Wall clock time and date at job start Sat Apr 11 2020 05:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46503 * 120.00151 * 2 1 4 4 C 1.53007 * 109.46960 * 89.99841 * 3 2 1 5 5 H 1.08996 * 113.03124 * 72.78661 * 4 3 2 6 6 C 1.53927 * 113.75585 * 204.50911 * 4 3 2 7 7 C 1.53935 * 86.45632 * 138.09434 * 6 4 3 8 8 N 1.47963 * 86.17859 * 336.22037 * 7 6 4 9 9 C 1.46907 * 110.99602 * 137.58333 * 8 7 6 10 10 C 1.50700 * 109.47010 * 66.27667 * 9 8 7 11 11 O 1.21296 * 120.00053 * 5.69993 * 10 9 8 12 12 N 1.34781 * 119.99936 * 185.68994 * 10 9 8 13 13 C 1.37098 * 119.99994 * 179.97438 * 12 10 9 14 14 H 1.07999 * 119.99504 * 0.02562 * 13 12 10 15 15 C 1.38941 * 119.99816 * 180.02562 * 13 12 10 16 16 N 1.31417 * 120.00241 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99872 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47116 * 90.00285 * 17 15 13 19 19 H 1.48502 * 109.47054 * 210.00071 * 17 15 13 20 20 H 1.48493 * 109.47204 * 330.00137 * 17 15 13 21 21 C 1.34776 * 120.00112 * 180.02562 * 2 1 3 22 22 O 1.21281 * 119.99961 * 174.89748 * 21 2 1 23 23 C 1.50696 * 119.99874 * 354.88995 * 21 2 1 24 24 H 1.08997 * 109.88299 * 8.66397 * 23 21 2 25 25 C 1.54320 * 109.89013 * 247.62968 * 23 21 2 26 26 C 1.55399 * 102.89895 * 218.40684 * 25 23 21 27 27 C 1.54901 * 101.74106 * 35.48294 * 26 25 23 28 28 N 1.47445 * 109.88773 * 129.69464 * 23 21 2 29 29 C 1.46896 * 110.99968 * 356.14742 * 28 23 21 30 30 H 1.09005 * 109.47433 * 95.28779 * 1 2 3 31 31 H 1.09004 * 109.47276 * 215.28549 * 1 2 3 32 32 H 1.09000 * 109.47693 * 335.28804 * 1 2 3 33 33 H 1.09002 * 109.46713 * 330.00290 * 3 2 1 34 34 H 1.08992 * 109.47184 * 210.00214 * 3 2 1 35 35 H 1.08995 * 113.73897 * 23.67999 * 6 4 3 36 36 H 1.09004 * 113.73026 * 252.49752 * 6 4 3 37 37 H 1.08997 * 113.76462 * 90.54389 * 7 6 4 38 38 H 1.09002 * 113.76000 * 221.90565 * 7 6 4 39 39 H 1.08997 * 109.46690 * 186.27736 * 9 8 7 40 40 H 1.08996 * 109.46956 * 306.27278 * 9 8 7 41 41 H 0.96997 * 119.99333 * 0.02562 * 12 10 9 42 42 H 0.96997 * 119.99927 * 179.97438 * 16 15 13 43 43 H 1.09003 * 110.70626 * 336.69587 * 25 23 21 44 44 H 1.09000 * 110.70279 * 99.92891 * 25 23 21 45 45 H 1.08995 * 110.87604 * 277.39356 * 26 25 23 46 46 H 1.09007 * 111.02129 * 153.63265 * 26 25 23 47 47 H 1.09000 * 110.37354 * 204.18516 * 27 26 25 48 48 H 1.09008 * 110.37714 * 81.84543 * 27 26 25 49 49 H 1.09000 * 109.46902 * 71.36787 * 29 28 23 50 50 H 1.09000 * 109.47302 * 191.36777 * 29 28 23 51 51 H 1.08997 * 109.47534 * 311.36756 * 29 28 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 1.4426 5 1 3.2133 1.1120 1.9436 6 6 2.6540 3.2283 1.5999 7 6 1.7745 3.1181 2.8585 8 7 1.2162 1.8951 2.2407 9 6 1.0666 0.8242 3.2352 10 6 0.0205 1.2194 4.2453 11 8 -0.6179 2.2390 4.0901 12 7 -0.2060 0.4397 5.3212 13 6 -1.1573 0.7995 6.2404 14 1 -1.7256 1.7074 6.1022 15 6 -1.3904 -0.0040 7.3498 16 7 -0.6992 -1.1091 7.5176 17 14 -2.6871 0.4858 8.6019 18 1 -3.9959 -0.0988 8.2137 19 1 -2.2970 -0.0205 9.9424 20 1 -2.7993 1.9658 8.6452 21 6 2.1388 -1.1672 -0.0005 22 8 3.3480 -1.1692 -0.0939 23 6 1.3899 -2.4697 0.1151 24 1 0.3179 -2.2893 0.0351 25 6 1.7098 -3.1410 1.4673 26 6 1.7898 -4.6479 1.0962 27 6 2.4191 -4.5912 -0.3181 28 7 1.8237 -3.3939 -0.9486 29 6 2.7816 -2.7436 -1.8527 30 1 -0.3634 -0.0947 -1.0233 31 1 -0.3634 -0.8389 0.5936 32 1 -0.3634 0.9335 0.4296 33 1 1.6083 2.0284 -0.5138 34 1 3.1498 1.1384 -0.5138 35 1 2.2036 3.8160 0.8000 36 1 3.6848 3.5146 1.8088 37 1 2.3376 2.9306 3.7727 38 1 1.0516 3.9274 2.9613 39 1 0.7607 -0.0951 2.7358 40 1 2.0183 0.6632 3.7416 41 1 0.3047 -0.3755 5.4453 42 1 -0.8617 -1.6698 8.2922 43 1 2.6654 -2.7890 1.8559 44 1 0.9103 -2.9604 2.1859 45 1 0.7955 -5.0932 1.0635 46 1 2.4351 -5.1876 1.7894 47 1 2.1613 -5.4862 -0.8843 48 1 3.5017 -4.4844 -0.2478 49 1 3.7327 -2.6083 -1.3379 50 1 2.9308 -3.3675 -2.7338 51 1 2.3920 -1.7722 -2.1572 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231253963.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:30:06 Heat of formation + Delta-G solvation = -7.329677 kcal Electronic energy + Delta-G solvation = -31476.338832 eV Core-core repulsion = 27412.662964 eV Total energy + Delta-G solvation = -4063.675868 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.99443 -39.89413 -37.94796 -37.50019 -35.48119 -33.94066 -32.18709 -31.40532 -30.89730 -30.00650 -28.42705 -26.46790 -25.74004 -25.69117 -23.78910 -23.66897 -21.66416 -21.40141 -19.59620 -19.25352 -18.79093 -17.92225 -17.58896 -16.46009 -16.19656 -15.90546 -15.70479 -15.50979 -15.17622 -14.78769 -14.56510 -14.19627 -13.97473 -13.80337 -13.56815 -13.45157 -13.42223 -12.95171 -12.62991 -12.38659 -12.32832 -12.18595 -11.98555 -11.70232 -11.67114 -11.58202 -11.48897 -11.32382 -11.26464 -11.22916 -11.09219 -10.89999 -10.77723 -10.51854 -10.42089 -10.24157 -9.96829 -9.53024 -8.94666 -8.51049 -8.28301 -8.24260 -7.99315 -6.44634 -3.85653 2.42875 2.91639 3.15245 3.24254 3.29762 3.87030 3.87651 3.99017 4.20193 4.26714 4.47952 4.55115 4.63110 4.87130 4.93798 4.98420 5.08821 5.14912 5.21149 5.23947 5.29401 5.34463 5.35441 5.46167 5.50220 5.53763 5.57829 5.58955 5.71510 5.73442 5.74814 5.76917 5.80213 5.86618 5.87751 5.94909 5.97163 6.04583 6.10317 6.24404 6.35256 6.45123 6.64697 6.67655 6.77756 7.22090 7.34257 7.52057 8.02489 8.07487 8.57937 9.14841 9.50763 10.02308 10.73011 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.010879 B = 0.003578 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2573.257855 B = 7824.650810 C = 9793.526766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.601 5.601 3 C 0.138 3.862 4 C 0.008 3.992 5 H 0.077 0.923 6 C -0.140 4.140 7 C 0.021 3.979 8 N -0.443 5.443 9 C 0.016 3.984 10 C 0.443 3.557 11 O -0.578 6.578 12 N -0.564 5.564 13 C -0.299 4.299 14 H 0.103 0.897 15 C 0.023 3.977 16 N -0.901 5.901 17 Si 0.929 3.071 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.270 1.270 21 C 0.505 3.495 22 O -0.545 6.545 23 C 0.046 3.954 24 H 0.108 0.892 25 C -0.130 4.130 26 C -0.126 4.126 27 C 0.039 3.961 28 N -0.510 5.510 29 C 0.010 3.990 30 H 0.053 0.947 31 H 0.069 0.931 32 H 0.095 0.905 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.047 0.953 41 H 0.391 0.609 42 H 0.271 0.729 43 H 0.075 0.925 44 H 0.086 0.914 45 H 0.079 0.921 46 H 0.078 0.922 47 H 0.083 0.917 48 H 0.050 0.950 49 H 0.063 0.937 50 H 0.060 0.940 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.467 -3.349 -16.100 18.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.333 5.333 3 C 0.015 3.985 4 C -0.103 4.103 5 H 0.095 0.905 6 C -0.178 4.178 7 C -0.108 4.108 8 N -0.166 5.166 9 C -0.116 4.116 10 C 0.228 3.772 11 O -0.462 6.462 12 N -0.201 5.201 13 C -0.429 4.429 14 H 0.120 0.880 15 C -0.178 4.178 16 N -0.543 5.543 17 Si 0.756 3.244 18 H -0.204 1.204 19 H -0.209 1.209 20 H -0.194 1.194 21 C 0.293 3.707 22 O -0.422 6.422 23 C -0.065 4.065 24 H 0.126 0.874 25 C -0.168 4.168 26 C -0.164 4.164 27 C -0.089 4.089 28 N -0.235 5.235 29 C -0.138 4.138 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.113 0.887 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.108 0.892 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.113 0.887 39 H 0.102 0.898 40 H 0.065 0.935 41 H 0.224 0.776 42 H 0.081 0.919 43 H 0.094 0.906 44 H 0.105 0.895 45 H 0.098 0.902 46 H 0.097 0.903 47 H 0.101 0.899 48 H 0.069 0.931 49 H 0.081 0.919 50 H 0.079 0.921 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.569 -2.928 -16.725 18.206 hybrid contribution 1.001 -0.296 1.822 2.100 sum 7.571 -3.225 -14.903 17.024 Atomic orbital electron populations 1.21978 0.78607 1.04964 1.01274 1.47809 1.07548 1.05564 1.72356 1.21395 0.97487 0.84593 0.95059 1.24024 0.93307 0.96785 0.96196 0.90496 1.23405 1.00175 0.94863 0.99383 1.23646 0.96630 0.95324 0.95181 1.68435 1.29695 1.02671 1.15788 1.22396 0.98327 0.96576 0.94326 1.19702 0.87245 0.86442 0.83807 1.90523 1.51959 1.26619 1.77124 1.41884 1.35183 1.22880 1.20120 1.19685 1.14117 1.08446 1.00619 0.87955 1.25250 0.98590 0.95503 0.98502 1.69612 1.41046 1.13339 1.30263 0.85873 0.80261 0.78996 0.79263 1.20359 1.20931 1.19439 1.21053 0.87995 0.85761 0.75898 1.90645 1.14326 1.87191 1.50083 1.22788 1.01100 0.89656 0.92943 0.87438 1.22792 1.03287 0.95364 0.95384 1.22734 1.01897 0.95817 0.95935 1.23152 0.97585 0.93590 0.94536 1.64060 1.38423 1.05330 1.15680 1.22890 0.96124 0.98438 0.96367 0.92834 0.91224 0.88671 0.89866 0.89722 0.89167 0.91255 0.91841 0.88726 0.89795 0.93458 0.77607 0.91866 0.90596 0.89534 0.90246 0.90322 0.89906 0.93115 0.91869 0.92135 0.92192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.82 9.44 59.84 0.57 1.38 16 2 N -0.60 -7.23 2.83 -181.57 -0.51 -7.74 16 3 C 0.14 1.59 5.56 -4.04 -0.02 1.57 16 4 C 0.01 0.10 3.59 -66.46 -0.24 -0.14 16 5 H 0.08 1.09 7.73 -51.93 -0.40 0.69 16 6 C -0.14 -1.61 7.83 -25.80 -0.20 -1.82 16 7 C 0.02 0.32 6.61 -2.76 -0.02 0.30 16 8 N -0.44 -6.97 4.86 -231.85 -1.13 -8.10 16 9 C 0.02 0.28 5.38 -4.97 -0.03 0.26 16 10 C 0.44 10.23 7.48 -10.98 -0.08 10.15 16 11 O -0.58 -15.20 15.05 5.54 0.08 -15.11 16 12 N -0.56 -14.09 5.29 -10.96 -0.06 -14.15 16 13 C -0.30 -8.22 9.68 -14.94 -0.14 -8.37 16 14 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 15 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 16 N -0.90 -24.23 13.05 55.50 0.72 -23.51 16 17 Si 0.93 20.82 29.55 -169.99 -5.02 15.80 16 18 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 19 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 20 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 21 C 0.51 6.64 4.78 -10.99 -0.05 6.59 16 22 O -0.54 -8.43 13.26 5.56 0.07 -8.35 16 23 C 0.05 0.55 3.40 -67.88 -0.23 0.32 16 24 H 0.11 1.20 5.60 -51.93 -0.29 0.90 16 25 C -0.13 -1.50 6.48 -24.77 -0.16 -1.66 16 26 C -0.13 -1.23 7.08 -24.46 -0.17 -1.40 16 27 C 0.04 0.40 6.73 -2.30 -0.02 0.38 16 28 N -0.51 -5.93 5.44 -232.96 -1.27 -7.19 16 29 C 0.01 0.11 8.18 60.06 0.49 0.61 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.75 6.18 -51.93 -0.32 0.43 16 32 H 0.09 1.19 7.39 -51.93 -0.38 0.81 16 33 H 0.08 0.86 7.84 -51.93 -0.41 0.45 16 34 H 0.08 0.99 7.36 -51.93 -0.38 0.61 16 35 H 0.09 0.94 7.94 -51.93 -0.41 0.52 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 1.01 7.85 -51.93 -0.41 0.61 16 38 H 0.09 1.59 8.04 -51.93 -0.42 1.17 16 39 H 0.08 1.41 7.88 -51.93 -0.41 1.00 16 40 H 0.05 0.82 7.69 -51.93 -0.40 0.42 16 41 H 0.39 9.44 7.90 -40.82 -0.32 9.12 16 42 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 43 H 0.08 0.98 7.75 -51.93 -0.40 0.58 16 44 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.05 0.54 7.60 -51.92 -0.39 0.14 16 49 H 0.06 0.85 5.85 -51.93 -0.30 0.54 16 50 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 51 H 0.06 0.74 6.82 -51.93 -0.35 0.38 16 LS Contribution 398.27 15.07 6.00 6.00 Total: -1.00 -31.37 398.27 -9.99 -41.36 By element: Atomic # 1 Polarization: 20.79 SS G_CDS: -8.48 Total: 12.31 kcal Atomic # 6 Polarization: 9.10 SS G_CDS: -0.41 Total: 8.69 kcal Atomic # 7 Polarization: -58.45 SS G_CDS: -2.24 Total: -60.70 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: 0.16 Total: -23.47 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -31.37 -9.99 -41.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231253963.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.032 kcal (2) G-P(sol) polarization free energy of solvation -31.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds