Wall clock time and date at job start Sat Apr 11 2020 05:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47126 * 2 1 4 4 C 1.53006 * 109.47185 * 240.00080 * 2 1 3 5 5 N 1.46493 * 109.47441 * 185.00135 * 4 2 1 6 6 C 1.34776 * 120.00214 * 180.02562 * 5 4 2 7 7 O 1.21278 * 119.99948 * 359.97438 * 6 5 4 8 8 C 1.50700 * 120.00079 * 180.02562 * 6 5 4 9 9 H 1.09002 * 109.58135 * 60.25659 * 8 6 5 10 10 C 1.53144 * 109.57710 * 299.99745 * 8 6 5 11 11 N 1.46904 * 109.37013 * 240.18742 * 10 8 6 12 12 C 1.46948 * 111.05535 * 62.00522 * 11 10 8 13 13 C 1.53119 * 109.35160 * 298.04247 * 12 11 10 14 14 C 1.53384 * 109.58173 * 180.65798 * 8 6 5 15 15 C 1.53382 * 108.60075 * 178.76841 * 14 8 6 16 16 C 1.46943 * 111.05835 * 298.00951 * 11 10 8 17 17 N 1.46898 * 109.47180 * 120.00462 * 2 1 3 18 18 C 1.46903 * 110.99849 * 274.99846 * 17 2 1 19 19 C 1.50694 * 109.47066 * 179.97438 * 18 17 2 20 20 O 1.21297 * 120.00199 * 359.97438 * 19 18 17 21 21 N 1.34784 * 119.99988 * 180.02562 * 19 18 17 22 22 C 1.37096 * 119.99735 * 179.72439 * 21 19 18 23 23 H 1.07998 * 120.00618 * 0.02562 * 22 21 19 24 24 C 1.38955 * 119.99464 * 179.97438 * 22 21 19 25 25 N 1.31415 * 119.99620 * 179.97438 * 24 22 21 26 26 Si 1.86801 * 120.00237 * 0.02562 * 24 22 21 27 27 H 1.48501 * 109.46896 * 89.99788 * 26 24 22 28 28 H 1.48497 * 109.46972 * 209.99368 * 26 24 22 29 29 H 1.48494 * 109.47103 * 329.99983 * 26 24 22 30 30 H 1.09001 * 109.47414 * 300.00074 * 1 2 3 31 31 H 1.09002 * 109.47437 * 59.99843 * 1 2 3 32 32 H 1.08998 * 109.47393 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47017 * 305.00655 * 4 2 1 34 34 H 1.09003 * 109.46733 * 65.00075 * 4 2 1 35 35 H 0.97002 * 120.00064 * 359.97438 * 5 4 2 36 36 H 1.09006 * 109.48971 * 0.15537 * 10 8 6 37 37 H 1.08999 * 109.49157 * 120.21737 * 10 8 6 38 38 H 1.08998 * 109.48954 * 58.00972 * 12 11 10 39 39 H 1.09002 * 109.48836 * 178.07912 * 12 11 10 40 40 H 1.08997 * 109.58023 * 240.12670 * 13 12 11 41 41 H 1.08998 * 109.57513 * 119.74029 * 13 12 11 42 42 H 1.09004 * 110.10696 * 299.40973 * 14 8 6 43 43 H 1.09003 * 109.58043 * 181.19119 * 15 14 8 44 44 H 1.09004 * 109.57380 * 60.81028 * 15 14 8 45 45 H 1.09008 * 109.48868 * 181.92625 * 16 11 10 46 46 H 1.09003 * 109.48856 * 301.96909 * 16 11 10 47 47 H 1.00899 * 111.00040 * 38.95265 * 17 2 1 48 48 H 1.08998 * 109.46809 * 60.00017 * 18 17 2 49 49 H 1.09002 * 109.47056 * 299.99758 * 18 17 2 50 50 H 0.97000 * 119.99339 * 0.02562 * 21 19 18 51 51 H 0.97000 * 119.99478 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 3.5000 -0.8264 -1.1907 6 6 4.1730 -1.4283 -2.1913 7 8 3.5699 -1.8833 -3.1400 8 6 5.6748 -1.5370 -2.1307 9 1 5.9647 -2.1044 -1.2462 10 6 6.2885 -0.1355 -2.0650 11 7 7.1653 0.0674 -3.2262 12 6 6.4060 -0.0135 -4.4816 13 6 5.7950 -1.4111 -4.6159 14 6 6.1903 -2.2445 -3.3902 15 6 7.7209 -2.3154 -3.3198 16 6 8.2779 -0.8925 -3.2217 17 7 2.0196 -0.6926 1.1994 18 6 2.0824 0.2225 2.3469 19 6 2.5873 -0.5220 3.5559 20 8 2.8668 -1.6992 3.4703 21 7 2.7273 0.1200 4.7327 22 6 3.1812 -0.5587 5.8340 23 1 3.4270 -1.6076 5.7586 24 6 3.3260 0.1034 7.0471 25 7 3.7606 -0.5473 8.1029 26 14 2.9015 1.9178 7.1775 27 1 1.4718 2.0661 7.5507 28 1 3.7525 2.5519 8.2162 29 1 3.1426 2.5778 5.8693 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6053 -1.7198 -1.2953 34 1 1.7516 -0.1582 -2.1370 35 1 3.9824 -0.4622 -0.4320 36 1 5.4937 0.6104 -2.0749 37 1 6.8700 -0.0356 -1.1485 38 1 5.6108 0.7319 -4.4744 39 1 7.0732 0.1741 -5.3229 40 1 6.1722 -1.8894 -5.5197 41 1 4.7092 -1.3315 -4.6685 42 1 5.7710 -3.2487 -3.4541 43 1 8.1060 -2.7972 -4.2185 44 1 8.0200 -2.8861 -2.4406 45 1 8.9298 -0.6975 -4.0734 46 1 8.8458 -0.7866 -2.2974 47 1 1.4495 -1.4980 1.4099 48 1 1.0871 0.6161 2.5525 49 1 2.7589 1.0461 2.1182 50 1 2.5027 1.0612 4.8014 51 1 3.8613 -0.0852 8.9498 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266939581.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:31:20 Heat of formation + Delta-G solvation = -91.354447 kcal Electronic energy + Delta-G solvation = -30172.277146 eV Core-core repulsion = 26104.957691 eV Total energy + Delta-G solvation = -4067.319455 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.22798 -40.38603 -39.83422 -38.09806 -35.99844 -35.09835 -33.73305 -33.20620 -32.65020 -31.83573 -31.55391 -28.07785 -27.36945 -25.49099 -24.59336 -23.97742 -23.80603 -21.98441 -21.28725 -21.24776 -20.28571 -18.65702 -18.20128 -17.77988 -17.54489 -17.32316 -17.01152 -16.69177 -16.56805 -16.30331 -16.02475 -15.60620 -15.30655 -14.87289 -14.52739 -14.38930 -14.15439 -13.96416 -13.93160 -13.72304 -13.60163 -13.42042 -13.16384 -13.13263 -13.11590 -13.01769 -12.85796 -12.76573 -12.50730 -12.49129 -12.39491 -11.98380 -11.97003 -11.88165 -11.49052 -11.35000 -11.11802 -10.54184 -10.41073 -10.22883 -9.94812 -9.34399 -9.20507 -8.39705 -6.00495 1.31744 1.37174 1.46305 1.67181 1.99339 2.24666 2.27808 2.72998 3.02248 3.17385 3.40519 3.49863 3.66066 3.85299 3.86641 4.02557 4.09062 4.12385 4.22456 4.23164 4.28219 4.33637 4.34775 4.40784 4.47578 4.49265 4.59141 4.63252 4.66960 4.78240 4.83104 4.89434 4.95928 5.00055 5.02185 5.09230 5.14027 5.19403 5.20271 5.26864 5.39000 5.54433 5.59590 5.92294 6.05588 6.07956 6.12549 6.34253 6.61599 6.64703 6.90748 7.31423 7.42670 7.99874 8.78055 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.013305 B = 0.002483 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.998667 B =11274.382254 C =12442.612701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.079 3.921 3 H 0.106 0.894 4 C 0.135 3.865 5 N -0.706 5.706 6 C 0.516 3.484 7 O -0.579 6.579 8 C -0.138 4.138 9 H 0.102 0.898 10 C 0.066 3.934 11 N -0.532 5.532 12 C 0.055 3.945 13 C -0.154 4.154 14 C -0.068 4.068 15 C -0.146 4.146 16 C 0.051 3.949 17 N -0.678 5.678 18 C 0.062 3.938 19 C 0.449 3.551 20 O -0.615 6.615 21 N -0.591 5.591 22 C -0.327 4.327 23 H 0.054 0.946 24 C -0.017 4.017 25 N -0.937 5.937 26 Si 0.965 3.035 27 H -0.259 1.259 28 H -0.278 1.278 29 H -0.227 1.227 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.053 0.947 33 H 0.047 0.953 34 H 0.076 0.924 35 H 0.413 0.587 36 H 0.079 0.921 37 H 0.096 0.904 38 H 0.067 0.933 39 H 0.087 0.913 40 H 0.067 0.933 41 H 0.069 0.931 42 H 0.062 0.938 43 H 0.076 0.924 44 H 0.069 0.931 45 H 0.087 0.913 46 H 0.084 0.916 47 H 0.344 0.656 48 H 0.078 0.922 49 H 0.120 0.880 50 H 0.390 0.610 51 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.741 8.777 -24.931 26.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.031 4.031 3 H 0.124 0.876 4 C 0.011 3.989 5 N -0.356 5.356 6 C 0.303 3.697 7 O -0.460 6.460 8 C -0.161 4.161 9 H 0.120 0.880 10 C -0.064 4.064 11 N -0.251 5.251 12 C -0.073 4.073 13 C -0.193 4.193 14 C -0.088 4.088 15 C -0.185 4.185 16 C -0.078 4.078 17 N -0.310 5.310 18 C -0.070 4.070 19 C 0.237 3.763 20 O -0.499 6.499 21 N -0.233 5.233 22 C -0.456 4.456 23 H 0.072 0.928 24 C -0.215 4.215 25 N -0.577 5.577 26 Si 0.785 3.215 27 H -0.183 1.183 28 H -0.203 1.203 29 H -0.150 1.150 30 H 0.085 0.915 31 H 0.099 0.901 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.094 0.906 35 H 0.249 0.751 36 H 0.098 0.902 37 H 0.115 0.885 38 H 0.086 0.914 39 H 0.106 0.894 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.081 0.919 43 H 0.095 0.905 44 H 0.088 0.912 45 H 0.106 0.894 46 H 0.102 0.898 47 H 0.163 0.837 48 H 0.096 0.904 49 H 0.138 0.862 50 H 0.225 0.775 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.429 8.267 -25.562 26.975 hybrid contribution -1.354 -0.534 1.397 2.018 sum 1.075 7.733 -24.164 25.394 Atomic orbital electron populations 1.22393 0.94954 1.02668 1.03640 1.21858 0.94285 0.98574 0.88413 0.87644 1.21334 0.79976 1.00156 0.97451 1.45842 1.07933 1.58792 1.23075 1.20835 0.90352 0.76771 0.81765 1.90597 1.71108 1.49603 1.34702 1.22118 0.91237 1.01493 1.01261 0.88031 1.22247 0.96625 0.92305 0.95187 1.62551 1.10632 1.49595 1.02358 1.22211 0.97390 0.95376 0.92335 1.22368 1.02372 0.97046 0.97506 1.20868 0.95990 0.98461 0.93432 1.22275 0.93780 0.99280 1.03155 1.22306 0.93099 0.88573 1.03774 1.60145 1.58629 1.09157 1.03048 1.21685 1.02027 0.95357 0.87899 1.21049 0.82383 0.87932 0.84959 1.90563 1.55302 1.18763 1.85282 1.42033 1.60774 1.11788 1.08729 1.18988 1.42559 0.95848 0.88213 0.92809 1.26134 0.96442 1.05037 0.93903 1.69814 1.46572 1.39618 1.01742 0.85362 0.79249 0.76521 0.80368 1.18337 1.20314 1.15020 0.91526 0.90096 0.92745 0.93490 0.90568 0.75097 0.90217 0.88536 0.91395 0.89440 0.91475 0.91283 0.91903 0.90513 0.91186 0.89436 0.89770 0.83664 0.90434 0.86227 0.77455 0.91229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.53 9.16 71.98 0.66 -1.87 16 2 C 0.08 1.32 2.75 44.92 0.12 1.44 16 3 H 0.11 1.39 7.80 -2.39 -0.02 1.38 16 4 C 0.14 2.69 5.37 86.38 0.46 3.15 16 5 N -0.71 -15.13 5.13 -463.07 -2.38 -17.50 16 6 C 0.52 12.66 6.59 87.66 0.58 13.23 16 7 O -0.58 -17.86 13.76 -3.02 -0.04 -17.90 16 8 C -0.14 -2.79 2.60 -11.36 -0.03 -2.82 16 9 H 0.10 2.05 8.14 -2.39 -0.02 2.04 16 10 C 0.07 1.12 5.60 86.35 0.48 1.60 16 11 N -0.53 -8.89 5.22 -895.16 -4.67 -13.56 16 12 C 0.06 0.93 6.09 86.33 0.53 1.45 16 13 C -0.15 -3.04 5.43 30.77 0.17 -2.87 16 14 C -0.07 -1.36 2.59 -10.40 -0.03 -1.39 16 15 C -0.15 -2.23 5.75 30.76 0.18 -2.05 16 16 C 0.05 0.71 6.09 86.34 0.53 1.24 16 17 N -0.68 -16.62 5.32 -495.58 -2.63 -19.26 16 18 C 0.06 1.61 5.96 85.55 0.51 2.12 16 19 C 0.45 18.75 7.82 87.65 0.69 19.43 16 20 O -0.61 -32.42 15.78 -3.08 -0.05 -32.47 16 21 N -0.59 -26.35 5.09 -306.97 -1.56 -27.91 16 22 C -0.33 -18.62 10.16 84.04 0.85 -17.77 16 23 H 0.05 3.69 7.39 -2.91 -0.02 3.67 16 24 C -0.02 -0.91 5.50 84.93 0.47 -0.44 16 25 N -0.94 -55.80 13.96 21.67 0.30 -55.49 16 26 Si 0.97 37.46 27.73 68.60 1.90 39.37 16 27 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 28 H -0.28 -10.85 7.11 99.48 0.71 -10.14 16 29 H -0.23 -7.22 6.52 99.48 0.65 -6.57 16 30 H 0.07 0.92 7.45 -2.39 -0.02 0.90 16 31 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.05 0.88 8.13 -2.39 -0.02 0.86 16 33 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.41 8.34 8.04 -92.71 -0.75 7.59 16 36 H 0.08 1.36 7.45 -2.38 -0.02 1.34 16 37 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.07 1.19 8.14 -2.39 -0.02 1.18 16 39 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.07 1.74 5.59 -2.39 -0.01 1.72 16 42 H 0.06 1.49 8.12 -2.38 -0.02 1.47 16 43 H 0.08 1.04 8.14 -2.39 -0.02 1.03 16 44 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 45 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 46 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 47 H 0.34 9.82 8.17 -89.69 -0.73 9.08 16 48 H 0.08 1.60 7.44 -2.39 -0.02 1.58 16 49 H 0.12 2.41 8.06 -2.39 -0.02 2.39 16 50 H 0.39 14.15 5.77 -92.71 -0.53 13.61 16 51 H 0.28 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -77.16 395.61 -4.09 -81.25 By element: Atomic # 1 Polarization: 50.13 SS G_CDS: -1.12 Total: 49.01 kcal Atomic # 6 Polarization: 8.31 SS G_CDS: 6.16 Total: 14.47 kcal Atomic # 7 Polarization: -122.78 SS G_CDS: -10.94 Total: -133.73 kcal Atomic # 8 Polarization: -50.28 SS G_CDS: -0.09 Total: -50.37 kcal Atomic # 14 Polarization: 37.46 SS G_CDS: 1.90 Total: 39.37 kcal Total: -77.16 -4.09 -81.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266939581.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.109 kcal (2) G-P(sol) polarization free energy of solvation -77.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds