Wall clock time and date at job start Sat Apr 11 2020 05:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46907 * 110.99993 * 2 1 4 4 C 1.50693 * 109.46852 * 293.95396 * 3 2 1 5 5 H 1.08001 * 120.00273 * 0.02562 * 4 3 2 6 6 C 1.37881 * 119.99795 * 180.02562 * 4 3 2 7 7 N 1.31517 * 120.00051 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 119.99965 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47036 * 89.99696 * 8 6 4 10 10 H 1.48494 * 109.47011 * 210.00080 * 8 6 4 11 11 H 1.48507 * 109.47222 * 330.00146 * 8 6 4 12 12 C 1.46902 * 111.00010 * 123.95092 * 2 1 3 13 13 C 1.53009 * 109.46892 * 164.00738 * 12 2 1 14 14 H 1.09001 * 109.46358 * 58.51402 * 13 12 2 15 15 O 1.42893 * 109.47413 * 298.51321 * 13 12 2 16 16 C 1.52996 * 109.46876 * 178.51050 * 13 12 2 17 17 N 1.46899 * 109.46927 * 185.00240 * 16 13 12 18 18 C 1.46899 * 111.00080 * 180.02562 * 17 16 13 19 19 C 1.52999 * 109.47363 * 180.02562 * 18 17 16 20 20 C 1.52998 * 109.47207 * 59.99880 * 19 18 17 21 21 C 1.52995 * 109.47013 * 300.00121 * 19 18 17 22 22 C 1.50698 * 109.47101 * 180.02562 * 19 18 17 23 23 C 1.38271 * 119.99070 * 359.95228 * 22 19 18 24 24 C 1.38220 * 120.05114 * 179.97438 * 23 22 19 25 25 C 1.38223 * 120.02868 * 0.04873 * 24 23 22 26 26 C 1.38436 * 119.97205 * 359.97438 * 25 24 23 27 27 F 1.35102 * 120.02605 * 180.02562 * 26 25 24 28 28 C 1.38183 * 119.98802 * 180.02562 * 22 19 18 29 29 H 1.09003 * 109.47054 * 301.53089 * 1 2 3 30 30 H 1.08998 * 109.47422 * 61.52836 * 1 2 3 31 31 H 1.08998 * 109.47259 * 181.53396 * 1 2 3 32 32 H 1.08994 * 109.46875 * 53.95679 * 3 2 1 33 33 H 1.09004 * 109.46810 * 173.95454 * 3 2 1 34 34 H 0.96999 * 119.99520 * 180.02562 * 7 6 4 35 35 H 1.09002 * 109.47011 * 44.01805 * 12 2 1 36 36 H 1.08992 * 109.47290 * 284.01228 * 12 2 1 37 37 H 0.96701 * 113.99947 * 300.00419 * 15 13 12 38 38 H 1.09000 * 109.46979 * 65.00704 * 16 13 12 39 39 H 1.09000 * 109.47285 * 305.00058 * 16 13 12 40 40 H 1.00895 * 111.00012 * 303.95646 * 17 16 13 41 41 H 1.09002 * 109.47279 * 59.99785 * 18 17 16 42 42 H 1.09003 * 109.47448 * 300.00287 * 18 17 16 43 43 H 1.08994 * 109.47091 * 179.97438 * 20 19 18 44 44 H 1.08995 * 109.47325 * 300.00808 * 20 19 18 45 45 H 1.09007 * 109.47109 * 59.99824 * 20 19 18 46 46 H 1.09009 * 109.47121 * 299.99664 * 21 19 18 47 47 H 1.08994 * 109.47284 * 60.00081 * 21 19 18 48 48 H 1.09005 * 109.47480 * 180.02562 * 21 19 18 49 49 H 1.08000 * 119.97031 * 0.05000 * 23 22 19 50 50 H 1.07997 * 119.98493 * 180.02562 * 24 23 22 51 51 H 1.08002 * 120.01093 * 179.97438 * 25 24 23 52 52 H 1.08001 * 120.00802 * 0.25452 * 28 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 -1.2984 5 1 1.0739 1.5115 -2.0484 6 6 2.0277 3.3491 -1.5289 7 7 2.7137 4.0013 -0.6158 8 14 1.5826 4.1869 -3.1381 9 1 0.2707 4.8679 -2.9953 10 1 2.6252 5.1875 -3.4801 11 1 1.4981 3.1712 -4.2182 12 6 1.9954 -0.7659 1.1376 13 6 3.4728 -1.0840 0.8984 14 1 4.0282 -0.1549 0.7697 15 8 3.6034 -1.8838 -0.2785 16 6 4.0308 -1.8495 2.0998 17 7 5.4754 -2.0502 1.9246 18 6 6.0467 -2.7842 3.0616 19 6 7.5493 -2.9729 2.8438 20 6 8.2239 -1.6044 2.7295 21 6 7.7823 -3.7655 1.5562 22 6 8.1351 -3.7264 4.0100 23 6 7.3211 -4.1262 5.0538 24 6 7.8571 -4.8179 6.1237 25 6 9.2078 -5.1099 6.1520 26 6 10.0239 -4.7097 5.1077 27 9 11.3442 -4.9949 5.1340 28 6 9.4860 -4.0163 4.0366 29 1 -0.3633 0.5374 0.8760 30 1 -0.3634 0.4899 -0.9033 31 1 -0.3634 -1.0273 0.0275 32 1 1.5611 1.9273 0.8309 33 1 3.0798 1.3444 0.1082 34 1 2.9882 4.9174 -0.7778 35 1 1.4357 -1.6957 1.2399 36 1 1.8934 -0.1781 2.0498 37 1 3.1333 -2.7277 -0.2346 38 1 3.5360 -2.8178 2.1753 39 1 3.8512 -1.2777 3.0102 40 1 5.6720 -2.5218 1.0546 41 1 5.5658 -3.7589 3.1434 42 1 5.8810 -2.2193 3.9790 43 1 9.2943 -1.7388 2.5748 44 1 7.8000 -1.0597 1.8859 45 1 8.0578 -1.0396 3.6469 46 1 7.3018 -4.7405 1.6376 47 1 7.3585 -3.2209 0.7125 48 1 8.8528 -3.9004 1.4011 49 1 6.2655 -3.8989 5.0323 50 1 7.2202 -5.1300 6.9382 51 1 9.6264 -5.6500 6.9883 52 1 10.1225 -3.6993 3.2237 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566114725.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:30:07 Heat of formation + Delta-G solvation = -95.569396 kcal Electronic energy + Delta-G solvation = -29209.004018 eV Core-core repulsion = 25121.581827 eV Total energy + Delta-G solvation = -4087.422191 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.90636 -40.90266 -39.53157 -38.00344 -36.97819 -34.76597 -34.58882 -31.77569 -31.13719 -30.53648 -29.31012 -28.14847 -27.65951 -26.12133 -25.01213 -23.76917 -23.18669 -22.73315 -21.67280 -20.23975 -18.62666 -18.37962 -17.48601 -17.29607 -17.12291 -16.99875 -16.61460 -16.56355 -16.19158 -15.98833 -15.75355 -15.51600 -15.08651 -15.00377 -14.69466 -14.46330 -14.32440 -14.09829 -13.97190 -13.70682 -13.47564 -13.25660 -13.07398 -12.90149 -12.81044 -12.78098 -12.64347 -12.57861 -12.53410 -12.50184 -12.28646 -12.12257 -11.88267 -11.66805 -11.46963 -11.45330 -11.29209 -10.70198 -10.58932 -9.89026 -9.63536 -9.25889 -8.93281 -8.18779 -6.28050 0.19393 0.26618 1.40290 1.42528 1.54101 2.41355 2.62915 2.92521 3.13559 3.25850 3.48175 3.64834 3.73592 3.75120 3.97409 4.04637 4.09201 4.13122 4.22257 4.24163 4.28174 4.38085 4.46011 4.46907 4.60997 4.64158 4.70249 4.73056 4.79830 4.82976 4.85437 4.88194 4.99514 5.04499 5.09241 5.09557 5.13709 5.15474 5.18325 5.29836 5.33524 5.33852 5.38975 5.46262 5.60846 5.66435 5.95156 6.07735 6.12300 6.36885 6.50978 6.67583 6.87964 7.08980 7.41081 8.92278 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.019740 B = 0.001907 C = 0.001821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.133258 B =14680.960556 C =15372.675540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.542 5.542 3 C 0.210 3.790 4 C -0.522 4.522 5 H 0.061 0.939 6 C -0.002 4.002 7 N -0.934 5.934 8 Si 0.969 3.031 9 H -0.271 1.271 10 H -0.282 1.282 11 H -0.266 1.266 12 C 0.026 3.974 13 C 0.124 3.876 14 H 0.063 0.937 15 O -0.559 6.559 16 C 0.045 3.955 17 N -0.695 5.695 18 C 0.072 3.928 19 C -0.018 4.018 20 C -0.129 4.129 21 C -0.141 4.141 22 C -0.042 4.042 23 C -0.136 4.136 24 C -0.085 4.085 25 C -0.164 4.164 26 C 0.078 3.922 27 F -0.152 7.152 28 C -0.157 4.157 29 H 0.007 0.993 30 H 0.053 0.947 31 H 0.083 0.917 32 H -0.043 1.043 33 H 0.005 0.995 34 H 0.263 0.737 35 H 0.098 0.902 36 H 0.026 0.974 37 H 0.379 0.621 38 H 0.056 0.944 39 H 0.077 0.923 40 H 0.348 0.652 41 H 0.046 0.954 42 H 0.074 0.926 43 H 0.055 0.945 44 H 0.061 0.939 45 H 0.048 0.952 46 H 0.061 0.939 47 H 0.063 0.937 48 H 0.062 0.938 49 H 0.146 0.854 50 H 0.159 0.841 51 H 0.149 0.851 52 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.374 -22.182 14.004 27.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.266 5.266 3 C 0.084 3.916 4 C -0.560 4.560 5 H 0.079 0.921 6 C -0.199 4.199 7 N -0.575 5.575 8 Si 0.793 3.207 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.190 1.190 12 C -0.103 4.103 13 C 0.064 3.936 14 H 0.081 0.919 15 O -0.365 6.365 16 C -0.085 4.085 17 N -0.329 5.329 18 C -0.057 4.057 19 C -0.018 4.018 20 C -0.187 4.187 21 C -0.199 4.199 22 C -0.043 4.043 23 C -0.154 4.154 24 C -0.103 4.103 25 C -0.183 4.183 26 C 0.059 3.941 27 F -0.131 7.131 28 C -0.176 4.176 29 H 0.026 0.974 30 H 0.072 0.928 31 H 0.102 0.898 32 H -0.025 1.025 33 H 0.023 0.977 34 H 0.072 0.928 35 H 0.116 0.884 36 H 0.044 0.956 37 H 0.226 0.774 38 H 0.074 0.926 39 H 0.096 0.904 40 H 0.169 0.831 41 H 0.064 0.936 42 H 0.093 0.907 43 H 0.074 0.926 44 H 0.080 0.920 45 H 0.067 0.933 46 H 0.080 0.920 47 H 0.082 0.918 48 H 0.081 0.919 49 H 0.163 0.837 50 H 0.177 0.823 51 H 0.166 0.834 52 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 10.182 -21.139 13.656 27.148 hybrid contribution -0.545 0.120 0.142 0.576 sum 9.636 -21.020 13.799 26.927 Atomic orbital electron populations 1.22218 0.87552 1.01122 0.99816 1.61950 1.07804 1.15120 1.41719 1.19371 0.93817 0.83885 0.94542 1.21482 1.34597 0.97429 1.02521 0.92127 1.25932 0.95113 0.98177 1.00713 1.70090 1.39382 1.11812 1.36215 0.85394 0.77965 0.78072 0.79257 1.19668 1.20766 1.19043 1.22802 0.96904 0.98787 0.91789 1.21716 0.93565 0.93599 0.84744 0.91899 1.86654 1.75709 1.34481 1.39645 1.22447 0.88414 0.99547 0.98087 1.60312 1.12204 1.54566 1.05801 1.22073 0.92948 0.96465 0.94167 1.19442 0.94502 0.94922 0.92934 1.21753 0.99572 0.95168 1.02171 1.21912 1.02418 0.99650 0.95889 1.19713 0.92402 0.96419 0.95743 1.21515 1.01260 0.99000 0.93646 1.21342 0.94062 0.96221 0.98653 1.21408 0.94736 1.03328 0.98817 1.17950 0.77713 1.01102 0.97381 1.91470 1.32896 1.91977 1.96756 1.21035 0.96299 1.01492 0.98767 0.97432 0.92789 0.89817 1.02541 0.97686 0.92777 0.88420 0.95562 0.77352 0.92558 0.90438 0.83111 0.93564 0.90739 0.92616 0.92015 0.93299 0.92037 0.91803 0.91943 0.83679 0.82317 0.83353 0.84720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.55 9.32 127.69 1.19 2.74 16 2 N -0.54 -23.23 4.60 -927.04 -4.27 -27.49 16 3 C 0.21 11.45 4.57 85.55 0.39 11.84 16 4 C -0.52 -30.48 8.54 25.60 0.22 -30.27 16 5 H 0.06 3.48 7.10 -2.91 -0.02 3.46 16 6 C 0.00 -0.10 5.46 84.66 0.46 0.37 16 7 N -0.93 -57.60 13.29 21.45 0.28 -57.32 16 8 Si 0.97 45.46 29.54 68.60 2.03 47.48 16 9 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 10 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 11 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 12 C 0.03 0.86 4.63 86.31 0.40 1.26 16 13 C 0.12 3.88 3.23 30.60 0.10 3.98 16 14 H 0.06 2.62 6.55 -2.39 -0.02 2.61 16 15 O -0.56 -17.34 12.75 -148.98 -1.90 -19.24 16 16 C 0.05 1.00 5.36 86.30 0.46 1.46 16 17 N -0.70 -15.08 5.71 -513.89 -2.94 -18.01 16 18 C 0.07 1.20 3.30 86.30 0.29 1.49 16 19 C -0.02 -0.29 0.67 -52.93 -0.04 -0.33 16 20 C -0.13 -2.54 8.13 71.98 0.59 -1.96 16 21 C -0.14 -2.22 7.96 71.98 0.57 -1.64 16 22 C -0.04 -0.67 4.76 -19.87 -0.09 -0.77 16 23 C -0.14 -1.82 8.97 22.27 0.20 -1.62 16 24 C -0.09 -0.97 10.04 22.26 0.22 -0.75 16 25 C -0.16 -2.27 10.03 22.31 0.22 -2.05 16 26 C 0.08 1.38 7.30 22.37 0.16 1.55 16 27 F -0.15 -3.08 17.27 44.97 0.78 -2.30 16 28 C -0.16 -2.72 8.69 22.31 0.19 -2.52 16 29 H 0.01 0.27 8.13 -2.39 -0.02 0.25 16 30 H 0.05 2.22 6.90 -2.39 -0.02 2.20 16 31 H 0.08 2.44 7.97 -2.39 -0.02 2.42 16 32 H -0.04 -2.54 8.11 -2.39 -0.02 -2.56 16 33 H 0.01 0.30 6.38 -2.38 -0.02 0.29 16 34 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 35 H 0.10 2.44 7.88 -2.39 -0.02 2.42 16 36 H 0.03 0.89 8.05 -2.39 -0.02 0.87 16 37 H 0.38 8.07 9.05 -74.06 -0.67 7.40 16 38 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.35 7.60 6.33 -89.70 -0.57 7.03 16 41 H 0.05 0.64 7.51 -2.39 -0.02 0.63 16 42 H 0.07 1.26 7.51 -2.39 -0.02 1.24 16 43 H 0.05 1.00 7.38 -2.39 -0.02 0.98 16 44 H 0.06 1.44 7.60 -2.39 -0.02 1.42 16 45 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 46 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 47 H 0.06 1.10 6.57 -2.39 -0.02 1.08 16 48 H 0.06 0.93 7.39 -2.38 -0.02 0.91 16 49 H 0.15 1.51 5.89 -2.91 -0.02 1.49 16 50 H 0.16 0.91 8.06 -2.91 -0.02 0.89 16 51 H 0.15 1.48 8.06 -2.91 -0.02 1.46 16 52 H 0.13 2.20 7.10 -2.91 -0.02 2.18 16 Total: -1.00 -70.76 411.85 -0.79 -71.55 By element: Atomic # 1 Polarization: 22.87 SS G_CDS: -0.32 Total: 22.56 kcal Atomic # 6 Polarization: -22.76 SS G_CDS: 5.54 Total: -17.22 kcal Atomic # 7 Polarization: -95.91 SS G_CDS: -6.92 Total: -102.83 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: -1.90 Total: -19.24 kcal Atomic # 9 Polarization: -3.08 SS G_CDS: 0.78 Total: -2.30 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.48 kcal Total: -70.76 -0.79 -71.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566114725.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.015 kcal (2) G-P(sol) polarization free energy of solvation -70.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds