Wall clock time and date at job start Sat Apr 11 2020 05:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46007 * 118.53420 * 2 1 4 4 C 1.53174 * 109.94334 * 161.66320 * 3 2 1 5 5 N 1.47189 * 108.56692 * 50.67193 * 4 3 2 6 6 C 1.46896 * 111.00037 * 167.45962 * 5 4 3 7 7 C 1.50707 * 109.46862 * 56.84526 * 6 5 4 8 8 O 1.21278 * 120.00170 * 359.97438 * 7 6 5 9 9 N 1.34774 * 119.99607 * 180.02562 * 7 6 5 10 10 C 1.46933 * 120.63448 * 359.97438 * 9 7 6 11 11 C 1.53190 * 108.77707 * 233.59114 * 10 9 7 12 12 C 1.53048 * 109.31039 * 305.36267 * 11 10 9 13 13 C 1.53037 * 109.53775 * 61.36831 * 12 11 10 14 14 H 1.09006 * 109.49828 * 58.58002 * 13 12 11 15 15 C 1.52997 * 109.49720 * 178.67938 * 13 12 11 16 16 N 1.46505 * 109.47102 * 184.99722 * 15 13 12 17 17 C 1.36935 * 120.00062 * 180.02562 * 16 15 13 18 18 H 1.08005 * 119.99785 * 359.97438 * 17 16 15 19 19 C 1.38813 * 120.00309 * 180.02562 * 17 16 15 20 20 N 1.31623 * 119.99489 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00292 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47518 * 59.99557 * 21 19 17 23 23 H 1.48503 * 109.47204 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.47169 * 299.99577 * 21 19 17 25 25 C 1.46923 * 120.62914 * 179.72234 * 9 7 6 26 26 C 1.46901 * 110.17420 * 290.82549 * 5 4 3 27 27 C 1.33713 * 118.53704 * 180.27115 * 2 1 3 28 28 O 1.21279 * 118.62491 * 1.68309 * 27 2 1 29 29 H 1.09001 * 109.47060 * 179.73586 * 1 2 3 30 30 H 1.09004 * 109.47073 * 299.73075 * 1 2 3 31 31 H 1.09000 * 109.47212 * 59.73157 * 1 2 3 32 32 H 1.08997 * 109.37844 * 282.01629 * 3 2 1 33 33 H 1.09004 * 109.37146 * 41.66775 * 3 2 1 34 34 H 1.08996 * 109.81568 * 290.86433 * 4 3 2 35 35 H 1.08997 * 109.53127 * 170.30623 * 4 3 2 36 36 H 1.08995 * 109.47200 * 176.84063 * 6 5 4 37 37 H 1.08999 * 109.47257 * 296.84328 * 6 5 4 38 38 H 1.09002 * 109.58552 * 353.37576 * 10 9 7 39 39 H 1.09002 * 109.58513 * 113.79978 * 10 9 7 40 40 H 1.08997 * 109.50008 * 65.31191 * 11 10 9 41 41 H 1.09002 * 109.49685 * 185.38212 * 11 10 9 42 42 H 1.09004 * 109.45662 * 181.38607 * 12 11 10 43 43 H 1.08993 * 109.46154 * 301.35664 * 12 11 10 44 44 H 1.08993 * 109.47196 * 305.00110 * 15 13 12 45 45 H 1.08996 * 109.47162 * 65.00367 * 15 13 12 46 46 H 0.96996 * 120.00158 * 0.02562 * 16 15 13 47 47 H 0.97004 * 119.99680 * 180.02562 * 20 19 17 48 48 H 1.09004 * 109.58249 * 246.19970 * 25 9 7 49 49 H 1.09001 * 109.58748 * 6.61610 * 25 9 7 50 50 H 1.09003 * 109.38801 * 290.14382 * 26 5 4 51 51 H 1.08998 * 109.38992 * 170.45688 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1625 1.2827 0.0000 4 6 3.6128 1.0888 0.4530 5 7 4.2093 0.0003 -0.3380 6 6 5.6676 -0.0378 -0.1655 7 6 5.9967 -0.1834 1.2980 8 8 5.1042 -0.2485 2.1166 9 7 7.2827 -0.2401 1.6971 10 6 8.3749 -0.1620 0.7172 11 6 9.3004 -1.3668 0.9133 12 6 9.7657 -1.4158 2.3705 13 6 8.5534 -1.5834 3.2894 14 1 8.0210 -2.4974 3.0263 15 6 9.0224 -1.6653 4.7435 16 7 7.8756 -1.9447 5.6114 17 6 8.0533 -2.0622 6.9641 18 1 9.0389 -1.9491 7.3911 19 6 6.9669 -2.3275 7.7864 20 7 5.7659 -2.4657 7.2659 21 14 7.2092 -2.4870 9.6317 22 1 7.7650 -1.2192 10.1695 23 1 5.9031 -2.7686 10.2799 24 1 8.1520 -3.5994 9.9129 25 6 7.6194 -0.3758 3.1208 26 6 3.6019 -1.2855 0.0306 27 6 2.1038 -1.1747 -0.0056 28 8 1.4466 -2.1933 -0.0416 29 1 -0.3633 -1.0277 -0.0047 30 1 -0.3633 0.5097 0.8924 31 1 -0.3634 0.5180 -0.8876 32 1 2.1472 1.7027 -1.0057 33 1 1.6604 1.9673 0.6836 34 1 3.6377 0.8280 1.5110 35 1 4.1723 2.0096 0.2879 36 1 6.0766 -0.8850 -0.7158 37 1 6.1027 0.8865 -0.5456 38 1 7.9625 -0.1784 -0.2916 39 1 8.9371 0.7594 0.8695 40 1 8.7610 -2.2829 0.6727 41 1 10.1659 -1.2712 0.2576 42 1 10.4440 -2.2581 2.5069 43 1 10.2832 -0.4890 2.6178 44 1 9.7572 -2.4639 4.8438 45 1 9.4746 -0.7169 5.0333 46 1 6.9906 -2.0466 5.2279 47 1 5.0067 -2.6508 7.8406 48 1 8.1212 0.5284 3.4653 49 1 6.7085 -0.5332 3.6983 50 1 3.9202 -1.5610 1.0361 51 1 3.9250 -2.0531 -0.6725 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265615419.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:31:15 Heat of formation + Delta-G solvation = -35.544974 kcal Electronic energy + Delta-G solvation = -30824.299441 eV Core-core repulsion = 26759.400066 eV Total energy + Delta-G solvation = -4064.899375 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.03777 -39.98119 -38.18391 -36.65830 -35.24938 -34.99506 -33.02631 -31.74473 -30.51175 -29.92736 -29.39588 -26.96941 -25.56297 -25.26089 -24.40883 -23.21765 -22.73093 -21.46449 -20.19942 -19.15153 -18.73875 -17.39504 -17.27368 -16.95078 -16.86318 -16.11672 -15.87837 -15.39580 -14.97359 -14.87347 -14.68479 -14.49457 -14.32602 -13.85462 -13.63123 -13.46380 -13.28109 -13.23831 -12.97802 -12.81429 -12.63772 -12.47646 -12.38015 -12.25488 -11.81717 -11.69178 -11.53664 -11.34838 -11.16158 -11.04770 -10.84257 -10.70027 -10.49324 -10.35179 -10.32956 -9.99985 -9.88992 -9.61868 -8.87075 -8.86022 -8.58525 -8.46105 -6.89991 -5.71982 -3.02110 2.49115 2.58165 2.86837 2.96258 3.45940 3.46475 3.49943 3.51869 4.30699 4.39607 4.56557 4.58100 4.65752 4.69964 4.81430 4.92060 5.05752 5.10002 5.14738 5.17758 5.18379 5.26348 5.30769 5.34925 5.36906 5.45566 5.56163 5.58457 5.60875 5.72272 5.74132 5.78251 5.86706 5.91101 6.04512 6.08561 6.16357 6.18299 6.34425 6.37219 6.49697 6.52407 6.57100 6.74090 6.84640 7.27701 7.38439 7.71630 8.06346 8.11642 8.45545 9.56493 10.14026 10.48142 11.50142 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.009781 B = 0.003212 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2861.969722 B = 8714.978309 C =10891.797689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.608 5.608 3 C 0.123 3.877 4 C 0.012 3.988 5 N -0.507 5.507 6 C 0.033 3.967 7 C 0.477 3.523 8 O -0.531 6.531 9 N -0.607 5.607 10 C 0.105 3.895 11 C -0.134 4.134 12 C -0.113 4.113 13 C -0.106 4.106 14 H 0.073 0.927 15 C 0.160 3.840 16 N -0.733 5.733 17 C -0.244 4.244 18 H 0.069 0.931 19 C -0.012 4.012 20 N -0.930 5.930 21 Si 0.907 3.093 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C 0.118 3.882 26 C 0.025 3.975 27 C 0.530 3.470 28 O -0.554 6.554 29 H 0.089 0.911 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.108 0.892 37 H 0.110 0.890 38 H 0.082 0.918 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.064 0.936 44 H 0.021 0.979 45 H 0.019 0.981 46 H 0.385 0.615 47 H 0.256 0.744 48 H 0.065 0.935 49 H 0.103 0.897 50 H 0.101 0.899 51 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.031 10.367 -22.448 24.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.341 5.341 3 C 0.000 4.000 4 C -0.116 4.116 5 N -0.231 5.231 6 C -0.099 4.099 7 C 0.263 3.737 8 O -0.409 6.409 9 N -0.340 5.340 10 C -0.018 4.018 11 C -0.172 4.172 12 C -0.151 4.151 13 C -0.126 4.126 14 H 0.092 0.908 15 C 0.032 3.968 16 N -0.378 5.378 17 C -0.375 4.375 18 H 0.087 0.913 19 C -0.208 4.208 20 N -0.578 5.578 21 Si 0.738 3.262 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.003 4.003 26 C -0.105 4.105 27 C 0.318 3.682 28 O -0.431 6.431 29 H 0.108 0.892 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.110 0.890 35 H 0.108 0.892 36 H 0.126 0.874 37 H 0.128 0.872 38 H 0.100 0.900 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.092 0.908 42 H 0.085 0.915 43 H 0.082 0.918 44 H 0.039 0.961 45 H 0.037 0.963 46 H 0.219 0.781 47 H 0.066 0.934 48 H 0.083 0.917 49 H 0.121 0.879 50 H 0.119 0.881 51 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 0.152 9.888 -22.378 24.466 hybrid contribution 0.215 -0.160 1.790 1.810 sum 0.367 9.728 -20.588 22.774 Atomic orbital electron populations 1.21735 0.79569 1.04561 1.01141 1.47272 1.07287 1.06299 1.73277 1.21522 0.92028 0.84702 1.01747 1.22932 0.93855 0.95041 0.99786 1.63051 1.02451 1.03974 1.53621 1.22400 0.89761 1.05291 0.92426 1.21969 0.82682 0.76769 0.92232 1.90688 1.45192 1.49827 1.55148 1.48385 1.05399 1.71638 1.08613 1.21776 0.88885 0.98992 0.92142 1.21914 0.99165 0.98347 0.97798 1.21526 0.97670 1.02320 0.93586 1.21749 0.95783 0.98399 0.96657 0.90841 1.20631 0.91424 0.97530 0.87198 1.42398 1.05484 1.86241 1.03631 1.19152 0.93825 1.41307 0.83248 0.91300 1.24758 0.95430 1.02644 0.97989 1.69665 0.98467 1.55322 1.34302 0.86283 0.76591 0.77815 0.85556 1.21293 1.21675 1.21294 1.21827 1.01152 0.97652 0.79708 1.22485 0.90526 0.92937 1.04579 1.20028 0.90236 0.82938 0.74968 1.90706 1.66791 1.34656 1.50972 0.89191 0.92187 0.92311 0.91226 0.90311 0.89035 0.89207 0.87362 0.87169 0.89995 0.91168 0.91455 0.90776 0.91473 0.91760 0.96102 0.96317 0.78135 0.93412 0.91653 0.87902 0.88122 0.87294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.73 10.55 59.85 0.63 1.36 16 2 N -0.61 -7.27 3.23 -182.35 -0.59 -7.85 16 3 C 0.12 1.11 6.65 -4.22 -0.03 1.08 16 4 C 0.01 0.12 4.92 -3.58 -0.02 0.10 16 5 N -0.51 -5.23 4.94 -237.43 -1.17 -6.40 16 6 C 0.03 0.28 4.19 -4.97 -0.02 0.26 16 7 C 0.48 6.09 7.02 -10.98 -0.08 6.01 16 8 O -0.53 -9.16 11.07 5.56 0.06 -9.10 16 9 N -0.61 -7.33 2.97 -172.51 -0.51 -7.84 16 10 C 0.11 0.83 6.34 -3.71 -0.02 0.81 16 11 C -0.13 -1.13 6.08 -26.61 -0.16 -1.29 16 12 C -0.11 -1.27 5.16 -26.69 -0.14 -1.41 16 13 C -0.11 -1.65 2.38 -90.30 -0.22 -1.87 16 14 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 15 C 0.16 3.17 5.65 -4.04 -0.02 3.15 16 16 N -0.73 -18.84 5.38 -59.91 -0.32 -19.16 16 17 C -0.24 -6.96 9.99 -15.06 -0.15 -7.11 16 18 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 19 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 20 N -0.93 -29.06 13.06 55.49 0.72 -28.34 16 21 Si 0.91 22.87 29.55 -169.99 -5.02 17.85 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 23 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 25 C 0.12 1.86 5.54 -3.50 -0.02 1.84 16 26 C 0.02 0.32 5.35 -5.19 -0.03 0.29 16 27 C 0.53 7.82 7.57 -11.67 -0.09 7.73 16 28 O -0.55 -10.02 16.07 5.56 0.09 -9.93 16 29 H 0.09 1.07 6.67 -51.93 -0.35 0.72 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.59 8.12 -51.93 -0.42 0.17 16 34 H 0.09 1.26 5.51 -51.93 -0.29 0.98 16 35 H 0.09 0.72 8.06 -51.93 -0.42 0.30 16 36 H 0.11 0.75 7.67 -51.93 -0.40 0.35 16 37 H 0.11 0.66 7.94 -51.93 -0.41 0.25 16 38 H 0.08 0.43 5.93 -51.93 -0.31 0.12 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.38 10.60 6.92 -40.82 -0.28 10.32 16 47 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 48 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 49 H 0.10 2.08 6.23 -51.93 -0.32 1.76 16 50 H 0.10 1.58 5.79 -51.93 -0.30 1.28 16 51 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 391.32 15.07 5.90 5.90 Total: -1.00 -36.36 391.32 -9.84 -46.21 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: -8.54 Total: 8.16 kcal Atomic # 6 Polarization: 10.97 SS G_CDS: -0.45 Total: 10.51 kcal Atomic # 7 Polarization: -67.72 SS G_CDS: -1.87 Total: -69.60 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: 0.15 Total: -19.03 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.02 Total: 17.85 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -36.36 -9.84 -46.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265615419.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.661 kcal (2) G-P(sol) polarization free energy of solvation -36.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds