Wall clock time and date at job start Sat Apr 11 2020 05:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 N 1.46497 * 109.47188 * 239.99790 * 2 1 3 6 6 N 1.28786 * 125.45150 * 0.03127 * 5 2 1 7 7 N 1.28996 * 108.73147 * 179.97438 * 6 5 2 8 8 C 1.33320 * 107.35081 * 359.97438 * 7 6 5 9 9 C 1.50703 * 126.54744 * 180.02562 * 8 7 6 10 10 N 1.46502 * 109.46951 * 89.97785 * 9 8 7 11 11 C 1.34772 * 119.99900 * 180.02562 * 10 9 8 12 12 O 1.21590 * 120.00332 * 0.02562 * 11 10 9 13 13 N 1.34781 * 120.00183 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00160 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47090 * 180.02562 * 14 13 11 16 16 C 1.53007 * 109.46757 * 299.99897 * 15 14 13 17 17 C 1.52998 * 109.47363 * 59.99702 * 15 14 13 18 18 C 1.52997 * 109.47011 * 180.02562 * 15 14 13 19 19 C 1.50698 * 109.47007 * 179.97438 * 18 15 14 20 20 H 1.08000 * 120.00120 * 0.02562 * 19 18 15 21 21 C 1.37881 * 120.00273 * 179.97438 * 19 18 15 22 22 N 1.31519 * 119.99807 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00346 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46729 * 90.00327 * 23 21 19 25 25 H 1.48497 * 109.47319 * 210.00423 * 23 21 19 26 26 H 1.48504 * 109.47001 * 330.00488 * 23 21 19 27 27 N 1.28881 * 125.45322 * 179.71586 * 5 2 1 28 28 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 29 29 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 30 30 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 32 32 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 34 34 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 35 35 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 36 36 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 37 37 H 1.08996 * 109.46784 * 209.97890 * 9 8 7 38 38 H 1.09005 * 109.46889 * 329.97924 * 9 8 7 39 39 H 0.97004 * 120.00025 * 0.02562 * 10 9 8 40 40 H 0.96998 * 119.99426 * 0.02562 * 13 11 10 41 41 H 1.09004 * 109.46601 * 300.00389 * 14 13 11 42 42 H 1.08995 * 109.46627 * 59.99906 * 14 13 11 43 43 H 1.08997 * 109.47188 * 60.00620 * 16 15 14 44 44 H 1.08996 * 109.46729 * 179.97438 * 16 15 14 45 45 H 1.08999 * 109.47109 * 299.99778 * 16 15 14 46 46 H 1.08996 * 109.47182 * 59.99966 * 17 15 14 47 47 H 1.09004 * 109.47204 * 180.02562 * 17 15 14 48 48 H 1.09004 * 109.47213 * 300.00017 * 17 15 14 49 49 H 1.09002 * 109.47003 * 299.99188 * 18 15 14 50 50 H 1.08999 * 109.47547 * 59.99799 * 18 15 14 51 51 H 0.96991 * 120.00195 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 2.0183 -0.6906 -1.1961 6 7 1.2782 -1.2172 -2.1091 7 7 2.0399 -1.7374 -3.0109 8 6 3.3017 -1.5220 -2.6381 9 6 4.5420 -1.9492 -3.3799 10 7 4.9431 -0.8912 -4.3106 11 6 6.0332 -1.0537 -5.0862 12 8 6.6835 -2.0785 -5.0140 13 7 6.4019 -0.0807 -5.9428 14 6 7.5872 -0.2571 -6.7856 15 6 7.7821 0.9846 -7.6580 16 6 6.5509 1.1832 -8.5445 17 6 7.9701 2.2118 -6.7639 18 6 9.0195 0.8001 -8.5386 19 6 9.2111 2.0228 -9.3984 20 1 8.5196 2.8491 -9.3238 21 6 10.2697 2.0872 -10.2794 22 7 11.1121 1.0812 -10.3698 23 14 10.5068 3.6025 -11.3457 24 1 11.3646 4.5814 -10.6308 25 1 11.1581 3.2128 -12.6220 26 1 9.1859 4.2180 -11.6318 27 7 3.2573 -0.8636 -1.5060 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6768 1.9562 0.8900 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 -1.7489 1.2492 35 1 3.1300 -0.7217 1.2490 36 1 1.6767 -0.2075 2.1393 37 1 5.3468 -2.1309 -2.6676 38 1 4.3358 -2.8636 -3.9362 39 1 4.4241 -0.0738 -4.3685 40 1 5.8829 0.7367 -6.0007 41 1 8.4643 -0.3983 -6.1540 42 1 7.4533 -1.1316 -7.4222 43 1 5.6690 1.3146 -7.9175 44 1 6.6895 2.0681 -9.1657 45 1 6.4170 0.3090 -9.1815 46 1 8.8470 2.0703 -6.1323 47 1 8.1084 3.0965 -7.3855 48 1 7.0881 2.3431 -6.1369 49 1 9.8968 0.6583 -7.9074 50 1 8.8852 -0.0741 -9.1756 51 1 11.8566 1.1263 -10.9899 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594243222.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:30:39 Heat of formation + Delta-G solvation = 55.355651 kcal Electronic energy + Delta-G solvation = -29134.045551 eV Core-core repulsion = 25105.380674 eV Total energy + Delta-G solvation = -4028.664877 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.217 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.52262 -41.16404 -38.90108 -38.60619 -36.24258 -35.22596 -34.54700 -33.98866 -33.14876 -29.42763 -28.85368 -28.51218 -28.26060 -27.93636 -27.04027 -25.66592 -24.78030 -23.26947 -22.00958 -21.65948 -20.22017 -19.25945 -18.42373 -18.33381 -17.96827 -17.30695 -16.78067 -16.53521 -16.01974 -15.53723 -15.51945 -15.26391 -15.17384 -15.09363 -14.71266 -14.44871 -14.39290 -14.29410 -13.91335 -13.87933 -13.54441 -13.45386 -13.22415 -12.96406 -12.85030 -12.83391 -12.70777 -12.58646 -12.56195 -12.30955 -12.20474 -12.19468 -12.00985 -11.98596 -11.95252 -11.59024 -11.50831 -11.23360 -10.95267 -10.83013 -10.48973 -10.45164 -9.81313 -8.11706 -6.19220 0.10246 0.73714 0.86150 1.43668 1.44245 1.54484 1.80694 2.13160 2.45886 2.63208 3.06386 3.22602 3.31290 3.51986 3.56127 3.66146 4.00209 4.12953 4.16443 4.25674 4.38185 4.45120 4.52821 4.53754 4.57421 4.62043 4.70462 4.71715 4.73305 4.74372 4.77392 4.82223 4.99624 5.03978 5.12667 5.13762 5.15007 5.22705 5.24696 5.28455 5.41993 5.50684 5.53183 5.56455 5.61293 5.83704 5.89559 5.92989 6.33594 6.95498 7.02544 7.22928 7.48098 7.53403 9.00692 Molecular weight = 338.22amu Principal moments of inertia in cm(-1) A = 0.023564 B = 0.001780 C = 0.001722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.985500 B =15726.355108 C =16251.746730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.162 3.838 3 C -0.156 4.156 4 C -0.156 4.156 5 N -0.115 5.115 6 N -0.071 5.071 7 N -0.296 5.296 8 C 0.145 3.855 9 C 0.247 3.753 10 N -0.729 5.729 11 C 0.708 3.292 12 O -0.631 6.631 13 N -0.722 5.722 14 C 0.161 3.839 15 C -0.064 4.064 16 C -0.121 4.121 17 C -0.121 4.121 18 C 0.040 3.960 19 C -0.513 4.513 20 H 0.072 0.928 21 C -0.007 4.007 22 N -0.937 5.937 23 Si 0.959 3.041 24 H -0.276 1.276 25 H -0.290 1.290 26 H -0.260 1.260 27 N -0.290 5.290 28 H 0.066 0.934 29 H 0.123 0.877 30 H 0.067 0.933 31 H 0.123 0.877 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.123 0.877 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.408 0.592 40 H 0.409 0.591 41 H 0.047 0.953 42 H 0.046 0.954 43 H 0.067 0.933 44 H 0.055 0.945 45 H 0.037 0.963 46 H 0.038 0.962 47 H 0.055 0.945 48 H 0.068 0.932 49 H -0.012 1.012 50 H -0.013 1.013 51 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.833 1.937 26.755 36.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.084 3.916 3 C -0.214 4.214 4 C -0.214 4.214 5 N -0.031 5.031 6 N -0.063 5.063 7 N -0.167 5.167 8 C -0.138 4.138 9 C 0.120 3.880 10 N -0.387 5.387 11 C 0.407 3.593 12 O -0.512 6.512 13 N -0.378 5.378 14 C 0.037 3.963 15 C -0.065 4.065 16 C -0.178 4.178 17 C -0.178 4.178 18 C 0.002 3.998 19 C -0.551 4.551 20 H 0.090 0.910 21 C -0.203 4.203 22 N -0.579 5.579 23 Si 0.784 3.216 24 H -0.202 1.202 25 H -0.216 1.216 26 H -0.184 1.184 27 N -0.142 5.142 28 H 0.086 0.914 29 H 0.141 0.859 30 H 0.086 0.914 31 H 0.141 0.859 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.142 0.858 37 H 0.117 0.883 38 H 0.115 0.885 39 H 0.243 0.757 40 H 0.246 0.754 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.086 0.914 44 H 0.074 0.926 45 H 0.056 0.944 46 H 0.057 0.943 47 H 0.074 0.926 48 H 0.087 0.913 49 H 0.006 0.994 50 H 0.005 0.995 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -24.774 1.035 26.881 36.571 hybrid contribution 0.891 0.795 -1.201 1.693 sum -23.883 1.830 25.681 35.117 Atomic orbital electron populations 1.22151 0.88623 1.04482 1.05581 1.22042 0.97643 0.93342 0.78607 1.22274 1.02647 0.91130 1.05364 1.22277 1.02648 1.00958 0.95518 1.51113 1.00530 1.33241 1.18237 1.78926 1.22009 1.09421 0.95934 1.75896 1.01223 1.19162 1.20439 1.25449 0.95297 1.00396 0.92608 1.19071 0.88328 0.90196 0.90420 1.44710 1.29322 1.21946 1.42732 1.15893 0.80752 0.83403 0.79237 1.90917 1.57170 1.30169 1.72925 1.44997 1.31110 1.20046 1.41665 1.21094 0.85975 0.97749 0.91531 1.20716 0.96999 0.93802 0.94977 1.21690 0.95745 1.01484 0.98927 1.21686 1.00626 0.97226 0.98265 1.18969 0.91774 0.95697 0.93347 1.21594 1.10305 1.02847 1.20322 0.90965 1.25956 0.96152 0.99153 0.99073 1.70122 1.16175 1.33109 1.38468 0.85539 0.78647 0.79532 0.77866 1.20181 1.21639 1.18421 1.74632 1.04082 1.18954 1.16539 0.91444 0.85876 0.91417 0.85868 0.91472 0.92129 0.92145 0.91467 0.85819 0.88301 0.88475 0.75677 0.75363 0.93476 0.93591 0.91383 0.92640 0.94394 0.94302 0.92613 0.91344 0.99400 0.99456 0.93221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 7.91 71.98 0.57 -0.11 16 2 C 0.16 1.27 1.30 3.60 0.00 1.27 16 3 C -0.16 -0.81 8.66 71.98 0.62 -0.19 16 4 C -0.16 -0.78 8.67 71.98 0.62 -0.15 16 5 N -0.12 -1.88 3.73 -152.40 -0.57 -2.45 16 6 N -0.07 -1.47 12.24 37.02 0.45 -1.01 16 7 N -0.30 -7.01 12.50 -51.26 -0.64 -7.65 16 8 C 0.15 3.07 7.74 138.55 1.07 4.14 16 9 C 0.25 5.25 6.30 85.63 0.54 5.79 16 10 N -0.73 -16.12 5.55 -482.29 -2.68 -18.80 16 11 C 0.71 21.15 8.57 179.05 1.53 22.68 16 12 O -0.63 -24.51 16.34 -4.00 -0.07 -24.57 16 13 N -0.72 -20.25 4.96 -478.53 -2.37 -22.63 16 14 C 0.16 5.81 4.56 86.38 0.39 6.20 16 15 C -0.06 -2.43 0.54 -52.18 -0.03 -2.46 16 16 C -0.12 -4.10 8.05 71.98 0.58 -3.52 16 17 C -0.12 -4.03 8.05 71.98 0.58 -3.45 16 18 C 0.04 2.03 4.04 29.85 0.12 2.15 16 19 C -0.51 -27.50 7.65 25.60 0.20 -27.30 16 20 H 0.07 3.62 5.68 -2.91 -0.02 3.60 16 21 C -0.01 -0.37 5.46 84.65 0.46 0.09 16 22 N -0.94 -57.20 13.29 21.45 0.28 -56.91 16 23 Si 0.96 43.75 29.54 68.60 2.03 45.77 16 24 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 25 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 26 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 27 N -0.29 -5.58 11.83 -51.20 -0.61 -6.18 16 28 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.12 -0.26 8.14 -2.39 -0.02 -0.28 16 30 H 0.07 0.44 8.14 -2.38 -0.02 0.42 16 31 H 0.12 -0.15 8.14 -2.39 -0.02 -0.17 16 32 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 34 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 35 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.12 -0.19 8.14 -2.39 -0.02 -0.21 16 37 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.10 2.15 8.14 -2.38 -0.02 2.13 16 39 H 0.41 7.19 8.48 -92.71 -0.79 6.40 16 40 H 0.41 8.95 6.18 -92.71 -0.57 8.38 16 41 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 42 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.07 1.75 6.86 -2.39 -0.02 1.74 16 44 H 0.05 2.01 6.62 -2.39 -0.02 1.99 16 45 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 46 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 47 H 0.05 1.99 6.62 -2.38 -0.02 1.98 16 48 H 0.07 1.73 6.86 -2.39 -0.02 1.71 16 49 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 50 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 51 H 0.26 15.02 8.31 -92.72 -0.77 14.25 16 Total: -1.00 -75.48 412.79 2.68 -72.80 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: -0.42 Total: 16.49 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: 7.27 Total: 5.14 kcal Atomic # 7 Polarization: -109.50 SS G_CDS: -6.13 Total: -115.63 kcal Atomic # 8 Polarization: -24.51 SS G_CDS: -0.07 Total: -24.57 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.77 kcal Total: -75.48 2.68 -72.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594243222.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.153 kcal (2) G-P(sol) polarization free energy of solvation -75.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds