Wall clock time and date at job start Sat Apr 11 2020 05:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46007 * 118.53420 * 2 1 4 4 C 1.53174 * 109.94334 * 161.66320 * 3 2 1 5 5 N 1.47189 * 108.56692 * 50.67193 * 4 3 2 6 6 C 1.46896 * 111.00037 * 167.45962 * 5 4 3 7 7 C 1.50707 * 109.46862 * 56.84526 * 6 5 4 8 8 O 1.21278 * 120.00170 * 359.97438 * 7 6 5 9 9 N 1.34774 * 119.99607 * 180.02562 * 7 6 5 10 10 C 1.46933 * 120.63448 * 359.97438 * 9 7 6 11 11 C 1.53190 * 108.77707 * 233.59114 * 10 9 7 12 12 C 1.53048 * 109.31039 * 305.36267 * 11 10 9 13 13 C 1.53037 * 109.53775 * 61.36831 * 12 11 10 14 14 H 1.09006 * 109.49828 * 58.58002 * 13 12 11 15 15 C 1.52997 * 109.49720 * 178.67938 * 13 12 11 16 16 N 1.46505 * 109.47102 * 184.99722 * 15 13 12 17 17 C 1.36935 * 120.00062 * 180.02562 * 16 15 13 18 18 H 1.08005 * 119.99785 * 359.97438 * 17 16 15 19 19 C 1.38813 * 120.00309 * 180.02562 * 17 16 15 20 20 N 1.31623 * 119.99489 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00292 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47518 * 59.99557 * 21 19 17 23 23 H 1.48503 * 109.47204 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.47169 * 299.99577 * 21 19 17 25 25 C 1.46923 * 120.62914 * 179.72234 * 9 7 6 26 26 C 1.46901 * 110.17420 * 290.82549 * 5 4 3 27 27 C 1.33713 * 118.53704 * 180.27115 * 2 1 3 28 28 O 1.21279 * 118.62491 * 1.68309 * 27 2 1 29 29 H 1.09001 * 109.47060 * 179.73586 * 1 2 3 30 30 H 1.09004 * 109.47073 * 299.73075 * 1 2 3 31 31 H 1.09000 * 109.47212 * 59.73157 * 1 2 3 32 32 H 1.08997 * 109.37844 * 282.01629 * 3 2 1 33 33 H 1.09004 * 109.37146 * 41.66775 * 3 2 1 34 34 H 1.08996 * 109.81568 * 290.86433 * 4 3 2 35 35 H 1.08997 * 109.53127 * 170.30623 * 4 3 2 36 36 H 1.08995 * 109.47200 * 176.84063 * 6 5 4 37 37 H 1.08999 * 109.47257 * 296.84328 * 6 5 4 38 38 H 1.09002 * 109.58552 * 353.37576 * 10 9 7 39 39 H 1.09002 * 109.58513 * 113.79978 * 10 9 7 40 40 H 1.08997 * 109.50008 * 65.31191 * 11 10 9 41 41 H 1.09002 * 109.49685 * 185.38212 * 11 10 9 42 42 H 1.09004 * 109.45662 * 181.38607 * 12 11 10 43 43 H 1.08993 * 109.46154 * 301.35664 * 12 11 10 44 44 H 1.08993 * 109.47196 * 305.00110 * 15 13 12 45 45 H 1.08996 * 109.47162 * 65.00367 * 15 13 12 46 46 H 0.96996 * 120.00158 * 0.02562 * 16 15 13 47 47 H 0.97004 * 119.99680 * 180.02562 * 20 19 17 48 48 H 1.09004 * 109.58249 * 246.19970 * 25 9 7 49 49 H 1.09001 * 109.58748 * 6.61610 * 25 9 7 50 50 H 1.09003 * 109.38801 * 290.14382 * 26 5 4 51 51 H 1.08998 * 109.38992 * 170.45688 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1625 1.2827 0.0000 4 6 3.6128 1.0888 0.4530 5 7 4.2093 0.0003 -0.3380 6 6 5.6676 -0.0378 -0.1655 7 6 5.9967 -0.1834 1.2980 8 8 5.1042 -0.2485 2.1166 9 7 7.2827 -0.2401 1.6971 10 6 8.3749 -0.1620 0.7172 11 6 9.3004 -1.3668 0.9133 12 6 9.7657 -1.4158 2.3705 13 6 8.5534 -1.5834 3.2894 14 1 8.0210 -2.4974 3.0263 15 6 9.0224 -1.6653 4.7435 16 7 7.8756 -1.9447 5.6114 17 6 8.0533 -2.0622 6.9641 18 1 9.0389 -1.9491 7.3911 19 6 6.9669 -2.3275 7.7864 20 7 5.7659 -2.4657 7.2659 21 14 7.2092 -2.4870 9.6317 22 1 7.7650 -1.2192 10.1695 23 1 5.9031 -2.7686 10.2799 24 1 8.1520 -3.5994 9.9129 25 6 7.6194 -0.3758 3.1208 26 6 3.6019 -1.2855 0.0306 27 6 2.1038 -1.1747 -0.0056 28 8 1.4466 -2.1933 -0.0416 29 1 -0.3633 -1.0277 -0.0047 30 1 -0.3633 0.5097 0.8924 31 1 -0.3634 0.5180 -0.8876 32 1 2.1472 1.7027 -1.0057 33 1 1.6604 1.9673 0.6836 34 1 3.6377 0.8280 1.5110 35 1 4.1723 2.0096 0.2879 36 1 6.0766 -0.8850 -0.7158 37 1 6.1027 0.8865 -0.5456 38 1 7.9625 -0.1784 -0.2916 39 1 8.9371 0.7594 0.8695 40 1 8.7610 -2.2829 0.6727 41 1 10.1659 -1.2712 0.2576 42 1 10.4440 -2.2581 2.5069 43 1 10.2832 -0.4890 2.6178 44 1 9.7572 -2.4639 4.8438 45 1 9.4746 -0.7169 5.0333 46 1 6.9906 -2.0466 5.2279 47 1 5.0067 -2.6508 7.8406 48 1 8.1212 0.5284 3.4653 49 1 6.7085 -0.5332 3.6983 50 1 3.9202 -1.5610 1.0361 51 1 3.9250 -2.0531 -0.6725 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265615419.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:31:14 Heat of formation + Delta-G solvation = -64.300343 kcal Electronic energy + Delta-G solvation = -30825.546367 eV Core-core repulsion = 26759.400066 eV Total energy + Delta-G solvation = -4066.146301 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.00356 -41.01888 -39.26298 -37.72483 -36.63412 -36.18351 -34.51729 -33.08080 -31.70641 -31.08789 -30.50231 -27.98832 -27.05755 -26.21336 -25.33347 -24.86718 -23.67395 -22.67740 -21.44740 -20.11648 -19.68041 -19.18304 -18.23402 -18.17977 -17.81012 -17.07381 -16.91960 -16.73010 -16.39315 -15.93062 -15.92095 -15.49618 -15.37113 -15.25433 -15.09816 -14.51132 -14.46225 -14.22325 -14.11485 -13.98274 -13.77642 -13.65373 -13.31733 -13.15790 -13.02009 -12.87063 -12.71340 -12.61038 -12.45546 -12.23417 -12.20470 -12.07267 -11.95466 -11.82652 -11.61171 -11.35806 -11.24529 -11.00495 -10.98066 -9.80358 -9.59538 -9.41156 -9.05000 -7.98103 -5.28822 1.42195 1.44060 1.46531 1.52983 1.56935 1.96379 2.03724 2.52494 2.62538 3.34859 3.44020 3.52695 3.74100 3.79151 3.89362 3.92924 3.97589 4.14405 4.20129 4.31529 4.34050 4.36405 4.39765 4.45827 4.49236 4.53562 4.56467 4.63161 4.65646 4.71544 4.76084 4.84726 4.88897 4.91198 4.92842 5.01544 5.08187 5.14710 5.24284 5.31057 5.34667 5.43954 5.50476 5.51633 5.58670 5.69251 6.21946 6.29035 6.46463 6.99225 7.17907 7.27644 8.04593 8.26353 9.25002 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.009781 B = 0.003212 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2861.969722 B = 8714.978309 C =10891.797689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.607 5.607 3 C 0.120 3.880 4 C 0.011 3.989 5 N -0.493 5.493 6 C 0.040 3.960 7 C 0.467 3.533 8 O -0.586 6.586 9 N -0.605 5.605 10 C 0.099 3.901 11 C -0.129 4.129 12 C -0.107 4.107 13 C -0.094 4.094 14 H 0.047 0.953 15 C 0.156 3.844 16 N -0.748 5.748 17 C -0.248 4.248 18 H 0.079 0.921 19 C -0.079 4.079 20 N -0.973 5.973 21 Si 0.977 3.023 22 H -0.274 1.274 23 H -0.297 1.297 24 H -0.275 1.275 25 C 0.129 3.871 26 C 0.032 3.968 27 C 0.516 3.484 28 O -0.601 6.601 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.051 0.949 35 H 0.120 0.880 36 H 0.135 0.865 37 H 0.153 0.847 38 H 0.121 0.879 39 H 0.090 0.910 40 H 0.057 0.943 41 H 0.111 0.889 42 H 0.070 0.930 43 H 0.078 0.922 44 H 0.024 0.976 45 H 0.026 0.974 46 H 0.369 0.631 47 H 0.250 0.750 48 H 0.068 0.932 49 H 0.045 0.955 50 H 0.066 0.934 51 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.485 12.595 -25.186 28.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.339 5.339 3 C -0.002 4.002 4 C -0.117 4.117 5 N -0.216 5.216 6 C -0.091 4.091 7 C 0.256 3.744 8 O -0.467 6.467 9 N -0.338 5.338 10 C -0.022 4.022 11 C -0.167 4.167 12 C -0.145 4.145 13 C -0.113 4.113 14 H 0.065 0.935 15 C 0.030 3.970 16 N -0.391 5.391 17 C -0.380 4.380 18 H 0.097 0.903 19 C -0.271 4.271 20 N -0.623 5.623 21 Si 0.806 3.194 22 H -0.200 1.200 23 H -0.224 1.224 24 H -0.201 1.201 25 C 0.005 3.995 26 C -0.098 4.098 27 C 0.305 3.695 28 O -0.483 6.483 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.107 0.893 32 H 0.116 0.884 33 H 0.114 0.886 34 H 0.069 0.931 35 H 0.138 0.862 36 H 0.152 0.848 37 H 0.171 0.829 38 H 0.139 0.861 39 H 0.108 0.892 40 H 0.076 0.924 41 H 0.130 0.870 42 H 0.088 0.912 43 H 0.096 0.904 44 H 0.042 0.958 45 H 0.044 0.956 46 H 0.201 0.799 47 H 0.058 0.942 48 H 0.087 0.913 49 H 0.064 0.936 50 H 0.084 0.916 51 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 2.694 12.174 -25.162 28.082 hybrid contribution -0.492 -0.791 2.629 2.789 sum 2.202 11.383 -22.532 25.340 Atomic orbital electron populations 1.21867 0.78573 1.03615 1.03255 1.47486 1.08283 1.06612 1.71511 1.21790 0.91154 0.83427 1.03795 1.22939 0.95274 0.95976 0.97465 1.63138 1.03441 1.02486 1.52581 1.22687 0.88748 1.08478 0.89144 1.22893 0.82116 0.75573 0.93825 1.90704 1.46891 1.52084 1.57029 1.48482 1.06665 1.71060 1.07577 1.22191 0.87753 0.99604 0.92657 1.21923 1.00540 0.98262 0.95951 1.21518 0.95309 1.03152 0.94563 1.21598 0.97622 0.97146 0.94969 0.93482 1.20863 0.89663 0.97443 0.89053 1.42670 1.06486 1.86242 1.03687 1.19647 0.94126 1.39519 0.84686 0.90277 1.25673 0.95151 1.03383 1.02915 1.69871 0.99301 1.57431 1.35724 0.85157 0.76248 0.78356 0.79678 1.20003 1.22384 1.20057 1.21373 0.98425 0.97663 0.82049 1.22319 0.89804 0.94844 1.02872 1.20403 0.90998 0.83249 0.74818 1.90669 1.67814 1.36340 1.53467 0.91690 0.90828 0.89304 0.88377 0.88592 0.93125 0.86239 0.84753 0.82936 0.86115 0.89172 0.92369 0.87038 0.91153 0.90380 0.95849 0.95583 0.79897 0.94185 0.91336 0.93617 0.91648 0.86149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.35 10.55 127.77 1.35 2.70 16 2 N -0.61 -14.35 3.23 -849.82 -2.74 -17.09 16 3 C 0.12 1.93 6.65 86.53 0.58 2.50 16 4 C 0.01 0.21 4.92 86.31 0.43 0.64 16 5 N -0.49 -9.30 4.94 -905.09 -4.47 -13.77 16 6 C 0.04 0.56 4.19 85.56 0.36 0.92 16 7 C 0.47 11.78 7.02 87.66 0.62 12.40 16 8 O -0.59 -21.75 11.07 -3.02 -0.03 -21.79 16 9 N -0.61 -13.99 2.97 -818.11 -2.43 -16.41 16 10 C 0.10 1.14 6.34 86.36 0.55 1.69 16 11 C -0.13 -1.67 6.08 30.67 0.19 -1.48 16 12 C -0.11 -2.17 5.16 30.62 0.16 -2.01 16 13 C -0.09 -2.97 2.38 -10.58 -0.03 -2.99 16 14 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 15 C 0.16 6.32 5.65 86.38 0.49 6.81 16 16 N -0.75 -40.30 5.38 -343.45 -1.85 -42.15 16 17 C -0.25 -14.50 9.99 84.03 0.84 -13.66 16 18 H 0.08 4.36 7.83 -2.91 -0.02 4.33 16 19 C -0.08 -4.80 5.50 84.86 0.47 -4.33 16 20 N -0.97 -63.81 13.06 21.65 0.28 -63.53 16 21 Si 0.98 48.10 29.55 68.60 2.03 50.13 16 22 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 23 H -0.30 -14.83 7.11 99.48 0.71 -14.13 16 24 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 25 C 0.13 4.19 5.54 86.50 0.48 4.67 16 26 C 0.03 0.86 5.35 85.42 0.46 1.31 16 27 C 0.52 15.88 7.57 87.68 0.66 16.54 16 28 O -0.60 -23.20 16.07 -3.02 -0.05 -23.24 16 29 H 0.06 1.63 6.67 -2.39 -0.02 1.61 16 30 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 31 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.10 1.23 8.12 -2.38 -0.02 1.21 16 34 H 0.05 1.46 5.51 -2.39 -0.01 1.45 16 35 H 0.12 1.55 8.06 -2.39 -0.02 1.53 16 36 H 0.13 1.26 7.67 -2.39 -0.02 1.24 16 37 H 0.15 0.94 7.94 -2.39 -0.02 0.92 16 38 H 0.12 0.52 5.93 -2.39 -0.01 0.50 16 39 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.08 1.39 8.14 -2.39 -0.02 1.38 16 44 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.37 21.91 6.92 -92.71 -0.64 21.27 16 47 H 0.25 15.94 8.31 -92.71 -0.77 15.17 16 48 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 49 H 0.05 2.03 6.23 -2.39 -0.01 2.01 16 50 H 0.07 2.26 5.79 -2.39 -0.01 2.24 16 51 H 0.12 2.81 8.14 -2.39 -0.02 2.79 16 Total: -1.00 -88.54 391.32 -1.39 -89.93 By element: Atomic # 1 Polarization: 31.92 SS G_CDS: 0.29 Total: 32.21 kcal Atomic # 6 Polarization: 18.14 SS G_CDS: 7.58 Total: 25.72 kcal Atomic # 7 Polarization: -141.75 SS G_CDS: -11.20 Total: -152.95 kcal Atomic # 8 Polarization: -44.95 SS G_CDS: -0.08 Total: -45.03 kcal Atomic # 14 Polarization: 48.10 SS G_CDS: 2.03 Total: 50.13 kcal Total: -88.54 -1.39 -89.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265615419.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.630 kcal (2) G-P(sol) polarization free energy of solvation -88.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds