Wall clock time and date at job start Sat Apr 11 2020 05:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.47845 * 111.00048 * 2 1 4 4 C 1.54910 * 104.79855 * 146.36135 * 3 2 1 5 5 C 1.55143 * 101.65205 * 322.92903 * 4 3 2 6 6 H 1.08999 * 110.85552 * 277.20340 * 5 4 3 7 7 C 1.52996 * 110.70395 * 154.03404 * 5 4 3 8 8 C 1.50704 * 109.46969 * 179.97438 * 7 5 4 9 9 O 1.21280 * 119.99855 * 0.02562 * 8 7 5 10 10 N 1.34776 * 119.99953 * 180.02562 * 8 7 5 11 11 C 1.46498 * 120.00010 * 180.02562 * 10 8 7 12 12 H 1.09001 * 110.90543 * 322.58705 * 11 10 8 13 13 C 1.55138 * 110.99026 * 86.45506 * 11 10 8 14 14 C 1.54321 * 103.02061 * 153.74577 * 13 11 10 15 15 N 1.47443 * 107.23033 * 337.71865 * 14 13 11 16 16 C 1.46909 * 110.99446 * 236.74081 * 15 14 13 17 17 C 1.50703 * 109.46840 * 176.64685 * 16 15 14 18 18 O 1.21293 * 120.00171 * 6.13334 * 17 16 15 19 19 N 1.34775 * 120.00186 * 186.12614 * 17 16 15 20 20 C 1.37094 * 120.00371 * 180.02562 * 19 17 16 21 21 H 1.08001 * 119.99670 * 359.97438 * 20 19 17 22 22 C 1.38952 * 120.00077 * 180.02562 * 20 19 17 23 23 N 1.31409 * 119.99969 * 179.97438 * 22 20 19 24 24 Si 1.86791 * 119.99989 * 359.97438 * 22 20 19 25 25 H 1.48505 * 109.47254 * 90.00596 * 24 22 20 26 26 H 1.48504 * 109.47376 * 210.00480 * 24 22 20 27 27 H 1.48505 * 109.47438 * 330.00562 * 24 22 20 28 28 C 1.47845 * 108.56906 * 359.00732 * 15 14 13 29 29 C 1.47447 * 110.99873 * 120.83715 * 2 1 3 30 30 H 1.09001 * 109.47137 * 299.15964 * 1 2 3 31 31 H 1.08996 * 109.47192 * 59.16031 * 1 2 3 32 32 H 1.08999 * 109.46852 * 179.16251 * 1 2 3 33 33 H 1.09000 * 110.37085 * 265.19498 * 3 2 1 34 34 H 1.09000 * 110.37122 * 27.42017 * 3 2 1 35 35 H 1.08997 * 110.99106 * 204.84080 * 4 3 2 36 36 H 1.09001 * 110.98763 * 81.01715 * 4 3 2 37 37 H 1.09003 * 109.47095 * 59.94874 * 7 5 4 38 38 H 1.08998 * 109.47141 * 299.94495 * 7 5 4 39 39 H 0.97004 * 119.99839 * 0.02562 * 10 8 7 40 40 H 1.08991 * 110.70924 * 35.36436 * 13 11 10 41 41 H 1.08999 * 110.70792 * 272.12514 * 13 11 10 42 42 H 1.09005 * 109.88817 * 97.11725 * 14 13 11 43 43 H 1.08995 * 109.89229 * 218.14976 * 14 13 11 44 44 H 1.09000 * 109.47119 * 296.64796 * 16 15 14 45 45 H 1.09004 * 109.47025 * 56.65210 * 16 15 14 46 46 H 0.97002 * 119.99665 * 0.02562 * 19 17 16 47 47 H 0.96999 * 120.00166 * 179.97438 * 23 22 20 48 48 H 1.09000 * 110.37523 * 142.92951 * 28 15 14 49 49 H 1.09003 * 110.37120 * 265.15771 * 28 15 14 50 50 H 1.09003 * 109.88653 * 117.33614 * 29 2 1 51 51 H 1.09005 * 110.02392 * 356.22759 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9989 1.3802 0.0000 4 6 3.3048 1.3028 0.8297 5 6 2.9158 0.2822 1.9316 6 1 2.3752 0.7725 2.7412 7 6 4.1569 -0.4337 2.4681 8 6 3.7481 -1.4162 3.5353 9 8 2.5791 -1.5326 3.8365 10 7 4.6815 -2.1654 4.1547 11 6 4.2840 -3.1209 5.1917 12 1 3.4719 -2.7206 5.7987 13 6 3.8911 -4.4861 4.5683 14 6 4.1726 -5.4841 5.7112 15 7 5.1456 -4.8470 6.6176 16 6 6.3442 -5.6819 6.7739 17 6 7.3476 -4.9632 7.6386 18 8 7.0486 -3.9157 8.1719 19 7 8.5773 -5.4845 7.8195 20 6 9.4899 -4.8310 8.6065 21 1 9.2237 -3.8981 9.0812 22 6 10.7578 -5.3682 8.7925 23 7 11.6328 -4.7415 9.5465 24 14 11.2185 -6.9811 7.9708 25 1 11.8026 -6.7063 6.6334 26 1 12.2145 -7.6966 8.8083 27 1 10.0048 -7.8230 7.8173 28 6 5.4936 -3.5166 6.0747 29 6 1.9974 -0.7056 1.1819 30 1 -0.3633 0.5007 0.8974 31 1 -0.3633 0.5268 -0.8823 32 1 -0.3633 -1.0276 -0.0150 33 1 2.2147 1.7038 -1.0182 34 1 1.2881 2.0595 0.4706 35 1 3.5495 2.2720 1.2640 36 1 4.1302 0.9281 0.2244 37 1 4.8441 0.2987 2.8920 38 1 4.6496 -0.9659 1.6544 39 1 5.6165 -2.0720 3.9140 40 1 4.5136 -4.7074 3.7014 41 1 2.8351 -4.4970 4.2986 42 1 3.2502 -5.7003 6.2503 43 1 4.5891 -6.4056 5.3046 44 1 6.0703 -6.6266 7.2436 45 1 6.7818 -5.8764 5.7946 46 1 8.8165 -6.3221 7.3927 47 1 12.5178 -5.1166 9.6767 48 1 5.6235 -2.7985 6.8844 49 1 6.4008 -3.5776 5.4734 50 1 2.5697 -1.5784 0.8676 51 1 1.1771 -1.0141 1.8301 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267732327.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:31:40 Heat of formation + Delta-G solvation = -54.512062 kcal Electronic energy + Delta-G solvation = -29375.645436 eV Core-core repulsion = 25309.923587 eV Total energy + Delta-G solvation = -4065.721849 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.42832 -39.46747 -38.68668 -37.56604 -34.52100 -33.93830 -33.64450 -31.75505 -31.13858 -30.20898 -28.65362 -27.52446 -26.62445 -25.22408 -24.01926 -21.73283 -21.40360 -21.13942 -20.57154 -20.11979 -19.39953 -18.32822 -17.31273 -16.79567 -16.39177 -16.16799 -15.65782 -15.36941 -15.14497 -14.96213 -14.57888 -14.40006 -14.33576 -13.87700 -13.61149 -13.57897 -13.19391 -13.08328 -13.05917 -12.99703 -12.58404 -12.34158 -12.20987 -11.94167 -11.83064 -11.79553 -11.68013 -11.55725 -11.34258 -11.32125 -11.11076 -11.03036 -10.99584 -10.78266 -10.62659 -10.01489 -9.93949 -9.59951 -9.17019 -8.65090 -8.56781 -8.23039 -8.05131 -6.35098 -3.86663 2.49604 2.94484 2.99302 3.02886 3.11947 3.68728 3.70569 4.00003 4.06707 4.18278 4.30113 4.47191 4.55290 4.62962 4.72075 4.79785 4.90786 4.99717 5.03697 5.09092 5.10805 5.15246 5.17519 5.28274 5.31161 5.34709 5.39243 5.42030 5.49935 5.54122 5.54825 5.66164 5.70486 5.73946 5.77882 5.81244 5.88259 5.96321 5.98855 6.08292 6.36902 6.41865 6.62375 6.72714 7.07386 7.12541 7.36093 7.54190 8.08658 8.09915 8.55615 8.90883 9.38014 9.78186 10.77888 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.021145 B = 0.001923 C = 0.001845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.857386 B =14553.539438 C =15171.863099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.538 5.538 3 C 0.040 3.960 4 C -0.127 4.127 5 C -0.092 4.092 6 H 0.083 0.917 7 C -0.132 4.132 8 C 0.514 3.486 9 O -0.539 6.539 10 N -0.721 5.721 11 C 0.132 3.868 12 H 0.102 0.898 13 C -0.151 4.151 14 C 0.041 3.959 15 N -0.504 5.504 16 C 0.038 3.962 17 C 0.449 3.551 18 O -0.560 6.560 19 N -0.590 5.590 20 C -0.305 4.305 21 H 0.120 0.880 22 C 0.042 3.958 23 N -0.880 5.880 24 Si 0.879 3.121 25 H -0.271 1.271 26 H -0.276 1.276 27 H -0.269 1.269 28 C 0.051 3.949 29 C 0.052 3.948 30 H 0.027 0.973 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.046 0.954 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.401 0.599 40 H 0.067 0.933 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.057 0.943 44 H 0.094 0.906 45 H 0.048 0.952 46 H 0.370 0.630 47 H 0.274 0.726 48 H 0.106 0.894 49 H 0.046 0.954 50 H 0.072 0.928 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.504 5.646 -20.487 26.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.262 5.262 3 C -0.087 4.087 4 C -0.165 4.165 5 C -0.112 4.112 6 H 0.102 0.898 7 C -0.172 4.172 8 C 0.300 3.700 9 O -0.416 6.416 10 N -0.372 5.372 11 C 0.027 3.973 12 H 0.120 0.880 13 C -0.191 4.191 14 C -0.087 4.087 15 N -0.228 5.228 16 C -0.093 4.093 17 C 0.235 3.765 18 O -0.442 6.442 19 N -0.229 5.229 20 C -0.434 4.434 21 H 0.137 0.863 22 C -0.161 4.161 23 N -0.520 5.520 24 Si 0.706 3.294 25 H -0.197 1.197 26 H -0.201 1.201 27 H -0.195 1.195 28 C -0.077 4.077 29 C -0.076 4.076 30 H 0.046 0.954 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.098 0.902 34 H 0.064 0.936 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.115 0.885 38 H 0.115 0.885 39 H 0.236 0.764 40 H 0.086 0.914 41 H 0.096 0.904 42 H 0.099 0.901 43 H 0.075 0.925 44 H 0.112 0.888 45 H 0.066 0.934 46 H 0.203 0.797 47 H 0.084 0.916 48 H 0.124 0.876 49 H 0.065 0.935 50 H 0.091 0.909 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -17.404 6.069 -19.750 27.015 hybrid contribution 1.227 -1.150 -0.695 1.820 sum -16.177 4.918 -20.445 26.531 Atomic orbital electron populations 1.22530 0.87753 1.02137 1.00444 1.63596 1.07995 1.14230 1.40418 1.23047 0.95566 0.89688 1.00425 1.22801 0.97868 0.99227 0.96581 1.22125 0.95308 0.96053 0.97671 0.89819 1.21704 0.99461 0.98167 0.97890 1.20679 0.85879 0.80994 0.82418 1.90690 1.18072 1.67994 1.64829 1.45973 1.10619 1.40846 1.39754 1.22205 0.98541 0.88150 0.88424 0.88013 1.23141 1.02466 0.95210 0.98233 1.22858 0.97264 0.96448 0.92107 1.63334 1.11316 1.02134 1.46032 1.22181 0.90932 0.97368 0.98851 1.19644 0.82823 0.87709 0.86367 1.90548 1.78000 1.23948 1.51729 1.42214 1.12230 1.22598 1.45881 1.19423 0.91564 1.07689 1.24697 0.86254 1.25040 0.95738 0.98175 0.97189 1.69617 1.06010 1.39021 1.37361 0.86680 0.79075 0.83577 0.80102 1.19681 1.20130 1.19475 1.23254 0.94363 0.92420 0.97675 1.22860 0.98543 0.96640 0.89540 0.95409 0.91560 0.91368 0.90241 0.93564 0.90578 0.90325 0.88457 0.88529 0.76414 0.91409 0.90397 0.90121 0.92499 0.88835 0.93436 0.79724 0.91584 0.87555 0.93537 0.90929 0.91585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.12 60.07 0.55 0.70 16 2 N -0.54 -4.81 5.44 -239.51 -1.30 -6.11 16 3 C 0.04 0.29 6.73 -2.30 -0.02 0.28 16 4 C -0.13 -0.82 6.52 -24.59 -0.16 -0.99 16 5 C -0.09 -0.76 2.55 -88.80 -0.23 -0.98 16 6 H 0.08 0.81 8.04 -51.93 -0.42 0.39 16 7 C -0.13 -0.98 5.09 -27.88 -0.14 -1.12 16 8 C 0.51 5.53 7.62 -10.98 -0.08 5.45 16 9 O -0.54 -7.64 14.59 5.56 0.08 -7.56 16 10 N -0.72 -7.45 5.23 -51.74 -0.27 -7.72 16 11 C 0.13 1.66 3.31 -65.80 -0.22 1.44 16 12 H 0.10 1.46 7.73 -51.93 -0.40 1.06 16 13 C -0.15 -1.69 6.64 -24.91 -0.17 -1.86 16 14 C 0.04 0.50 6.89 -2.83 -0.02 0.48 16 15 N -0.50 -7.85 5.07 -232.68 -1.18 -9.03 16 16 C 0.04 0.62 5.07 -4.97 -0.03 0.60 16 17 C 0.45 9.86 7.34 -10.98 -0.08 9.78 16 18 O -0.56 -14.41 13.89 5.55 0.08 -14.33 16 19 N -0.59 -13.66 5.09 -10.96 -0.06 -13.71 16 20 C -0.31 -8.43 10.16 -14.93 -0.15 -8.58 16 21 H 0.12 3.78 7.39 -52.49 -0.39 3.39 16 22 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 23 N -0.88 -25.31 13.96 55.50 0.77 -24.54 16 24 Si 0.88 18.97 27.73 -169.99 -4.71 14.25 16 25 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 26 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 27 H -0.27 -5.30 6.52 56.52 0.37 -4.93 16 28 C 0.05 0.77 4.90 -2.30 -0.01 0.76 16 29 C 0.05 0.49 5.49 -2.83 -0.02 0.48 16 30 H 0.03 0.22 8.10 -51.93 -0.42 -0.20 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.05 0.32 7.78 -51.93 -0.40 -0.08 16 35 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.08 0.48 8.05 -51.93 -0.42 0.06 16 37 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.10 0.58 8.06 -51.93 -0.42 0.16 16 39 H 0.40 3.35 8.52 -40.82 -0.35 3.00 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.06 0.60 7.58 -51.93 -0.39 0.21 16 44 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 45 H 0.05 0.67 8.13 -51.93 -0.42 0.25 16 46 H 0.37 7.53 5.76 -40.82 -0.24 7.29 16 47 H 0.27 7.26 8.31 -40.82 -0.34 6.93 16 48 H 0.11 1.94 6.94 -51.93 -0.36 1.58 16 49 H 0.05 0.70 7.59 -51.93 -0.39 0.30 16 50 H 0.07 0.72 7.77 -51.93 -0.40 0.32 16 51 H 0.07 0.74 7.11 -51.93 -0.37 0.37 16 LS Contribution 400.80 15.07 6.04 6.04 Total: -1.00 -33.36 400.80 -10.18 -43.54 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: -8.77 Total: 11.72 kcal Atomic # 6 Polarization: 8.32 SS G_CDS: -0.86 Total: 7.45 kcal Atomic # 7 Polarization: -59.08 SS G_CDS: -2.03 Total: -61.11 kcal Atomic # 8 Polarization: -22.05 SS G_CDS: 0.16 Total: -21.89 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -4.71 Total: 14.25 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.36 -10.18 -43.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267732327.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.967 kcal (2) G-P(sol) polarization free energy of solvation -33.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds