Wall clock time and date at job start Sat Apr 11 2020 05:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47409 * 2 1 4 4 C 1.53005 * 109.46860 * 119.99587 * 2 1 3 5 5 N 1.46495 * 109.46921 * 65.00170 * 4 2 1 6 6 N 1.40126 * 126.16781 * 95.01581 * 5 4 2 7 7 H 0.97000 * 125.90671 * 0.02562 * 6 5 4 8 8 C 1.36603 * 108.18175 * 179.73883 * 6 5 4 9 9 C 1.50700 * 125.77430 * 180.22822 * 8 6 5 10 10 C 1.50701 * 109.47012 * 275.19199 * 9 8 6 11 11 O 1.21283 * 119.99739 * 359.97438 * 10 9 8 12 12 N 1.34771 * 120.00285 * 180.02562 * 10 9 8 13 13 C 1.46498 * 120.00529 * 179.97438 * 12 10 9 14 14 H 1.09002 * 109.46806 * 35.00095 * 13 12 10 15 15 C 1.53000 * 109.46973 * 275.00179 * 13 12 10 16 16 C 1.52995 * 109.47460 * 154.99871 * 13 12 10 17 17 N 1.46502 * 109.47196 * 305.00339 * 16 13 12 18 18 C 1.46498 * 119.99950 * 269.99712 * 17 16 13 19 19 C 1.36941 * 119.99969 * 89.99570 * 17 16 13 20 20 H 1.07998 * 119.99805 * 22.03239 * 19 17 16 21 21 C 1.38812 * 119.99718 * 202.02501 * 19 17 16 22 22 N 1.31612 * 120.00169 * 11.44084 * 21 19 17 23 23 Si 1.86799 * 119.99798 * 191.43314 * 21 19 17 24 24 H 1.48501 * 109.46931 * 60.00616 * 23 21 19 25 25 H 1.48498 * 109.47542 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.47510 * 300.00677 * 23 21 19 27 27 C 1.34825 * 108.44793 * 0.36988 * 8 6 5 28 28 C 1.34875 * 126.16737 * 274.97173 * 5 4 2 29 29 O 1.21776 * 126.18720 * 0.06123 * 28 5 4 30 30 H 1.09000 * 109.47366 * 300.00678 * 1 2 3 31 31 H 1.09003 * 109.46815 * 60.00187 * 1 2 3 32 32 H 1.08995 * 109.47518 * 180.02562 * 1 2 3 33 33 H 1.08991 * 109.47202 * 239.99561 * 2 1 3 34 34 H 1.08991 * 109.47421 * 179.97438 * 3 2 1 35 35 H 1.09002 * 109.46522 * 299.99975 * 3 2 1 36 36 H 1.09005 * 109.46763 * 59.99585 * 3 2 1 37 37 H 1.08998 * 109.47012 * 305.00040 * 4 2 1 38 38 H 1.09000 * 109.47156 * 185.00165 * 4 2 1 39 39 H 1.08996 * 109.46986 * 35.19208 * 9 8 6 40 40 H 1.08996 * 109.46968 * 155.19058 * 9 8 6 41 41 H 0.97005 * 119.99462 * 359.97438 * 12 10 9 42 42 H 1.08995 * 109.46917 * 299.99641 * 15 13 12 43 43 H 1.08996 * 109.47463 * 60.00281 * 15 13 12 44 44 H 1.09005 * 109.46697 * 179.97438 * 15 13 12 45 45 H 1.09001 * 109.47266 * 65.00136 * 16 13 12 46 46 H 1.08992 * 109.47455 * 185.00193 * 16 13 12 47 47 H 1.09003 * 109.46888 * 94.04019 * 18 17 16 48 48 H 1.08999 * 109.47087 * 214.03775 * 18 17 16 49 49 H 1.09001 * 109.47032 * 334.04619 * 18 17 16 50 50 H 0.97003 * 119.99797 * 179.97438 * 22 21 19 51 51 H 1.08002 * 125.95136 * 179.89652 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 7 1.6523 -2.1327 1.1907 6 7 2.4407 -3.1875 0.7118 7 1 3.3415 -3.1104 0.3603 8 6 1.7236 -4.3441 0.8314 9 6 2.1978 -5.7194 0.4380 10 6 1.9433 -5.9372 -1.0313 11 8 1.4273 -5.0620 -1.6936 12 7 2.2883 -7.1049 -1.6091 13 6 2.0404 -7.3170 -3.0373 14 1 2.1806 -6.3784 -3.5736 15 6 0.6060 -7.8099 -3.2383 16 6 3.0191 -8.3628 -3.5751 17 7 4.3916 -7.9467 -3.2758 18 6 5.1313 -7.1197 -4.2324 19 6 4.9829 -8.3307 -2.1019 20 1 4.6162 -9.1965 -1.5705 21 6 6.0537 -7.6073 -1.5951 22 7 6.3585 -6.4350 -2.1099 23 14 7.0620 -8.2975 -0.1822 24 1 7.6647 -9.5920 -0.5903 25 1 8.1396 -7.3391 0.1716 26 1 6.1830 -8.5103 0.9958 27 6 0.5187 -4.0464 1.3581 28 6 0.4727 -2.6514 1.5887 29 8 -0.4629 -2.0311 2.0607 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 3.1299 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 1.6053 -0.2616 2.1370 38 1 3.1262 -0.6443 1.2953 39 1 3.2656 -5.8067 0.6387 40 1 1.6570 -6.4691 1.0155 41 1 2.7007 -7.8050 -1.0792 42 1 0.4658 -8.7483 -2.7019 43 1 -0.0913 -7.0648 -2.8553 44 1 0.4215 -7.9672 -4.3010 45 1 2.8197 -9.3243 -3.1020 46 1 2.8948 -8.4560 -4.6538 47 1 5.0160 -6.0683 -3.9691 48 1 6.1875 -7.3877 -4.2037 49 1 4.7408 -7.2878 -5.2361 50 1 7.1066 -5.9293 -1.7554 51 1 -0.2717 -4.7509 1.5711 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268739440.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:32:01 Heat of formation + Delta-G solvation = 15.751751 kcal Electronic energy + Delta-G solvation = -30821.689972 eV Core-core repulsion = 26759.014990 eV Total energy + Delta-G solvation = -4062.674982 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.48133 -39.23341 -37.00970 -36.42771 -36.29879 -34.06600 -32.87542 -31.51464 -30.42166 -29.70218 -28.96489 -27.22721 -26.26593 -25.73807 -25.66881 -22.25870 -21.26147 -20.86170 -20.28030 -20.10127 -19.70843 -17.90165 -17.08128 -16.52641 -15.92626 -15.76472 -15.61934 -15.06851 -14.88903 -14.71012 -14.48713 -13.86168 -13.75437 -13.57406 -13.36940 -13.26586 -13.07158 -12.94319 -12.67217 -12.45158 -12.39590 -12.20419 -12.16863 -12.07066 -11.68436 -11.46088 -11.35525 -11.28055 -11.00385 -10.95563 -10.87892 -10.82728 -10.48927 -10.33358 -10.18825 -9.94459 -9.56488 -9.44153 -8.98197 -8.69955 -8.36473 -7.68322 -6.91055 -5.87134 -3.33438 1.69345 1.85415 3.14994 3.21385 3.30315 3.32406 3.46301 3.82162 3.95259 4.33289 4.56267 4.59131 4.64679 4.87579 5.14955 5.19862 5.22902 5.23883 5.26706 5.42062 5.44935 5.53144 5.60814 5.61246 5.62780 5.76153 5.81355 5.83528 5.92862 5.95038 5.99474 6.10152 6.12495 6.19672 6.21230 6.38267 6.38780 6.47619 6.52161 6.66498 6.81497 7.18535 7.28776 7.32992 7.57732 7.63559 7.68019 8.16821 8.23508 8.51524 8.81475 9.07425 9.71726 10.22064 11.16449 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.011545 B = 0.003289 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2424.695142 B = 8511.580069 C = 9215.235339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.117 4.117 3 C -0.144 4.144 4 C 0.139 3.861 5 N -0.415 5.415 6 N -0.486 5.486 7 H 0.441 0.559 8 C 0.226 3.774 9 C -0.094 4.094 10 C 0.520 3.480 11 O -0.550 6.550 12 N -0.684 5.684 13 C 0.121 3.879 14 H 0.076 0.924 15 C -0.160 4.160 16 C 0.141 3.859 17 N -0.599 5.599 18 C 0.164 3.836 19 C -0.255 4.255 20 H 0.067 0.933 21 C 0.006 3.994 22 N -0.902 5.902 23 Si 0.897 3.103 24 H -0.284 1.284 25 H -0.292 1.292 26 H -0.282 1.282 27 C -0.349 4.349 28 C 0.537 3.463 29 O -0.561 6.561 30 H 0.057 0.943 31 H 0.050 0.950 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.055 0.945 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.098 0.902 38 H 0.083 0.917 39 H 0.116 0.884 40 H 0.124 0.876 41 H 0.405 0.595 42 H 0.052 0.948 43 H 0.053 0.947 44 H 0.058 0.942 45 H 0.049 0.951 46 H 0.052 0.948 47 H 0.027 0.973 48 H 0.045 0.955 49 H -0.004 1.004 50 H 0.252 0.748 51 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.077 5.239 4.023 8.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.137 4.137 3 C -0.202 4.202 4 C 0.018 3.982 5 N -0.238 5.238 6 N -0.207 5.207 7 H 0.286 0.714 8 C 0.107 3.893 9 C -0.136 4.136 10 C 0.304 3.696 11 O -0.429 6.429 12 N -0.334 5.334 13 C 0.013 3.987 14 H 0.094 0.906 15 C -0.219 4.219 16 C 0.013 3.987 17 N -0.321 5.321 18 C 0.020 3.980 19 C -0.385 4.385 20 H 0.085 0.915 21 C -0.193 4.193 22 N -0.546 5.546 23 Si 0.727 3.273 24 H -0.211 1.211 25 H -0.218 1.218 26 H -0.209 1.209 27 C -0.380 4.380 28 C 0.336 3.664 29 O -0.442 6.442 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.117 0.883 38 H 0.102 0.898 39 H 0.134 0.866 40 H 0.142 0.858 41 H 0.241 0.759 42 H 0.071 0.929 43 H 0.072 0.928 44 H 0.077 0.923 45 H 0.068 0.932 46 H 0.070 0.930 47 H 0.045 0.955 48 H 0.064 0.936 49 H 0.014 0.986 50 H 0.062 0.938 51 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -6.667 6.603 3.831 10.135 hybrid contribution 1.549 -0.568 0.746 1.810 sum -5.118 6.035 4.576 9.141 Atomic orbital electron populations 1.21842 0.93799 1.03091 1.01336 1.21613 0.97671 0.96316 0.98073 1.21776 1.00837 0.95184 1.02361 1.21794 1.00609 0.76084 0.99711 1.48451 1.13160 1.01375 1.60776 1.43924 1.15013 0.99280 1.62489 0.71355 1.20154 0.91127 0.86454 0.91564 1.20552 1.05204 0.91663 0.96168 1.19905 0.78645 0.82738 0.88280 1.90704 1.44351 1.43054 1.64767 1.45659 1.60690 1.16448 1.10581 1.21804 0.93958 1.01410 0.81554 0.90620 1.22159 0.97575 1.00924 1.01272 1.21196 0.84888 0.94887 0.97736 1.43887 1.08274 1.60612 1.19305 1.20791 0.95497 0.94783 0.86966 1.19076 1.12943 1.06909 0.99565 0.91541 1.24977 1.00393 0.95434 0.98450 1.70078 1.29730 1.11535 1.43268 0.86479 0.80287 0.78317 0.82255 1.21068 1.21752 1.20861 1.21580 0.99586 0.96498 1.20347 1.16891 0.80553 0.88909 0.80041 1.90818 1.34505 1.68558 1.50318 0.92358 0.93123 0.91785 0.90679 0.92550 0.92049 0.92346 0.88347 0.89847 0.86551 0.85777 0.75922 0.92934 0.92836 0.92312 0.93249 0.92970 0.95513 0.93647 0.98587 0.93766 0.82603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 8.28 37.16 0.31 -1.57 16 2 C -0.12 -1.32 3.13 -90.62 -0.28 -1.60 16 3 C -0.14 -1.23 9.19 37.16 0.34 -0.89 16 4 C 0.14 1.56 5.82 -4.04 -0.02 1.54 16 5 N -0.42 -5.92 3.52 -63.24 -0.22 -6.15 16 6 N -0.49 -6.63 7.30 33.67 0.25 -6.39 16 7 H 0.44 5.27 8.96 -182.58 -1.64 3.63 16 8 C 0.23 3.25 5.70 -81.68 -0.47 2.78 16 9 C -0.09 -1.23 6.24 -29.03 -0.18 -1.41 16 10 C 0.52 8.82 7.79 -10.99 -0.09 8.73 16 11 O -0.55 -11.28 15.70 5.55 0.09 -11.19 16 12 N -0.68 -11.41 4.49 -53.81 -0.24 -11.66 16 13 C 0.12 2.05 2.88 -67.93 -0.20 1.86 16 14 H 0.08 1.53 7.58 -51.93 -0.39 1.13 16 15 C -0.16 -2.26 9.48 37.16 0.35 -1.90 16 16 C 0.14 2.50 5.36 -4.04 -0.02 2.47 16 17 N -0.60 -13.13 2.82 -181.12 -0.51 -13.64 16 18 C 0.16 3.76 9.01 59.85 0.54 4.30 16 19 C -0.26 -5.92 8.02 -15.06 -0.12 -6.05 16 20 H 0.07 1.48 7.84 -52.49 -0.41 1.07 16 21 C 0.01 0.15 5.13 -17.43 -0.09 0.06 16 22 N -0.90 -23.38 10.57 55.49 0.59 -22.79 16 23 Si 0.90 19.23 29.57 -169.99 -5.03 14.21 16 24 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 25 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 26 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 27 C -0.35 -5.48 10.73 -39.56 -0.42 -5.90 16 28 C 0.54 9.20 6.53 -14.99 -0.10 9.10 16 29 O -0.56 -11.01 16.34 5.12 0.08 -10.93 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 1.05 5.73 -51.93 -0.30 0.75 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 38 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.12 1.45 8.14 -51.93 -0.42 1.03 16 40 H 0.12 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.40 6.50 7.40 -40.82 -0.30 6.20 16 42 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 44 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.05 0.82 8.03 -51.93 -0.42 0.40 16 46 H 0.05 0.86 7.86 -51.93 -0.41 0.45 16 47 H 0.03 0.68 7.44 -51.93 -0.39 0.29 16 48 H 0.04 1.12 7.15 -51.93 -0.37 0.75 16 49 H 0.00 -0.09 7.85 -51.93 -0.41 -0.50 16 50 H 0.25 6.47 8.31 -40.82 -0.34 6.14 16 51 H 0.16 2.23 8.06 -52.49 -0.42 1.81 16 LS Contribution 412.97 15.07 6.22 6.22 Total: -1.00 -31.76 412.97 -9.31 -41.07 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: -10.09 Total: 9.73 kcal Atomic # 6 Polarization: 11.96 SS G_CDS: -0.45 Total: 11.52 kcal Atomic # 7 Polarization: -60.48 SS G_CDS: -0.14 Total: -60.62 kcal Atomic # 8 Polarization: -22.29 SS G_CDS: 0.17 Total: -22.12 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.03 Total: 14.21 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -31.76 -9.31 -41.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268739440.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.818 kcal (2) G-P(sol) polarization free energy of solvation -31.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds