Wall clock time and date at job start Sat Apr 11 2020 05:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46008 * 118.53345 * 2 1 4 4 C 1.52996 * 110.03463 * 161.81915 * 3 2 1 5 5 N 1.47187 * 108.72164 * 50.30522 * 4 3 2 6 6 C 1.46900 * 111.00225 * 167.61615 * 5 4 3 7 7 C 1.50699 * 109.47315 * 188.93474 * 6 5 4 8 8 O 1.21284 * 119.99932 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00309 * 180.02562 * 7 6 5 10 10 C 1.46937 * 120.60371 * 5.56605 * 9 7 6 11 11 C 1.53189 * 108.77294 * 233.57665 * 10 9 7 12 12 C 1.53046 * 109.33861 * 305.41522 * 11 10 9 13 13 C 1.53035 * 109.54052 * 61.34655 * 12 11 10 14 14 C 1.46930 * 120.63401 * 185.58500 * 9 7 6 15 15 H 1.08993 * 109.70253 * 246.24872 * 14 9 7 16 16 C 1.53002 * 109.58264 * 6.60489 * 14 9 7 17 17 N 1.46500 * 109.46909 * 178.11275 * 16 14 9 18 18 C 1.36935 * 119.99987 * 185.04284 * 17 16 14 19 19 H 1.08002 * 120.00012 * 359.97438 * 18 17 16 20 20 C 1.38811 * 120.00105 * 179.97438 * 18 17 16 21 21 N 1.31618 * 119.99984 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00097 * 179.97438 * 20 18 17 23 23 H 1.48492 * 109.46966 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.47030 * 120.00568 * 22 20 18 25 25 H 1.48502 * 109.47030 * 240.00230 * 22 20 18 26 26 C 1.46897 * 110.17342 * 290.98682 * 5 4 3 27 27 C 1.33715 * 118.53656 * 179.97438 * 2 1 3 28 28 O 1.21282 * 118.62277 * 1.71187 * 27 2 1 29 29 H 1.09001 * 109.46663 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47172 * 300.01903 * 1 2 3 31 31 H 1.09003 * 109.46816 * 60.02169 * 1 2 3 32 32 H 1.08998 * 109.37526 * 281.99077 * 3 2 1 33 33 H 1.09001 * 109.37936 * 41.64472 * 3 2 1 34 34 H 1.08998 * 109.61412 * 290.52212 * 4 3 2 35 35 H 1.09001 * 109.58675 * 170.06686 * 4 3 2 36 36 H 1.09007 * 109.46897 * 68.93798 * 6 5 4 37 37 H 1.09001 * 109.47133 * 308.94112 * 6 5 4 38 38 H 1.09000 * 109.56159 * 113.80447 * 10 9 7 39 39 H 1.09006 * 109.61344 * 353.37889 * 10 9 7 40 40 H 1.09000 * 109.50042 * 185.44097 * 11 10 9 41 41 H 1.09008 * 109.49934 * 65.37867 * 11 10 9 42 42 H 1.08997 * 109.45622 * 181.36719 * 12 11 10 43 43 H 1.08996 * 109.45386 * 301.34121 * 12 11 10 44 44 H 1.09008 * 109.49753 * 58.58530 * 13 12 11 45 45 H 1.09002 * 109.50295 * 178.68481 * 13 12 11 46 46 H 1.08996 * 109.47057 * 298.11069 * 16 14 9 47 47 H 1.09001 * 109.47302 * 58.11054 * 16 14 9 48 48 H 0.96996 * 120.00017 * 5.03859 * 17 16 14 49 49 H 0.97001 * 120.00109 * 179.97438 * 21 20 18 50 50 H 1.08996 * 109.38888 * 170.45082 * 26 5 4 51 51 H 1.09003 * 109.38627 * 290.24442 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1625 1.2827 0.0000 4 6 3.6126 1.0909 0.4485 5 7 4.2095 -0.0015 -0.3369 6 6 5.6677 -0.0387 -0.1637 7 6 6.2651 -1.0171 -1.1420 8 8 5.5467 -1.6233 -1.9084 9 7 7.5975 -1.2184 -1.1652 10 6 8.4673 -0.5850 -0.1646 11 6 9.5746 0.1852 -0.8908 12 6 10.3029 -0.7587 -1.8504 13 6 9.3173 -1.2872 -2.8950 14 6 8.2074 -2.0748 -2.1916 15 1 8.6303 -2.9640 -1.7243 16 6 7.1453 -2.4876 -3.2125 17 7 7.7652 -3.3041 -4.2591 18 6 7.0282 -3.7050 -5.3413 19 1 5.9898 -3.4196 -5.4231 20 6 7.6157 -4.4781 -6.3332 21 7 8.8813 -4.8255 -6.2338 22 14 6.6101 -5.0256 -7.8092 23 1 5.2245 -4.5066 -7.6841 24 1 7.2264 -4.4958 -9.0520 25 1 6.5803 -6.5093 -7.8651 26 6 3.6019 -1.2854 0.0377 27 6 2.1039 -1.1747 0.0005 28 8 1.4466 -2.1935 -0.0308 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5141 0.8898 31 1 -0.3633 0.5135 -0.8902 32 1 2.1476 1.7025 -1.0058 33 1 1.6602 1.9675 0.6833 34 1 3.6372 0.8353 1.5078 35 1 4.1722 2.0108 0.2792 36 1 5.9049 -0.3512 0.8533 37 1 6.0805 0.9538 -0.3444 38 1 8.9114 -1.3515 0.4705 39 1 7.8825 0.1038 0.4451 40 1 10.2821 0.5795 -0.1613 41 1 9.1357 1.0089 -1.4539 42 1 11.1070 -0.2187 -2.3503 43 1 10.7207 -1.5949 -1.2898 44 1 8.8803 -0.4499 -3.4393 45 1 9.8415 -1.9410 -3.5921 46 1 6.3673 -3.0656 -2.7138 47 1 6.7053 -1.5963 -3.6598 48 1 8.6977 -3.5607 -4.1854 49 1 9.2918 -5.3661 -6.9267 50 1 3.9251 -2.0564 -0.6616 51 1 3.9183 -1.5551 1.0453 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272974053.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:32:14 Heat of formation + Delta-G solvation = -46.366494 kcal Electronic energy + Delta-G solvation = -31034.533539 eV Core-core repulsion = 26969.164908 eV Total energy + Delta-G solvation = -4065.368631 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.85522 -41.21636 -38.83500 -37.87784 -36.65278 -36.19078 -34.03047 -33.68605 -31.58071 -31.02502 -30.42837 -28.09339 -27.24694 -25.89410 -25.35118 -24.83391 -23.69830 -22.45081 -21.73978 -20.07273 -19.70388 -19.14166 -18.31508 -17.78924 -17.69053 -17.20451 -16.97252 -16.46971 -16.31345 -15.82502 -15.69841 -15.45898 -15.34903 -15.17700 -14.88126 -14.77179 -14.52782 -14.39913 -14.19681 -14.03845 -13.52465 -13.46086 -13.37249 -13.15294 -13.06323 -12.86641 -12.85920 -12.69405 -12.49876 -12.28739 -12.17505 -12.03468 -11.98214 -11.79915 -11.53680 -11.36280 -11.03995 -11.00686 -10.14513 -9.77682 -9.55269 -9.37802 -8.94754 -7.98323 -5.25609 1.41419 1.43110 1.43921 1.54211 1.72366 1.89228 2.00973 2.53383 2.72243 3.34313 3.45263 3.57244 3.80836 3.87855 3.90755 4.00644 4.03752 4.15524 4.17746 4.24863 4.28877 4.30895 4.36561 4.41938 4.46688 4.54219 4.61826 4.65568 4.66252 4.73748 4.76122 4.87344 4.91026 5.00351 5.00848 5.09337 5.16272 5.22477 5.30673 5.35008 5.36285 5.44673 5.52003 5.62156 5.73121 5.89754 6.25426 6.31490 6.58110 7.01624 7.30951 7.36626 8.06515 8.33500 9.25426 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.009238 B = 0.003542 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3030.250535 B = 7902.943340 C =10463.702566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.606 5.606 3 C 0.112 3.888 4 C 0.036 3.964 5 N -0.537 5.537 6 C 0.049 3.951 7 C 0.492 3.508 8 O -0.558 6.558 9 N -0.606 5.606 10 C 0.101 3.899 11 C -0.127 4.127 12 C -0.116 4.116 13 C -0.117 4.117 14 C 0.152 3.848 15 H 0.063 0.937 16 C 0.176 3.824 17 N -0.745 5.745 18 C -0.241 4.241 19 H 0.058 0.942 20 C -0.071 4.071 21 N -0.966 5.966 22 Si 0.972 3.028 23 H -0.277 1.277 24 H -0.285 1.285 25 H -0.288 1.288 26 C 0.045 3.955 27 C 0.514 3.486 28 O -0.603 6.603 29 H 0.060 0.940 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.119 0.881 34 H 0.065 0.935 35 H 0.134 0.866 36 H 0.101 0.899 37 H 0.146 0.854 38 H 0.081 0.919 39 H 0.122 0.878 40 H 0.108 0.892 41 H 0.066 0.934 42 H 0.072 0.928 43 H 0.068 0.932 44 H 0.048 0.952 45 H 0.050 0.950 46 H 0.023 0.977 47 H 0.005 0.995 48 H 0.373 0.627 49 H 0.253 0.747 50 H 0.091 0.909 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.156 22.587 24.128 33.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.338 5.338 3 C -0.010 4.010 4 C -0.091 4.091 5 N -0.264 5.264 6 C -0.081 4.081 7 C 0.281 3.719 8 O -0.436 6.436 9 N -0.341 5.341 10 C -0.019 4.019 11 C -0.165 4.165 12 C -0.154 4.154 13 C -0.156 4.156 14 C 0.048 3.952 15 H 0.081 0.919 16 C 0.050 3.950 17 N -0.390 5.390 18 C -0.373 4.373 19 H 0.076 0.924 20 C -0.263 4.263 21 N -0.617 5.617 22 Si 0.800 3.200 23 H -0.202 1.202 24 H -0.211 1.211 25 H -0.214 1.214 26 C -0.086 4.086 27 C 0.303 3.697 28 O -0.485 6.485 29 H 0.079 0.921 30 H 0.110 0.890 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.137 0.863 34 H 0.083 0.917 35 H 0.152 0.848 36 H 0.118 0.882 37 H 0.163 0.837 38 H 0.099 0.901 39 H 0.140 0.860 40 H 0.126 0.874 41 H 0.084 0.916 42 H 0.091 0.909 43 H 0.087 0.913 44 H 0.066 0.934 45 H 0.069 0.931 46 H 0.041 0.959 47 H 0.023 0.977 48 H 0.206 0.794 49 H 0.062 0.938 50 H 0.109 0.891 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.151 21.887 23.144 32.268 hybrid contribution -0.012 -1.367 -0.812 1.590 sum -5.163 20.520 22.331 30.764 Atomic orbital electron populations 1.21861 0.78690 1.03422 1.03347 1.47505 1.08204 1.06583 1.71551 1.21861 0.92121 0.83397 1.03601 1.22744 0.94524 0.95770 0.96020 1.62031 1.04031 1.03132 1.57210 1.22185 0.87262 1.00921 0.97741 1.21468 0.81886 0.83399 0.85156 1.90825 1.61076 1.49209 1.42467 1.48288 1.06392 1.48688 1.30736 1.22154 0.92458 0.97677 0.89656 1.21918 0.97880 0.97639 0.99072 1.21538 0.97270 0.99887 0.96677 1.21784 0.96358 0.99125 0.98310 1.21137 0.93360 0.92536 0.88214 0.91875 1.21103 0.92956 0.92849 0.88091 1.42722 1.11606 1.61928 1.22736 1.19506 0.94032 1.25256 0.98549 0.92405 1.25487 0.97441 1.01614 1.01801 1.69801 1.12240 1.43480 1.36177 0.85103 0.77903 0.77537 0.79425 1.20177 1.21123 1.21446 1.22216 0.89442 0.94804 1.02127 1.20467 0.90924 0.83342 0.74927 1.90684 1.67840 1.36721 1.53239 0.92127 0.89017 0.90853 0.90941 0.86270 0.91690 0.84780 0.88158 0.83660 0.90119 0.85987 0.87354 0.91568 0.90927 0.91333 0.93352 0.93099 0.95894 0.97742 0.79426 0.93810 0.89134 0.89701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.17 10.55 127.77 1.35 2.52 16 2 N -0.61 -12.32 3.23 -850.17 -2.74 -15.06 16 3 C 0.11 1.20 6.64 86.47 0.57 1.77 16 4 C 0.04 0.31 5.60 86.25 0.48 0.80 16 5 N -0.54 -10.25 4.47 -905.46 -4.05 -14.30 16 6 C 0.05 0.72 3.79 85.56 0.32 1.04 16 7 C 0.49 13.75 7.29 87.66 0.64 14.39 16 8 O -0.56 -22.89 9.86 -3.04 -0.03 -22.92 16 9 N -0.61 -15.39 2.97 -794.99 -2.36 -17.76 16 10 C 0.10 1.31 6.35 86.36 0.55 1.86 16 11 C -0.13 -1.63 6.08 30.67 0.19 -1.45 16 12 C -0.12 -2.39 5.88 30.62 0.18 -2.21 16 13 C -0.12 -3.78 5.10 30.67 0.16 -3.63 16 14 C 0.15 5.37 3.07 44.98 0.14 5.51 16 15 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 16 C 0.18 8.58 4.14 86.38 0.36 8.94 16 17 N -0.74 -42.74 5.27 -343.45 -1.81 -44.55 16 18 C -0.24 -15.26 9.99 84.03 0.84 -14.42 16 19 H 0.06 3.72 7.83 -2.91 -0.02 3.70 16 20 C -0.07 -4.43 5.50 84.86 0.47 -3.97 16 21 N -0.97 -62.10 13.06 21.65 0.28 -61.81 16 22 Si 0.97 50.27 29.55 68.60 2.03 52.29 16 23 H -0.28 -14.02 7.11 99.48 0.71 -13.31 16 24 H -0.28 -14.27 7.11 99.48 0.71 -13.56 16 25 H -0.29 -14.60 7.11 99.48 0.71 -13.89 16 26 C 0.04 1.16 5.14 85.42 0.44 1.60 16 27 C 0.51 15.04 7.57 87.68 0.66 15.71 16 28 O -0.60 -23.35 16.07 -3.04 -0.05 -23.40 16 29 H 0.06 1.42 6.67 -2.39 -0.02 1.40 16 30 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.12 0.40 8.12 -2.39 -0.02 0.38 16 34 H 0.06 0.39 8.08 -2.39 -0.02 0.37 16 35 H 0.13 0.27 7.91 -2.39 -0.02 0.25 16 36 H 0.10 0.81 7.63 -2.38 -0.02 0.80 16 37 H 0.15 1.09 7.71 -2.39 -0.02 1.07 16 38 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.12 0.58 5.93 -2.38 -0.01 0.57 16 40 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 42 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 45 H 0.05 1.98 7.08 -2.39 -0.02 1.96 16 46 H 0.02 1.27 6.24 -2.39 -0.01 1.25 16 47 H 0.00 0.24 7.24 -2.39 -0.02 0.23 16 48 H 0.37 21.75 6.66 -92.71 -0.62 21.13 16 49 H 0.25 15.55 8.31 -92.71 -0.77 14.78 16 50 H 0.09 3.28 6.01 -2.39 -0.01 3.27 16 51 H 0.09 1.77 8.05 -2.39 -0.02 1.75 16 Total: -1.00 -93.92 389.38 -1.08 -95.00 By element: Atomic # 1 Polarization: 23.74 SS G_CDS: 0.31 Total: 24.05 kcal Atomic # 6 Polarization: 21.11 SS G_CDS: 7.34 Total: 28.46 kcal Atomic # 7 Polarization: -142.80 SS G_CDS: -10.68 Total: -153.48 kcal Atomic # 8 Polarization: -46.24 SS G_CDS: -0.08 Total: -46.32 kcal Atomic # 14 Polarization: 50.27 SS G_CDS: 2.03 Total: 52.29 kcal Total: -93.92 -1.08 -95.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272974053.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.629 kcal (2) G-P(sol) polarization free energy of solvation -93.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds