Wall clock time and date at job start Sat Apr 11 2020 05:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46892 * 111.00306 * 2 1 4 4 C 1.50701 * 109.46993 * 66.04420 * 3 2 1 5 5 H 1.07994 * 120.00328 * 0.02562 * 4 3 2 6 6 C 1.37887 * 119.99865 * 179.97438 * 4 3 2 7 7 N 1.31513 * 120.00027 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 119.99584 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47098 * 60.00416 * 8 6 4 10 10 H 1.48504 * 109.46649 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47435 * 300.00203 * 8 6 4 12 12 C 1.46906 * 110.99925 * 236.04735 * 2 1 3 13 13 C 1.52998 * 109.47197 * 199.76710 * 12 2 1 14 14 H 1.09003 * 109.47068 * 302.16128 * 13 12 2 15 15 O 1.42905 * 109.47031 * 62.15935 * 13 12 2 16 16 C 1.52999 * 109.47318 * 182.15693 * 13 12 2 17 17 N 1.46901 * 109.47409 * 179.97438 * 16 13 12 18 18 C 1.46893 * 111.00024 * 180.02562 * 17 16 13 19 19 C 1.53005 * 109.47093 * 179.97438 * 18 17 16 20 20 C 1.53000 * 109.46854 * 300.00154 * 19 18 17 21 21 C 1.52999 * 109.47054 * 59.99907 * 19 18 17 22 22 C 1.50697 * 109.47039 * 179.97438 * 19 18 17 23 23 C 1.38269 * 119.98742 * 359.73254 * 22 19 18 24 24 C 1.38231 * 120.05006 * 179.72687 * 23 22 19 25 25 C 1.38219 * 120.02346 * 0.54128 * 24 23 22 26 26 C 1.38447 * 119.97644 * 359.72593 * 25 24 23 27 27 F 1.35101 * 120.02494 * 180.02562 * 26 25 24 28 28 C 1.38174 * 119.98576 * 179.97438 * 22 19 18 29 29 H 1.08999 * 109.47031 * 54.96694 * 1 2 3 30 30 H 1.09002 * 109.47006 * 174.96219 * 1 2 3 31 31 H 1.08993 * 109.46940 * 294.96483 * 1 2 3 32 32 H 1.08994 * 109.47530 * 186.04788 * 3 2 1 33 33 H 1.09008 * 109.47253 * 306.04661 * 3 2 1 34 34 H 0.97000 * 119.99606 * 179.97438 * 7 6 4 35 35 H 1.09000 * 109.46958 * 319.76806 * 12 2 1 36 36 H 1.09002 * 109.47247 * 79.76447 * 12 2 1 37 37 H 0.96701 * 114.00201 * 59.99801 * 15 13 12 38 38 H 1.08995 * 109.47044 * 300.00138 * 16 13 12 39 39 H 1.09002 * 109.46836 * 59.99632 * 16 13 12 40 40 H 1.00901 * 110.99676 * 56.04861 * 17 16 13 41 41 H 1.09006 * 109.47427 * 300.00241 * 18 17 16 42 42 H 1.08997 * 109.47301 * 59.99976 * 18 17 16 43 43 H 1.08997 * 109.47385 * 60.00219 * 20 19 18 44 44 H 1.09005 * 109.46246 * 179.97438 * 20 19 18 45 45 H 1.08997 * 109.47025 * 299.99704 * 20 19 18 46 46 H 1.09006 * 109.46727 * 60.00206 * 21 19 18 47 47 H 1.08995 * 109.47368 * 179.97438 * 21 19 18 48 48 H 1.09001 * 109.47120 * 300.00336 * 21 19 18 49 49 H 1.07991 * 119.97873 * 359.97014 * 23 22 19 50 50 H 1.07997 * 119.98918 * 180.26947 * 24 23 22 51 51 H 1.08002 * 120.01381 * 179.75260 * 25 24 23 52 52 H 1.08000 * 120.01467 * 359.97438 * 28 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6370 2.0470 1.2984 5 1 1.0746 1.5112 2.0488 6 6 2.0278 3.3491 1.5289 7 7 2.7130 4.0015 0.6154 8 14 1.5840 4.1863 3.1387 9 1 2.1757 3.4285 4.2704 10 1 2.1161 5.5728 3.1386 11 1 0.1067 4.2236 3.2865 12 6 1.9955 -0.7660 -1.1377 13 6 3.4455 -1.1649 -0.8566 14 1 4.0400 -0.2695 -0.6748 15 8 3.4925 -2.0098 0.2950 16 6 4.0109 -1.9161 -2.0636 17 7 5.4034 -2.2986 -1.7941 18 6 5.9805 -3.0231 -2.9342 19 6 7.4282 -3.4033 -2.6169 20 6 8.2425 -2.1350 -2.3535 21 6 7.4605 -4.2970 -1.3756 22 6 8.0200 -4.1471 -3.7864 23 6 7.2540 -4.3863 -4.9124 24 6 7.7973 -5.0635 -5.9880 25 6 9.1036 -5.5120 -5.9346 26 6 9.8698 -5.2779 -4.8055 27 9 11.1469 -5.7154 -4.7525 28 6 9.3263 -4.5940 -3.7309 29 1 -0.3633 0.5899 -0.8415 30 1 -0.3633 -1.0237 -0.0902 31 1 -0.3633 0.4337 0.9316 32 1 3.0797 1.3443 -0.1083 33 1 1.5612 1.9273 -0.8310 34 1 2.9876 4.9176 0.7775 35 1 1.3932 -1.6630 -1.2815 36 1 1.9552 -0.1531 -2.0382 37 1 2.9842 -2.8273 0.2040 38 1 3.4165 -2.8115 -2.2453 39 1 3.9750 -1.2717 -2.9420 40 1 5.4714 -2.8432 -0.9473 41 1 5.4001 -3.9264 -3.1222 42 1 5.9579 -2.3862 -3.8184 43 1 7.8143 -1.5974 -1.5075 44 1 9.2738 -2.4060 -2.1271 45 1 8.2195 -1.4983 -3.2379 46 1 6.8803 -5.2006 -1.5633 47 1 8.4917 -4.5683 -1.1498 48 1 7.0322 -3.7594 -0.5296 49 1 6.2318 -4.0405 -4.9531 50 1 7.1995 -5.2461 -6.8687 51 1 9.5267 -6.0446 -6.7736 52 1 9.9233 -4.4101 -2.8499 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566114724.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:30:04 Heat of formation + Delta-G solvation = -95.598169 kcal Electronic energy + Delta-G solvation = -29182.273856 eV Core-core repulsion = 25094.850418 eV Total energy + Delta-G solvation = -4087.423438 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.90569 -40.90113 -39.52239 -38.00134 -36.98581 -34.74734 -34.59024 -31.77547 -31.14403 -30.54032 -29.30579 -28.14330 -27.65660 -26.12951 -25.01024 -23.76687 -23.18477 -22.69279 -21.70460 -20.24081 -18.61934 -18.38109 -17.50090 -17.29650 -17.11631 -16.98829 -16.61430 -16.57370 -16.17057 -15.97135 -15.77317 -15.52153 -15.08401 -14.99050 -14.69627 -14.46065 -14.34449 -14.10353 -13.96294 -13.69485 -13.45886 -13.25503 -13.06968 -12.91890 -12.80970 -12.78507 -12.63800 -12.55305 -12.52910 -12.47375 -12.31031 -12.10824 -11.87916 -11.66971 -11.48225 -11.46849 -11.32114 -10.70622 -10.58779 -9.88942 -9.63421 -9.24768 -8.92984 -8.18877 -6.28335 0.19402 0.26709 1.40484 1.44451 1.52074 2.41301 2.62959 2.91973 3.13366 3.25779 3.49052 3.65079 3.74057 3.74607 3.98093 4.04526 4.09504 4.13469 4.21948 4.24285 4.28322 4.38889 4.45744 4.46410 4.60522 4.64332 4.70712 4.73335 4.80012 4.83312 4.85716 4.88351 4.99919 5.04982 5.09273 5.09464 5.13892 5.15202 5.18420 5.29342 5.33098 5.34044 5.39037 5.46600 5.61023 5.66200 5.95212 6.07255 6.12237 6.36626 6.52596 6.67643 6.87461 7.08997 7.40824 8.91946 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.020238 B = 0.001879 C = 0.001806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.169847 B =14898.312962 C =15496.310899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.542 5.542 3 C 0.211 3.789 4 C -0.523 4.523 5 H 0.061 0.939 6 C -0.001 4.001 7 N -0.934 5.934 8 Si 0.969 3.031 9 H -0.270 1.270 10 H -0.283 1.283 11 H -0.266 1.266 12 C 0.026 3.974 13 C 0.126 3.874 14 H 0.062 0.938 15 O -0.558 6.558 16 C 0.045 3.955 17 N -0.694 5.694 18 C 0.072 3.928 19 C -0.018 4.018 20 C -0.129 4.129 21 C -0.141 4.141 22 C -0.042 4.042 23 C -0.136 4.136 24 C -0.085 4.085 25 C -0.164 4.164 26 C 0.078 3.922 27 F -0.152 7.152 28 C -0.157 4.157 29 H 0.006 0.994 30 H 0.084 0.916 31 H 0.053 0.947 32 H 0.003 0.997 33 H -0.042 1.042 34 H 0.264 0.736 35 H 0.097 0.903 36 H 0.027 0.973 37 H 0.378 0.622 38 H 0.056 0.944 39 H 0.076 0.924 40 H 0.349 0.651 41 H 0.046 0.954 42 H 0.073 0.927 43 H 0.061 0.939 44 H 0.055 0.945 45 H 0.047 0.953 46 H 0.061 0.939 47 H 0.062 0.938 48 H 0.064 0.936 49 H 0.145 0.855 50 H 0.159 0.841 51 H 0.149 0.851 52 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.007 -22.796 -13.751 28.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.266 5.266 3 C 0.084 3.916 4 C -0.562 4.562 5 H 0.079 0.921 6 C -0.199 4.199 7 N -0.575 5.575 8 Si 0.793 3.207 9 H -0.195 1.195 10 H -0.208 1.208 11 H -0.191 1.191 12 C -0.103 4.103 13 C 0.066 3.934 14 H 0.080 0.920 15 O -0.364 6.364 16 C -0.086 4.086 17 N -0.328 5.328 18 C -0.057 4.057 19 C -0.018 4.018 20 C -0.186 4.186 21 C -0.199 4.199 22 C -0.043 4.043 23 C -0.154 4.154 24 C -0.103 4.103 25 C -0.183 4.183 26 C 0.059 3.941 27 F -0.131 7.131 28 C -0.176 4.176 29 H 0.025 0.975 30 H 0.102 0.898 31 H 0.072 0.928 32 H 0.021 0.979 33 H -0.024 1.024 34 H 0.072 0.928 35 H 0.115 0.885 36 H 0.045 0.955 37 H 0.226 0.774 38 H 0.074 0.926 39 H 0.094 0.906 40 H 0.170 0.830 41 H 0.064 0.936 42 H 0.092 0.908 43 H 0.080 0.920 44 H 0.074 0.926 45 H 0.067 0.933 46 H 0.080 0.920 47 H 0.081 0.919 48 H 0.083 0.917 49 H 0.163 0.837 50 H 0.177 0.823 51 H 0.166 0.834 52 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 9.915 -21.790 -13.313 27.393 hybrid contribution -0.655 0.123 -0.223 0.702 sum 9.261 -21.667 -13.536 27.175 Atomic orbital electron populations 1.22215 0.87516 1.00885 0.99971 1.61935 1.07827 1.15088 1.41757 1.19370 0.93697 0.83890 0.94593 1.21455 1.34751 0.97442 1.02512 0.92127 1.25935 0.95104 0.98157 1.00722 1.70080 1.39355 1.11848 1.36192 0.85448 0.78849 0.77141 0.79245 1.19506 1.20799 1.19104 1.22817 0.97170 0.98567 0.91786 1.21686 0.93819 0.92668 0.85247 0.92040 1.86655 1.74474 1.35421 1.39817 1.22434 0.89055 0.99401 0.97662 1.60273 1.17839 1.48532 1.06163 1.22072 0.93304 0.96509 0.93778 1.19445 0.94592 0.94848 0.92911 1.21752 0.98866 0.96049 1.01983 1.21912 1.02641 0.98970 0.96337 1.19713 0.92732 0.96259 0.95569 1.21515 1.01282 0.99658 0.92984 1.21343 0.94066 0.95613 0.99278 1.21408 0.95583 1.03556 0.97756 1.17955 0.79435 0.99936 0.96822 1.91470 1.36812 1.87891 1.96919 1.21034 0.96670 1.01051 0.98815 0.97493 0.89784 0.92849 0.97874 1.02431 0.92758 0.88459 0.95499 0.77400 0.92610 0.90567 0.82998 0.93581 0.90824 0.91964 0.92608 0.93341 0.92042 0.91943 0.91726 0.83708 0.82349 0.83371 0.84684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.59 9.31 127.69 1.19 2.78 16 2 N -0.54 -23.21 4.59 -927.06 -4.25 -27.47 16 3 C 0.21 11.48 4.55 85.56 0.39 11.87 16 4 C -0.52 -30.54 8.58 25.60 0.22 -30.32 16 5 H 0.06 3.47 7.10 -2.91 -0.02 3.45 16 6 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 7 N -0.93 -57.53 13.29 21.45 0.28 -57.24 16 8 Si 0.97 45.41 29.54 68.60 2.03 47.43 16 9 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 10 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 11 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 12 C 0.03 0.84 4.65 86.30 0.40 1.24 16 13 C 0.13 3.92 3.31 30.59 0.10 4.02 16 14 H 0.06 2.54 6.73 -2.39 -0.02 2.53 16 15 O -0.56 -17.03 12.58 -148.98 -1.87 -18.91 16 16 C 0.04 0.98 5.39 86.30 0.47 1.45 16 17 N -0.69 -14.81 5.71 -513.89 -2.94 -17.74 16 18 C 0.07 1.19 3.31 86.31 0.29 1.47 16 19 C -0.02 -0.29 0.67 -52.93 -0.04 -0.32 16 20 C -0.13 -2.50 8.13 71.98 0.59 -1.91 16 21 C -0.14 -2.15 7.96 71.98 0.57 -1.58 16 22 C -0.04 -0.66 4.76 -19.87 -0.09 -0.76 16 23 C -0.14 -1.81 8.97 22.28 0.20 -1.61 16 24 C -0.09 -0.98 10.04 22.26 0.22 -0.75 16 25 C -0.16 -2.27 10.03 22.32 0.22 -2.04 16 26 C 0.08 1.37 7.30 22.38 0.16 1.54 16 27 F -0.15 -3.06 17.27 44.97 0.78 -2.28 16 28 C -0.16 -2.68 8.69 22.31 0.19 -2.49 16 29 H 0.01 0.25 8.08 -2.39 -0.02 0.23 16 30 H 0.08 2.43 7.85 -2.39 -0.02 2.41 16 31 H 0.05 2.18 7.01 -2.39 -0.02 2.16 16 32 H 0.00 0.19 6.60 -2.39 -0.02 0.18 16 33 H -0.04 -2.47 8.07 -2.38 -0.02 -2.49 16 34 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 35 H 0.10 2.42 7.75 -2.39 -0.02 2.40 16 36 H 0.03 0.92 8.00 -2.39 -0.02 0.90 16 37 H 0.38 7.88 9.05 -74.06 -0.67 7.21 16 38 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.35 7.39 6.16 -89.69 -0.55 6.84 16 41 H 0.05 0.63 7.50 -2.38 -0.02 0.62 16 42 H 0.07 1.25 7.53 -2.39 -0.02 1.23 16 43 H 0.06 1.42 7.60 -2.39 -0.02 1.40 16 44 H 0.05 0.98 7.39 -2.38 -0.02 0.96 16 45 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 46 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 47 H 0.06 0.91 7.39 -2.39 -0.02 0.89 16 48 H 0.06 1.08 6.57 -2.39 -0.02 1.06 16 49 H 0.15 1.51 5.89 -2.92 -0.02 1.49 16 50 H 0.16 0.92 8.06 -2.91 -0.02 0.89 16 51 H 0.15 1.48 8.06 -2.91 -0.02 1.46 16 52 H 0.14 2.17 7.10 -2.91 -0.02 2.15 16 Total: -1.00 -70.61 411.77 -0.73 -71.35 By element: Atomic # 1 Polarization: 22.21 SS G_CDS: -0.30 Total: 21.91 kcal Atomic # 6 Polarization: -22.60 SS G_CDS: 5.55 Total: -17.05 kcal Atomic # 7 Polarization: -95.55 SS G_CDS: -6.90 Total: -102.45 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: -1.87 Total: -18.91 kcal Atomic # 9 Polarization: -3.06 SS G_CDS: 0.78 Total: -2.28 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.43 kcal Total: -70.61 -0.73 -71.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566114724.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.251 kcal (2) G-P(sol) polarization free energy of solvation -70.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds