Wall clock time and date at job start Sat Apr 11 2020 05:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46502 * 109.47079 * 2 1 4 4 C 1.36937 * 120.00177 * 264.29206 * 3 2 1 5 5 H 1.07991 * 120.00051 * 188.64342 * 4 3 2 6 6 C 1.38815 * 119.99926 * 8.63852 * 4 3 2 7 7 N 1.31618 * 119.99813 * 24.60105 * 6 4 3 8 8 Si 1.86799 * 119.99848 * 204.60719 * 6 4 3 9 9 H 1.48502 * 109.47293 * 85.02569 * 8 6 4 10 10 H 1.48503 * 109.46926 * 205.02637 * 8 6 4 11 11 H 1.48498 * 109.47169 * 325.02443 * 8 6 4 12 12 C 1.46497 * 119.99588 * 84.28976 * 3 2 1 13 13 C 1.52992 * 109.47197 * 269.99759 * 12 3 2 14 14 C 1.53009 * 109.47146 * 180.02562 * 13 12 3 15 15 N 1.46497 * 109.46892 * 180.02562 * 14 13 12 16 16 C 1.34775 * 119.99606 * 180.02562 * 15 14 13 17 17 O 1.21284 * 120.00413 * 359.97438 * 16 15 14 18 18 C 1.50706 * 119.99985 * 179.97438 * 16 15 14 19 19 O 1.42901 * 109.47138 * 180.02562 * 18 16 15 20 20 C 1.36228 * 116.99945 * 180.02562 * 19 18 16 21 21 C 1.40116 * 126.05198 * 269.68995 * 20 19 18 22 22 C 1.50703 * 125.81868 * 0.02562 * 21 20 19 23 23 N 1.30867 * 108.35685 * 179.81400 * 21 20 19 24 24 N 1.40077 * 108.31962 * 0.44642 * 23 21 20 25 25 C 1.46506 * 126.07521 * 179.68123 * 24 23 21 26 26 C 1.35581 * 126.05202 * 90.00320 * 20 19 18 27 27 C 1.50700 * 126.21136 * 0.02562 * 26 20 19 28 28 H 1.08998 * 109.47168 * 299.99360 * 1 2 3 29 29 H 1.08997 * 109.47471 * 59.99691 * 1 2 3 30 30 H 1.09004 * 109.46960 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46709 * 240.00111 * 2 1 3 32 32 H 1.08997 * 109.47471 * 120.00309 * 2 1 3 33 33 H 0.97007 * 119.99302 * 180.02562 * 7 6 4 34 34 H 1.09000 * 109.46900 * 149.99918 * 12 3 2 35 35 H 1.08998 * 109.47255 * 30.00168 * 12 3 2 36 36 H 1.08995 * 109.47160 * 60.00717 * 13 12 3 37 37 H 1.08998 * 109.47352 * 300.00349 * 13 12 3 38 38 H 1.09000 * 109.47020 * 60.00117 * 14 13 12 39 39 H 1.08998 * 109.47185 * 300.00335 * 14 13 12 40 40 H 0.96992 * 120.00426 * 0.02562 * 15 14 13 41 41 H 1.09000 * 109.47117 * 59.99986 * 18 16 15 42 42 H 1.08998 * 109.47176 * 300.00151 * 18 16 15 43 43 H 1.09001 * 109.46843 * 89.99835 * 22 21 20 44 44 H 1.09002 * 109.47058 * 209.99737 * 22 21 20 45 45 H 1.08996 * 109.47213 * 329.99978 * 22 21 20 46 46 H 1.09005 * 109.46975 * 270.04126 * 25 24 23 47 47 H 1.08996 * 109.47307 * 30.04038 * 25 24 23 48 48 H 1.09001 * 109.47142 * 150.04060 * 25 24 23 49 49 H 1.09008 * 109.47004 * 90.00431 * 27 26 20 50 50 H 1.09004 * 109.47462 * 210.00055 * 27 26 20 51 51 H 1.08997 * 109.47063 * 330.00839 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3578 1.9875 -1.1800 5 1 2.8470 2.9502 -1.1713 6 6 2.0730 1.3645 -2.3874 7 7 1.0958 0.4858 -2.4602 8 14 3.0770 1.7732 -3.9088 9 1 4.3045 0.9378 -3.9309 10 1 2.2688 1.4978 -5.1238 11 1 3.4556 3.2088 -3.8811 12 6 2.1434 2.1138 1.2625 13 6 0.8338 2.8473 1.5584 14 6 0.9647 3.6130 2.8767 15 7 -0.2895 4.3148 3.1603 16 6 -0.4070 5.0599 4.2772 17 8 0.5254 5.1489 5.0477 18 6 -1.6971 5.7824 4.5688 19 8 -1.5744 6.4983 5.7994 20 6 -2.6604 7.2099 6.2118 21 6 -2.9356 8.5483 5.9016 22 6 -2.0788 9.4508 5.0515 23 7 -4.0657 8.8797 6.4723 24 7 -4.5466 7.7677 7.1753 25 6 -5.7820 7.7119 7.9608 26 6 -3.6633 6.7502 6.9999 27 6 -3.7774 5.3628 7.5771 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 0.8972 0.0503 -3.3039 34 1 2.9552 2.8370 1.1839 35 1 2.3579 1.4132 2.0694 36 1 0.0221 2.1242 1.6370 37 1 0.6194 3.5480 0.7514 38 1 1.7764 4.3362 2.7977 39 1 1.1794 2.9127 3.6838 40 1 -1.0353 4.2433 2.5443 41 1 -2.5087 5.0591 4.6481 42 1 -1.9119 6.4824 3.7615 43 1 -2.3872 9.3684 4.0093 44 1 -2.1956 10.4821 5.3845 45 1 -1.0341 9.1545 5.1458 46 1 -5.5717 8.0028 8.9901 47 1 -6.5158 8.3949 7.5330 48 1 -6.1778 6.6964 7.9439 49 1 -3.2887 5.3331 8.5510 50 1 -4.8296 5.1018 7.6905 51 1 -3.2963 4.6500 6.9074 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265114936.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:30:54 Heat of formation + Delta-G solvation = 26.727610 kcal Electronic energy + Delta-G solvation = -28892.485699 eV Core-core repulsion = 24830.286666 eV Total energy + Delta-G solvation = -4062.199033 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.73183 -39.69322 -37.76552 -36.52503 -34.87485 -34.40986 -32.19831 -31.89711 -30.53832 -29.86307 -29.29220 -28.30700 -26.81852 -25.51999 -24.88376 -23.23764 -21.12122 -20.85646 -20.59169 -20.13625 -19.95417 -17.84920 -17.20707 -16.77929 -16.46426 -16.07404 -15.95060 -15.52266 -14.94206 -14.87713 -14.32028 -14.21984 -13.86240 -13.75265 -13.64955 -13.49682 -13.34784 -13.09750 -12.96350 -12.86706 -12.66826 -12.61957 -12.30271 -12.18016 -11.86228 -11.66687 -11.41048 -11.32385 -11.28748 -10.86739 -10.71428 -10.39898 -10.31586 -10.02200 -9.84462 -9.72485 -9.56897 -9.43275 -9.33844 -8.94928 -8.59656 -8.35130 -6.89023 -5.76394 -3.07143 1.32365 1.90210 2.14859 2.62219 2.95414 3.39957 3.47594 3.48401 3.87366 4.18473 4.22389 4.50981 4.55853 4.63736 4.72270 4.72520 4.88757 4.93486 4.96055 5.07648 5.10099 5.26506 5.34966 5.35530 5.43525 5.50113 5.51454 5.59556 5.70559 5.79254 5.89534 6.04590 6.11593 6.20441 6.41589 6.50965 6.55809 6.61968 6.76029 6.87856 6.93389 7.11056 7.18121 7.23512 7.32716 7.55877 7.67735 7.77970 8.09511 8.24667 8.37409 9.25255 9.88491 10.33380 11.27526 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.019477 B = 0.001777 C = 0.001733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.244119 B =15756.888347 C =16153.342696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.166 3.834 3 N -0.597 5.597 4 C -0.247 4.247 5 H 0.073 0.927 6 C -0.005 4.005 7 N -0.897 5.897 8 Si 0.896 3.104 9 H -0.289 1.289 10 H -0.294 1.294 11 H -0.282 1.282 12 C 0.156 3.844 13 C -0.155 4.155 14 C 0.122 3.878 15 N -0.724 5.724 16 C 0.512 3.488 17 O -0.523 6.523 18 C 0.040 3.960 19 O -0.272 6.272 20 C -0.058 4.058 21 C 0.071 3.929 22 C -0.076 4.076 23 N -0.286 5.286 24 N -0.373 5.373 25 C 0.105 3.895 26 C 0.076 3.924 27 C -0.089 4.089 28 H 0.013 0.987 29 H 0.090 0.910 30 H 0.017 0.983 31 H 0.087 0.913 32 H 0.002 0.998 33 H 0.251 0.749 34 H 0.047 0.953 35 H 0.040 0.960 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.401 0.599 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.075 0.925 45 H 0.084 0.916 46 H 0.075 0.925 47 H 0.091 0.909 48 H 0.088 0.912 49 H 0.085 0.915 50 H 0.072 0.928 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.547 11.346 19.063 26.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.041 3.959 3 N -0.318 5.318 4 C -0.376 4.376 5 H 0.091 0.909 6 C -0.202 4.202 7 N -0.544 5.544 8 Si 0.727 3.273 9 H -0.216 1.216 10 H -0.221 1.221 11 H -0.208 1.208 12 C 0.028 3.972 13 C -0.195 4.195 14 C -0.002 4.002 15 N -0.377 5.377 16 C 0.296 3.704 17 O -0.399 6.399 18 C -0.039 4.039 19 O -0.185 6.185 20 C -0.113 4.113 21 C -0.096 4.096 22 C -0.134 4.134 23 N -0.109 5.109 24 N -0.157 5.157 25 C -0.036 4.036 26 C -0.052 4.052 27 C -0.148 4.148 28 H 0.032 0.968 29 H 0.108 0.892 30 H 0.036 0.964 31 H 0.105 0.895 32 H 0.020 0.980 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.235 0.765 41 H 0.096 0.904 42 H 0.099 0.901 43 H 0.096 0.904 44 H 0.094 0.906 45 H 0.103 0.897 46 H 0.094 0.906 47 H 0.110 0.890 48 H 0.107 0.893 49 H 0.104 0.896 50 H 0.091 0.909 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -14.678 12.192 19.832 27.521 hybrid contribution 0.134 -0.456 -1.383 1.462 sum -14.544 11.736 18.449 26.261 Atomic orbital electron populations 1.22414 0.99416 0.98123 1.00977 1.20801 0.92431 0.84532 0.98168 1.44258 1.75743 1.10215 1.01598 1.19289 1.31135 1.03593 0.83583 0.90873 1.24719 0.98023 1.00104 0.97311 1.70154 1.27358 1.32004 1.24842 0.86383 0.80358 0.77836 0.82767 1.21650 1.22051 1.20796 1.20671 0.93648 0.94186 0.88736 1.22726 1.02908 0.99698 0.94216 1.21531 0.84916 0.95336 0.98401 1.46042 1.17803 1.50155 1.23705 1.20109 0.88967 0.79598 0.81691 1.90734 1.40314 1.61720 1.47095 1.22517 0.96413 0.96312 0.88661 1.86335 1.31443 1.63324 1.37422 1.17968 0.93960 0.91292 1.08083 1.22739 0.93598 0.94852 0.98387 1.20227 0.98163 0.97557 0.97471 1.77377 1.12357 1.07765 1.13435 1.48227 1.18855 1.08208 1.40428 1.21865 0.82745 1.04131 0.94871 1.21322 0.91279 0.92346 1.00241 1.20450 1.02932 0.89289 1.02081 0.96842 0.89178 0.96351 0.89516 0.97969 0.93879 0.93492 0.94187 0.91590 0.91415 0.91685 0.91853 0.76523 0.90404 0.90091 0.90391 0.90635 0.89683 0.90603 0.89015 0.89348 0.89614 0.90941 0.89458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.33 9.58 37.16 0.36 -2.97 16 2 C 0.17 3.90 5.64 -4.04 -0.02 3.87 16 3 N -0.60 -14.20 2.54 -173.25 -0.44 -14.64 16 4 C -0.25 -6.47 9.70 -15.06 -0.15 -6.62 16 5 H 0.07 1.90 7.93 -52.49 -0.42 1.48 16 6 C 0.00 -0.12 4.91 -17.43 -0.09 -0.21 16 7 N -0.90 -24.49 8.54 55.49 0.47 -24.01 16 8 Si 0.90 21.26 29.62 -169.99 -5.03 16.22 16 9 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 10 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 12 C 0.16 3.02 5.71 -4.05 -0.02 2.99 16 13 C -0.15 -2.58 5.53 -26.73 -0.15 -2.72 16 14 C 0.12 1.77 5.67 -4.04 -0.02 1.74 16 15 N -0.72 -9.08 5.56 -60.29 -0.33 -9.41 16 16 C 0.51 7.03 7.91 -10.98 -0.09 6.95 16 17 O -0.52 -9.49 16.50 -14.36 -0.24 -9.73 16 18 C 0.04 0.43 6.54 36.01 0.24 0.66 16 19 O -0.27 -3.57 9.70 -40.38 -0.39 -3.96 16 20 C -0.06 -0.68 6.15 -39.83 -0.24 -0.93 16 21 C 0.07 0.82 7.22 -82.30 -0.59 0.23 16 22 C -0.08 -0.68 10.44 36.01 0.38 -0.30 16 23 N -0.29 -3.35 12.57 33.72 0.42 -2.93 16 24 N -0.37 -3.49 4.04 -63.59 -0.26 -3.75 16 25 C 0.10 0.48 11.29 59.85 0.68 1.16 16 26 C 0.08 0.74 6.97 -81.75 -0.57 0.17 16 27 C -0.09 -0.58 10.10 36.01 0.36 -0.21 16 28 H 0.01 0.26 5.98 -51.93 -0.31 -0.05 16 29 H 0.09 2.28 6.28 -51.93 -0.33 1.95 16 30 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.09 2.29 5.87 -51.93 -0.31 1.98 16 32 H 0.00 0.05 7.97 -51.93 -0.41 -0.37 16 33 H 0.25 6.73 8.31 -40.82 -0.34 6.39 16 34 H 0.05 0.90 8.03 -51.93 -0.42 0.48 16 35 H 0.04 0.72 7.95 -51.93 -0.41 0.31 16 36 H 0.07 1.13 5.93 -51.93 -0.31 0.83 16 37 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 38 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.40 4.07 8.47 -40.82 -0.35 3.73 16 41 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 46 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 47 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.09 0.20 7.09 -51.93 -0.37 -0.17 16 49 H 0.09 0.51 8.14 -51.92 -0.42 0.09 16 50 H 0.07 0.29 7.12 -51.93 -0.37 -0.08 16 51 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 416.54 15.07 6.28 6.28 Total: -1.00 -33.88 416.54 -8.08 -41.96 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -8.62 Total: 0.18 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: 0.06 Total: 3.80 kcal Atomic # 7 Polarization: -54.61 SS G_CDS: -0.13 Total: -54.75 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: -0.63 Total: -13.69 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.03 Total: 16.22 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -33.88 -8.08 -41.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265114936.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.688 kcal (2) G-P(sol) polarization free energy of solvation -33.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds