.01887 1.01650 1.21063 0.94946 0.93322 0.86835 0.96285 1.22593 0.78475 1.01705 0.99691 1.48059 1.08212 1.56039 1.20310 1.21311 0.85410 0.79687 0.83838 1.90644 1.18849 1.60099 1.78104 1.21318 0.98723 0.98362 0.93145 0.86317 1.21687 1.00020 0.97502 0.95906 1.21534 0.96925 0.99701 0.96213 1.21580 0.97577 0.98037 0.97213 1.21114 0.93812 0.98848 0.95479 0.84449 1.23804 0.90318 0.75344 0.77556 1.90755 1.27601 1.61537 1.65023 1.84488 1.45158 1.59081 1.43155 1.21090 0.96368 0.98399 0.95888 1.22165 0.98603 0.95363 0.85907 1.20573 0.83557 0.94217 0.94043 0.91468 1.21733 0.97727 0.99354 0.98877 1.44358 1.01524 1.65191 1.20756 1.19435 0.96132 1.35638 0.86751 0.90310 1.25703 0.99317 1.00842 0.98504 1.70166 1.27851 1.43464 1.15648 0.85527 0.78436 0.79414 0.78101 1.20905 1.23066 1.20222 0.92654 0.94151 0.89533 0.86262 0.90797 0.92568 0.89531 0.88931 0.88852 0.88202 0.92291 0.71283 0.92703 0.93340 0.92357 0.91573 0.93769 0.95353 0.95389 0.94630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.75 7.94 71.98 0.57 -3.18 16 2 C 0.14 5.06 3.26 45.03 0.15 5.20 16 3 H 0.02 0.73 7.57 -2.39 -0.02 0.71 16 4 C 0.10 2.71 4.89 86.42 0.42 3.14 16 5 N -0.60 -20.13 2.49 -817.16 -2.03 -22.17 16 6 C 0.51 16.90 6.91 87.66 0.61 17.51 16 7 O -0.60 -25.24 15.42 -3.04 -0.05 -25.29 16 8 C -0.09 -2.09 1.66 -11.54 -0.02 -2.11 16 9 H 0.12 2.12 7.11 -2.39 -0.02 2.10 16 10 C -0.11 -1.78 4.85 30.60 0.15 -1.63 16 11 C -0.11 -0.94 5.92 30.60 0.18 -0.76 16 12 C -0.11 -1.16 5.14 30.59 0.16 -1.01 16 13 C -0.07 -1.16 2.63 -11.54 -0.03 -1.19 16 14 H 0.14 1.49 8.14 -2.39 -0.02 1.47 16 15 C 0.49 9.40 7.63 71.23 0.54 9.94 16 16 O -0.56 -16.16 16.74 21.97 0.37 -15.79 16 17 O -0.51 -6.10 13.33 -51.43 -0.69 -6.78 16 18 C -0.08 -1.93 3.19 30.59 0.10 -1.83 16 19 C 0.10 4.23 5.99 86.56 0.52 4.75 16 20 C 0.18 8.53 2.35 45.18 0.11 8.64 16 21 H 0.07 3.63 6.07 -2.39 -0.01 3.62 16 22 C -0.12 -5.49 8.82 71.98 0.63 -4.85 16 23 N -0.60 -26.97 2.68 -649.88 -1.74 -28.71 16 24 C -0.25 -12.44 8.58 84.03 0.72 -11.72 16 25 H 0.08 3.74 6.22 -2.91 -0.02 3.72 16 26 C -0.05 -2.53 4.89 84.86 0.41 -2.12 16 27 N -0.93 -52.38 10.29 21.65 0.22 -52.15 16 28 Si 0.96 43.35 29.59 68.60 2.03 45.38 16 29 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 30 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 31 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 32 H 0.05 1.65 7.32 -2.39 -0.02 1.63 16 33 H 0.04 1.39 7.72 -2.39 -0.02 1.37 16 34 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.12 2.23 4.67 -2.39 -0.01 2.22 16 36 H 0.07 1.98 8.12 -2.39 -0.02 1.96 16 37 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.09 1.22 6.20 -2.39 -0.01 1.21 16 39 H 0.09 0.50 8.14 -2.39 -0.02 0.49 16 40 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 41 H 0.10 0.73 8.11 -2.39 -0.02 0.71 16 42 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.43 1.99 9.10 -74.05 -0.67 1.32 16 44 H 0.05 1.63 7.89 -2.39 -0.02 1.61 16 45 H 0.05 1.43 8.10 -2.39 -0.02 1.41 16 46 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 47 H 0.07 2.84 7.00 -2.39 -0.02 2.82 16 48 H 0.04 2.30 7.33 -2.38 -0.02 2.28 16 49 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 50 H 0.03 1.21 7.20 -2.39 -0.02 1.19 16 51 H 0.24 13.78 8.31 -92.71 -0.77 13.01 16 Total: -1.00 -74.64 385.70 3.59 -71.05 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: 0.26 Total: 15.70 kcal Atomic # 6 Polarization: 13.55 SS G_CDS: 5.22 Total: 18.77 kcal Atomic # 7 Polarization: -99.48 SS G_CDS: -3.55 Total: -103.03 kcal Atomic # 8 Polarization: -47.50 SS G_CDS: -0.36 Total: -47.86 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Total: -74.64 3.59 -71.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604771235.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.753 kcal (2) G-P(sol) polarization free energy of solvation -74.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds