Wall clock time and date at job start Sat Apr 11 2020 05:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47126 * 2 1 4 4 C 1.53006 * 109.47185 * 240.00080 * 2 1 3 5 5 N 1.46493 * 109.47441 * 185.00135 * 4 2 1 6 6 C 1.34776 * 120.00214 * 180.02562 * 5 4 2 7 7 O 1.21278 * 119.99948 * 359.97438 * 6 5 4 8 8 C 1.50700 * 120.00079 * 180.02562 * 6 5 4 9 9 H 1.09002 * 109.58135 * 60.25659 * 8 6 5 10 10 C 1.53144 * 109.57710 * 299.99745 * 8 6 5 11 11 N 1.46904 * 109.37013 * 240.18742 * 10 8 6 12 12 C 1.46948 * 111.05535 * 62.00522 * 11 10 8 13 13 C 1.53119 * 109.35160 * 298.04247 * 12 11 10 14 14 C 1.53384 * 109.58173 * 180.65798 * 8 6 5 15 15 C 1.53382 * 108.60075 * 178.76841 * 14 8 6 16 16 C 1.46943 * 111.05835 * 298.00951 * 11 10 8 17 17 N 1.46898 * 109.47180 * 120.00462 * 2 1 3 18 18 C 1.46903 * 110.99849 * 274.99846 * 17 2 1 19 19 C 1.50694 * 109.47066 * 179.97438 * 18 17 2 20 20 O 1.21297 * 120.00199 * 359.97438 * 19 18 17 21 21 N 1.34784 * 119.99988 * 180.02562 * 19 18 17 22 22 C 1.37096 * 119.99735 * 179.72439 * 21 19 18 23 23 H 1.07998 * 120.00618 * 0.02562 * 22 21 19 24 24 C 1.38955 * 119.99464 * 179.97438 * 22 21 19 25 25 N 1.31415 * 119.99620 * 179.97438 * 24 22 21 26 26 Si 1.86801 * 120.00237 * 0.02562 * 24 22 21 27 27 H 1.48501 * 109.46896 * 89.99788 * 26 24 22 28 28 H 1.48497 * 109.46972 * 209.99368 * 26 24 22 29 29 H 1.48494 * 109.47103 * 329.99983 * 26 24 22 30 30 H 1.09001 * 109.47414 * 300.00074 * 1 2 3 31 31 H 1.09002 * 109.47437 * 59.99843 * 1 2 3 32 32 H 1.08998 * 109.47393 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47017 * 305.00655 * 4 2 1 34 34 H 1.09003 * 109.46733 * 65.00075 * 4 2 1 35 35 H 0.97002 * 120.00064 * 359.97438 * 5 4 2 36 36 H 1.09006 * 109.48971 * 0.15537 * 10 8 6 37 37 H 1.08999 * 109.49157 * 120.21737 * 10 8 6 38 38 H 1.08998 * 109.48954 * 58.00972 * 12 11 10 39 39 H 1.09002 * 109.48836 * 178.07912 * 12 11 10 40 40 H 1.08997 * 109.58023 * 240.12670 * 13 12 11 41 41 H 1.08998 * 109.57513 * 119.74029 * 13 12 11 42 42 H 1.09004 * 110.10696 * 299.40973 * 14 8 6 43 43 H 1.09003 * 109.58043 * 181.19119 * 15 14 8 44 44 H 1.09004 * 109.57380 * 60.81028 * 15 14 8 45 45 H 1.09008 * 109.48868 * 181.92625 * 16 11 10 46 46 H 1.09003 * 109.48856 * 301.96909 * 16 11 10 47 47 H 1.00899 * 111.00040 * 38.95265 * 17 2 1 48 48 H 1.08998 * 109.46809 * 60.00017 * 18 17 2 49 49 H 1.09002 * 109.47056 * 299.99758 * 18 17 2 50 50 H 0.97000 * 119.99339 * 0.02562 * 21 19 18 51 51 H 0.97000 * 119.99478 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 3.5000 -0.8264 -1.1907 6 6 4.1730 -1.4283 -2.1913 7 8 3.5699 -1.8833 -3.1400 8 6 5.6748 -1.5370 -2.1307 9 1 5.9647 -2.1044 -1.2462 10 6 6.2885 -0.1355 -2.0650 11 7 7.1653 0.0674 -3.2262 12 6 6.4060 -0.0135 -4.4816 13 6 5.7950 -1.4111 -4.6159 14 6 6.1903 -2.2445 -3.3902 15 6 7.7209 -2.3154 -3.3198 16 6 8.2779 -0.8925 -3.2217 17 7 2.0196 -0.6926 1.1994 18 6 2.0824 0.2225 2.3469 19 6 2.5873 -0.5220 3.5559 20 8 2.8668 -1.6992 3.4703 21 7 2.7273 0.1200 4.7327 22 6 3.1812 -0.5587 5.8340 23 1 3.4270 -1.6076 5.7586 24 6 3.3260 0.1034 7.0471 25 7 3.7606 -0.5473 8.1029 26 14 2.9015 1.9178 7.1775 27 1 1.4718 2.0661 7.5507 28 1 3.7525 2.5519 8.2162 29 1 3.1426 2.5778 5.8693 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6053 -1.7198 -1.2953 34 1 1.7516 -0.1582 -2.1370 35 1 3.9824 -0.4622 -0.4320 36 1 5.4937 0.6104 -2.0749 37 1 6.8700 -0.0356 -1.1485 38 1 5.6108 0.7319 -4.4744 39 1 7.0732 0.1741 -5.3229 40 1 6.1722 -1.8894 -5.5197 41 1 4.7092 -1.3315 -4.6685 42 1 5.7710 -3.2487 -3.4541 43 1 8.1060 -2.7972 -4.2185 44 1 8.0200 -2.8861 -2.4406 45 1 8.9298 -0.6975 -4.0734 46 1 8.8458 -0.7866 -2.2974 47 1 1.4495 -1.4980 1.4099 48 1 1.0871 0.6161 2.5525 49 1 2.7589 1.0461 2.1182 50 1 2.5027 1.0612 4.8014 51 1 3.8613 -0.0852 8.9498 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266939581.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:31:21 Heat of formation + Delta-G solvation = -64.142038 kcal Electronic energy + Delta-G solvation = -30171.097128 eV Core-core repulsion = 26104.957691 eV Total energy + Delta-G solvation = -4066.139436 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.41898 -39.12875 -38.53287 -37.00870 -34.27618 -33.87331 -32.42551 -31.85996 -31.65512 -31.12737 -30.61448 -26.74875 -26.36038 -24.02288 -23.63618 -23.22650 -23.09597 -21.11662 -20.36497 -19.46146 -18.46149 -17.78114 -17.37508 -16.80274 -16.60486 -16.15916 -15.90347 -15.69089 -15.19602 -15.07387 -14.85981 -14.52191 -13.96219 -13.45140 -13.29733 -13.25754 -13.14607 -13.05775 -12.88058 -12.67983 -12.46020 -12.42403 -12.39905 -12.34012 -12.15834 -12.02510 -11.80331 -11.69716 -11.58125 -11.22375 -11.21428 -11.09119 -10.64117 -10.57873 -10.40645 -10.02203 -9.62299 -9.60297 -9.00071 -8.68158 -8.46276 -8.28184 -8.21855 -6.35671 -3.87400 2.63670 2.98307 3.02510 3.11509 3.16097 3.67788 3.72671 3.96914 4.06087 4.27559 4.42208 4.62903 4.66411 4.76703 4.80561 4.88754 4.92416 4.94002 4.99274 5.03670 5.09286 5.16628 5.17115 5.24069 5.38206 5.40948 5.48582 5.53309 5.54789 5.61670 5.62427 5.72287 5.73399 5.77826 5.82802 5.86300 5.87097 5.93995 5.96966 5.99121 6.19121 6.49519 6.79706 6.81412 6.96652 7.44543 7.52993 7.57696 8.09413 8.25490 8.54465 8.90154 9.37350 9.76970 10.77385 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.013305 B = 0.002483 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.998667 B =11274.382254 C =12442.612701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.068 3.932 3 H 0.084 0.916 4 C 0.135 3.865 5 N -0.711 5.711 6 C 0.520 3.480 7 O -0.547 6.547 8 C -0.142 4.142 9 H 0.103 0.897 10 C 0.062 3.938 11 N -0.528 5.528 12 C 0.052 3.948 13 C -0.159 4.159 14 C -0.064 4.064 15 C -0.152 4.152 16 C 0.051 3.949 17 N -0.663 5.663 18 C 0.047 3.953 19 C 0.448 3.552 20 O -0.564 6.564 21 N -0.590 5.590 22 C -0.306 4.306 23 H 0.119 0.881 24 C 0.042 3.958 25 N -0.880 5.880 26 Si 0.880 3.120 27 H -0.271 1.271 28 H -0.276 1.276 29 H -0.269 1.269 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.410 0.590 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.060 0.940 41 H 0.094 0.906 42 H 0.082 0.918 43 H 0.068 0.932 44 H 0.068 0.932 45 H 0.075 0.925 46 H 0.077 0.923 47 H 0.355 0.645 48 H 0.046 0.954 49 H 0.087 0.913 50 H 0.370 0.630 51 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.022 5.022 -23.516 24.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.043 4.043 3 H 0.102 0.898 4 C 0.010 3.990 5 N -0.362 5.362 6 C 0.306 3.694 7 O -0.426 6.426 8 C -0.165 4.165 9 H 0.121 0.879 10 C -0.068 4.068 11 N -0.247 5.247 12 C -0.077 4.077 13 C -0.198 4.198 14 C -0.084 4.084 15 C -0.191 4.191 16 C -0.077 4.077 17 N -0.296 5.296 18 C -0.086 4.086 19 C 0.234 3.766 20 O -0.446 6.446 21 N -0.229 5.229 22 C -0.435 4.435 23 H 0.137 0.863 24 C -0.162 4.162 25 N -0.520 5.520 26 Si 0.706 3.294 27 H -0.197 1.197 28 H -0.201 1.201 29 H -0.195 1.195 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.245 0.755 36 H 0.098 0.902 37 H 0.106 0.894 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.079 0.921 41 H 0.112 0.888 42 H 0.101 0.899 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.094 0.906 46 H 0.096 0.904 47 H 0.175 0.825 48 H 0.064 0.936 49 H 0.105 0.895 50 H 0.203 0.797 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.717 4.488 -24.121 24.685 hybrid contribution -1.437 0.812 1.024 1.943 sum 1.280 5.301 -23.097 23.732 Atomic orbital electron populations 1.22436 0.96224 1.02803 1.02593 1.21858 0.93395 0.98286 0.90732 0.89798 1.21301 0.80410 1.00842 0.96462 1.45826 1.07600 1.59382 1.23413 1.20462 0.89505 0.77283 0.82113 1.90607 1.70320 1.48207 1.33447 1.22110 0.92563 1.00551 1.01234 0.87939 1.22247 0.96518 0.93344 0.94649 1.62520 1.10508 1.49229 1.02482 1.22222 0.97247 0.96392 0.91803 1.22454 1.03921 0.96157 0.97263 1.20871 0.94615 0.99523 0.93360 1.22313 0.95442 0.98746 1.02604 1.22229 0.93386 0.89291 1.02837 1.60172 1.57855 1.09154 1.02433 1.21756 1.00099 0.95761 0.90983 1.19698 0.84898 0.88266 0.83760 1.90579 1.53856 1.15964 1.84235 1.42211 1.60167 1.11023 1.09492 1.19424 1.40640 0.97810 0.85584 0.86296 1.25050 0.97426 0.98421 0.95254 1.69624 1.45036 1.36596 1.00759 0.86668 0.79259 0.84917 0.78513 1.19682 1.20142 1.19461 0.91980 0.91820 0.91910 0.91610 0.91506 0.75462 0.90194 0.89438 0.90972 0.90840 0.92123 0.88802 0.89918 0.91361 0.91368 0.90641 0.90410 0.82484 0.93591 0.89489 0.79711 0.91569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.56 9.16 37.16 0.34 -1.22 16 2 C 0.07 0.67 2.75 -67.71 -0.19 0.48 16 3 H 0.08 0.75 7.80 -51.93 -0.40 0.35 16 4 C 0.13 1.42 5.37 -4.04 -0.02 1.40 16 5 N -0.71 -7.93 5.13 -60.30 -0.31 -8.24 16 6 C 0.52 6.38 6.59 -10.99 -0.07 6.31 16 7 O -0.55 -8.24 13.76 5.56 0.08 -8.16 16 8 C -0.14 -1.45 2.60 -91.50 -0.24 -1.69 16 9 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 10 C 0.06 0.57 5.60 -3.75 -0.02 0.55 16 11 N -0.53 -4.90 5.22 -234.29 -1.22 -6.12 16 12 C 0.05 0.47 6.09 -3.74 -0.02 0.45 16 13 C -0.16 -1.59 5.43 -26.46 -0.14 -1.74 16 14 C -0.06 -0.65 2.59 -90.02 -0.23 -0.88 16 15 C -0.15 -1.25 5.75 -26.47 -0.15 -1.41 16 16 C 0.05 0.41 6.09 -3.74 -0.02 0.39 16 17 N -0.66 -8.80 5.32 -107.99 -0.57 -9.37 16 18 C 0.05 0.68 5.96 -4.98 -0.03 0.65 16 19 C 0.45 9.53 7.82 -10.98 -0.09 9.45 16 20 O -0.56 -14.45 15.78 5.54 0.09 -14.36 16 21 N -0.59 -13.42 5.09 -10.96 -0.06 -13.48 16 22 C -0.31 -8.43 10.16 -14.93 -0.15 -8.58 16 23 H 0.12 3.77 7.39 -52.49 -0.39 3.38 16 24 C 0.04 1.12 5.50 -17.46 -0.10 1.02 16 25 N -0.88 -25.31 13.96 55.50 0.77 -24.54 16 26 Si 0.88 18.84 27.73 -169.99 -4.71 14.13 16 27 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 28 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 29 H -0.27 -5.20 6.52 56.52 0.37 -4.83 16 30 H 0.06 0.55 7.45 -51.93 -0.39 0.16 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.41 4.44 8.04 -40.82 -0.33 4.11 16 36 H 0.08 0.75 7.45 -51.93 -0.39 0.36 16 37 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.09 1.15 5.59 -51.93 -0.29 0.86 16 42 H 0.08 0.94 8.12 -51.93 -0.42 0.52 16 43 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 45 H 0.08 0.55 8.14 -51.92 -0.42 0.13 16 46 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 47 H 0.35 5.19 8.17 -39.29 -0.32 4.87 16 48 H 0.05 0.59 7.44 -51.93 -0.39 0.20 16 49 H 0.09 1.11 8.06 -51.93 -0.42 0.69 16 50 H 0.37 7.36 5.77 -40.82 -0.24 7.13 16 51 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 395.61 15.07 5.96 5.96 Total: -1.00 -32.57 395.61 -9.74 -42.31 By element: Atomic # 1 Polarization: 25.31 SS G_CDS: -8.63 Total: 16.68 kcal Atomic # 6 Polarization: 6.32 SS G_CDS: -1.14 Total: 5.19 kcal Atomic # 7 Polarization: -60.36 SS G_CDS: -1.39 Total: -61.75 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: 0.16 Total: -22.52 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -4.71 Total: 14.13 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.57 -9.74 -42.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266939581.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.831 kcal (2) G-P(sol) polarization free energy of solvation -32.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds