Wall clock time and date at job start Sat Apr 11 2020 05:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.49784 * 2 1 4 4 C 1.53043 * 109.49713 * 239.90666 * 2 1 3 5 5 C 1.53352 * 109.60777 * 301.42237 * 4 2 1 6 6 C 1.53190 * 109.14580 * 298.71270 * 5 4 2 7 7 N 1.46931 * 108.89607 * 54.57948 * 6 5 4 8 8 C 1.34769 * 120.63265 * 126.33978 * 7 6 5 9 9 O 1.21744 * 120.00001 * 175.43217 * 8 7 6 10 10 C 1.46380 * 120.00263 * 355.43950 * 8 7 6 11 11 C 1.33976 * 119.23108 * 36.54613 * 10 8 7 12 12 O 1.35001 * 121.68752 * 180.35443 * 11 10 8 13 13 C 1.43245 * 116.76522 * 342.81658 * 12 11 10 14 14 C 1.53549 * 108.08676 * 45.48799 * 13 12 11 15 15 O 1.36217 * 119.23012 * 216.27909 * 10 8 7 16 16 C 1.46925 * 118.73616 * 306.32010 * 7 6 5 17 17 H 1.09010 * 109.58672 * 293.67833 * 16 7 6 18 18 C 1.53002 * 109.58898 * 173.39608 * 16 7 6 19 19 C 1.53000 * 109.47368 * 181.75686 * 18 16 7 20 20 C 1.53002 * 109.47131 * 175.27961 * 19 18 16 21 21 N 1.46497 * 109.46842 * 180.02562 * 20 19 18 22 22 C 1.36939 * 119.99739 * 180.02562 * 21 20 19 23 23 H 1.08004 * 119.99954 * 359.97438 * 22 21 20 24 24 C 1.38811 * 120.00116 * 179.97438 * 22 21 20 25 25 N 1.31619 * 119.99957 * 180.02562 * 24 22 21 26 26 Si 1.86803 * 119.99884 * 0.02562 * 24 22 21 27 27 H 1.48504 * 109.46814 * 89.99806 * 26 24 22 28 28 H 1.48495 * 109.46816 * 209.99755 * 26 24 22 29 29 H 1.48492 * 109.47052 * 329.99746 * 26 24 22 30 30 H 1.08997 * 109.46854 * 299.93131 * 1 2 3 31 31 H 1.08997 * 109.46990 * 59.93289 * 1 2 3 32 32 H 1.09000 * 109.47120 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.45909 * 61.43156 * 4 2 1 34 34 H 1.08994 * 109.45983 * 181.40495 * 4 2 1 35 35 H 1.08995 * 109.68538 * 178.74668 * 5 4 2 36 36 H 1.08995 * 109.47404 * 58.54583 * 5 4 2 37 37 H 1.09001 * 109.58755 * 294.71844 * 6 5 4 38 38 H 1.08997 * 109.58623 * 174.43539 * 6 5 4 39 39 H 1.08004 * 119.15626 * 0.36886 * 11 10 8 40 40 H 1.08994 * 109.73927 * 165.14002 * 13 12 11 41 41 H 1.09004 * 109.73624 * 285.84680 * 13 12 11 42 42 H 1.08997 * 109.75408 * 61.47793 * 14 13 12 43 43 H 1.09001 * 109.75402 * 182.17091 * 14 13 12 44 44 H 1.09000 * 109.46638 * 301.76173 * 18 16 7 45 45 H 1.08998 * 109.46913 * 61.75526 * 18 16 7 46 46 H 1.09002 * 109.47018 * 295.28468 * 19 18 16 47 47 H 1.09006 * 109.46546 * 55.28196 * 19 18 16 48 48 H 1.09001 * 109.46929 * 300.00530 * 20 19 18 49 49 H 1.09000 * 109.46718 * 59.99926 * 20 19 18 50 50 H 0.96993 * 120.00506 * 359.97438 * 21 20 19 51 51 H 0.96999 * 119.99946 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0408 -0.7234 -1.2482 5 6 1.5027 -2.1592 -1.2673 6 6 2.0141 -2.9040 -0.0302 7 7 1.6516 -2.1378 1.1701 8 6 0.9748 -2.7215 2.1789 9 8 0.7530 -2.1007 3.2024 10 6 0.5067 -4.1018 2.0441 11 6 1.2682 -4.9901 1.3913 12 8 0.8816 -6.2737 1.2317 13 6 -0.1643 -6.7440 2.0901 14 6 -1.2705 -5.6795 2.1208 15 8 -0.6904 -4.4545 2.5900 16 6 2.0413 -0.7235 1.2497 17 1 3.1275 -0.6460 1.3007 18 6 1.4229 -0.0905 2.4979 19 6 1.7943 1.3927 2.5549 20 6 1.0808 2.0519 3.7370 21 7 1.4359 3.4722 3.7912 22 6 0.9140 4.2714 4.7731 23 1 0.2403 3.8547 5.5073 24 6 1.2509 5.6170 4.8249 25 7 0.7497 6.3850 5.7690 26 14 2.4156 6.3378 3.5546 27 1 1.6352 6.8331 2.3923 28 1 3.1719 7.4637 4.1591 29 1 3.3653 5.2896 3.1028 30 1 -0.3633 0.5128 0.8906 31 1 -0.3633 0.5149 -0.8894 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6987 -0.1963 -2.1389 34 1 3.1305 -0.7449 -1.2351 35 1 1.8475 -2.6687 -2.1670 36 1 0.4130 -2.1390 -1.2551 37 1 3.0980 -3.0042 -0.0861 38 1 1.5576 -3.8927 0.0158 39 1 2.2156 -4.6712 0.9826 40 1 -0.5652 -7.6806 1.7028 41 1 0.2263 -6.8980 3.0960 42 1 -1.6751 -5.5396 1.1184 43 1 -2.0649 -5.9932 2.7981 44 1 0.3384 -0.1923 2.4575 45 1 1.8023 -0.5945 3.3868 46 1 2.8725 1.4927 2.6796 47 1 1.4889 1.8795 1.6287 48 1 0.0026 1.9518 3.6122 49 1 1.3861 1.5650 4.6631 50 1 2.0412 3.8463 3.1321 51 1 0.9848 7.3254 5.8049 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707168151.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:29:35 Heat of formation + Delta-G solvation = -42.003127 kcal Electronic energy + Delta-G solvation = -31096.518248 eV Core-core repulsion = 26999.046075 eV Total energy + Delta-G solvation = -4097.472172 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.78650 -40.59586 -38.05949 -37.18067 -35.95295 -34.53154 -33.30771 -32.17378 -31.47451 -29.93841 -29.38842 -27.17101 -26.72218 -25.52128 -24.51198 -23.24922 -21.93457 -21.45848 -20.63646 -20.03957 -19.00743 -18.63080 -17.60516 -17.45041 -17.20490 -16.23213 -15.74935 -15.66036 -15.28090 -15.04003 -14.83041 -14.58246 -14.44193 -14.31578 -14.06343 -13.90709 -13.85140 -13.46242 -13.20230 -12.87144 -12.69483 -12.64699 -12.27304 -11.95932 -11.77798 -11.65311 -11.47703 -11.26962 -11.16711 -11.02167 -10.93050 -10.82867 -10.76615 -10.56961 -10.24998 -10.11784 -9.99554 -9.48356 -9.08937 -8.77863 -8.77465 -8.50644 -7.09915 -5.66445 -3.00534 1.06890 2.06986 2.67747 2.96446 3.27586 3.44186 3.46800 3.51221 3.85521 4.19543 4.33688 4.37198 4.45766 4.53366 4.57612 4.63682 4.68277 4.74359 4.87249 4.91506 4.98050 5.03182 5.11331 5.29473 5.32961 5.40045 5.47817 5.51812 5.54652 5.58326 5.62915 5.70876 5.77659 5.87761 5.92701 5.96607 6.11996 6.15148 6.24076 6.29496 6.36204 6.43833 6.47501 6.80191 6.91833 6.99623 7.01844 7.16783 7.99821 8.12509 8.53328 9.33452 10.05995 10.27164 11.52486 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.017478 B = 0.002653 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.603405 B =10552.588787 C =11649.598633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.106 4.106 3 H 0.090 0.910 4 C -0.116 4.116 5 C -0.136 4.136 6 C 0.067 3.933 7 N -0.596 5.596 8 C 0.572 3.428 9 O -0.498 6.498 10 C -0.058 4.058 11 C -0.028 4.028 12 O -0.303 6.303 13 C 0.013 3.987 14 C 0.018 3.982 15 O -0.285 6.285 16 C 0.157 3.843 17 H 0.075 0.925 18 C -0.111 4.111 19 C -0.136 4.136 20 C 0.160 3.840 21 N -0.758 5.758 22 C -0.238 4.238 23 H 0.090 0.910 24 C -0.001 4.001 25 N -0.938 5.938 26 Si 0.886 3.114 27 H -0.285 1.285 28 H -0.292 1.292 29 H -0.277 1.277 30 H 0.066 0.934 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.110 0.890 39 H 0.196 0.804 40 H 0.121 0.879 41 H 0.081 0.919 42 H 0.078 0.922 43 H 0.122 0.878 44 H 0.076 0.924 45 H 0.093 0.907 46 H 0.057 0.943 47 H 0.060 0.940 48 H 0.025 0.975 49 H 0.026 0.974 50 H 0.359 0.641 51 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.357 -30.845 -18.446 35.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.125 4.125 3 H 0.108 0.892 4 C -0.154 4.154 5 C -0.174 4.174 6 C -0.055 4.055 7 N -0.331 5.331 8 C 0.359 3.641 9 O -0.373 6.373 10 C -0.107 4.107 11 C -0.093 4.093 12 O -0.216 6.216 13 C -0.062 4.062 14 C -0.058 4.058 15 O -0.198 6.198 16 C 0.056 3.944 17 H 0.093 0.907 18 C -0.149 4.149 19 C -0.174 4.174 20 C 0.033 3.967 21 N -0.404 5.404 22 C -0.368 4.368 23 H 0.107 0.893 24 C -0.196 4.196 25 N -0.586 5.586 26 Si 0.716 3.284 27 H -0.212 1.212 28 H -0.218 1.218 29 H -0.204 1.204 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.127 0.873 39 H 0.212 0.788 40 H 0.139 0.861 41 H 0.099 0.901 42 H 0.096 0.904 43 H 0.140 0.860 44 H 0.094 0.906 45 H 0.111 0.889 46 H 0.076 0.924 47 H 0.078 0.922 48 H 0.043 0.957 49 H 0.044 0.956 50 H 0.191 0.809 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.051 -30.485 -17.657 35.245 hybrid contribution 0.716 0.496 -0.938 1.280 sum 1.766 -29.989 -18.595 35.331 Atomic orbital electron populations 1.21899 0.94624 1.01736 1.02304 1.21595 0.97038 1.00023 0.93866 0.89215 1.21631 1.00453 0.95230 0.98046 1.22000 1.01911 0.96358 0.97096 1.22731 1.00775 0.97175 0.84836 1.47888 1.56411 1.11622 1.17207 1.17216 0.78696 0.84267 0.83922 1.90969 1.55473 1.62603 1.28289 1.20613 0.89658 0.94916 1.05550 1.23712 1.00105 0.82926 1.02525 1.86126 1.53090 1.24851 1.57549 1.23707 0.88386 0.98206 0.95911 1.23703 0.95959 0.83869 1.02274 1.86497 1.31660 1.40073 1.61618 1.21444 0.98731 0.77804 0.96468 0.90722 1.22161 1.02031 0.94062 0.96614 1.21968 1.00518 0.95299 0.99644 1.20558 0.96624 0.84398 0.95073 1.42755 1.56840 1.05568 1.35212 1.19121 1.21989 0.90403 1.05297 0.89266 1.24683 1.00323 0.96178 0.98396 1.69711 1.48392 1.05776 1.34759 0.86508 0.81415 0.78655 0.81775 1.21188 1.21832 1.20356 0.91493 0.92888 0.92830 0.91542 0.91766 0.90720 0.90957 0.90616 0.87298 0.78823 0.86111 0.90064 0.90363 0.85973 0.90551 0.88920 0.92443 0.92171 0.95711 0.95595 0.80861 0.93204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 8.20 37.16 0.30 -1.34 16 2 C -0.11 -1.07 2.26 -90.50 -0.20 -1.27 16 3 H 0.09 0.96 6.64 -51.93 -0.34 0.62 16 4 C -0.12 -0.87 5.43 -26.53 -0.14 -1.01 16 5 C -0.14 -0.86 5.77 -26.45 -0.15 -1.01 16 6 C 0.07 0.44 4.92 -3.71 -0.02 0.42 16 7 N -0.60 -6.09 2.41 -166.85 -0.40 -6.49 16 8 C 0.57 7.42 7.31 -12.99 -0.09 7.33 16 9 O -0.50 -8.51 12.60 -4.16 -0.05 -8.56 16 10 C -0.06 -0.64 6.23 -37.81 -0.24 -0.88 16 11 C -0.03 -0.22 8.36 29.23 0.24 0.02 16 12 O -0.30 -2.28 10.47 -30.82 -0.32 -2.60 16 13 C 0.01 0.07 7.29 37.44 0.27 0.34 16 14 C 0.02 0.12 7.32 37.44 0.27 0.39 16 15 O -0.28 -3.31 10.45 -43.19 -0.45 -3.76 16 16 C 0.16 1.79 2.74 -67.60 -0.18 1.60 16 17 H 0.07 0.80 8.14 -51.92 -0.42 0.38 16 18 C -0.11 -1.65 2.64 -26.73 -0.07 -1.73 16 19 C -0.14 -2.26 5.05 -26.73 -0.13 -2.39 16 20 C 0.16 3.47 6.26 -4.04 -0.03 3.44 16 21 N -0.76 -19.50 5.41 -59.91 -0.32 -19.83 16 22 C -0.24 -7.20 10.47 -15.06 -0.16 -7.36 16 23 H 0.09 2.89 8.06 -52.48 -0.42 2.47 16 24 C 0.00 -0.02 5.50 -17.43 -0.10 -0.12 16 25 N -0.94 -30.72 13.97 55.49 0.78 -29.95 16 26 Si 0.89 23.03 27.74 -169.99 -4.71 18.32 16 27 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 28 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 29 H -0.28 -6.78 6.52 56.52 0.37 -6.41 16 30 H 0.07 0.89 6.35 -51.93 -0.33 0.56 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.59 5.97 -51.93 -0.31 0.28 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.07 0.53 6.34 -51.93 -0.33 0.20 16 37 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.11 0.62 3.60 -53.72 -0.19 0.43 16 39 H 0.20 1.12 5.32 -52.48 -0.28 0.84 16 40 H 0.12 0.28 8.14 -51.93 -0.42 -0.15 16 41 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.12 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.08 1.26 5.49 -51.93 -0.29 0.98 16 45 H 0.09 1.57 6.25 -51.93 -0.32 1.25 16 46 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.06 0.95 6.30 -51.93 -0.33 0.62 16 48 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 50 H 0.36 8.87 5.53 -40.82 -0.23 8.64 16 51 H 0.26 8.01 8.31 -40.82 -0.34 7.67 16 LS Contribution 379.52 15.07 5.72 5.72 Total: -1.00 -37.28 379.52 -8.23 -45.51 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -8.04 Total: 5.21 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: -0.42 Total: -3.56 kcal Atomic # 7 Polarization: -56.32 SS G_CDS: 0.05 Total: -56.27 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: -0.83 Total: -14.93 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -4.71 Total: 18.32 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -37.28 -8.23 -45.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707168151.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.510 kcal (2) G-P(sol) polarization free energy of solvation -37.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds