Wall clock time and date at job start Sat Apr 11 2020 05:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34775 * 120.00085 * 2 1 4 4 O 1.21286 * 119.99830 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00255 * 179.97438 * 3 2 1 6 6 H 1.09001 * 110.05886 * 26.65683 * 5 3 2 7 7 C 1.54266 * 110.03493 * 148.07799 * 5 3 2 8 8 C 1.54885 * 104.19819 * 142.89373 * 7 5 3 9 9 C 1.55009 * 102.75409 * 322.04527 * 8 7 5 10 10 C 1.53878 * 110.03141 * 265.24087 * 5 3 2 11 11 H 1.08994 * 110.03065 * 121.42706 * 10 5 3 12 12 N 1.46505 * 110.03097 * 0.04957 * 10 5 3 13 13 C 1.34773 * 119.99710 * 150.62197 * 12 10 5 14 14 O 1.21584 * 120.00110 * 5.17470 * 13 12 10 15 15 N 1.34776 * 119.99855 * 185.16989 * 13 12 10 16 16 C 1.47081 * 120.88431 * 184.93401 * 15 13 12 17 17 C 1.53692 * 108.27573 * 128.75580 * 16 15 13 18 18 N 1.46902 * 109.25815 * 54.08831 * 17 16 15 19 19 C 1.46894 * 111.00282 * 172.60636 * 18 17 16 20 20 C 1.50700 * 109.47187 * 294.29993 * 19 18 17 21 21 H 1.08004 * 119.99757 * 0.02562 * 20 19 18 22 22 C 1.37874 * 120.00348 * 179.97438 * 20 19 18 23 23 N 1.31516 * 120.00405 * 179.97438 * 22 20 19 24 24 Si 1.86806 * 119.99655 * 0.02562 * 22 20 19 25 25 H 1.48499 * 109.47379 * 90.00226 * 24 22 20 26 26 H 1.48505 * 109.46606 * 209.99955 * 24 22 20 27 27 H 1.48496 * 109.47242 * 329.99671 * 24 22 20 28 28 C 1.46898 * 111.26600 * 296.75236 * 18 17 16 29 29 C 1.47088 * 120.88031 * 5.21493 * 15 13 12 30 30 H 1.08995 * 109.47316 * 300.00554 * 1 2 3 31 31 H 1.09003 * 109.47131 * 60.00314 * 1 2 3 32 32 H 1.08995 * 109.47188 * 179.97438 * 1 2 3 33 33 H 0.97001 * 120.00139 * 179.97438 * 2 1 3 34 34 H 1.09003 * 110.48384 * 261.57089 * 7 5 3 35 35 H 1.08999 * 110.48574 * 24.21154 * 7 5 3 36 36 H 1.09001 * 110.75730 * 80.37476 * 8 7 5 37 37 H 1.08998 * 110.75527 * 203.55673 * 8 7 5 38 38 H 1.09000 * 110.50151 * 279.29551 * 9 8 7 39 39 H 1.08997 * 110.52357 * 156.61668 * 9 8 7 40 40 H 0.96996 * 119.99447 * 330.61468 * 12 10 5 41 41 H 1.08999 * 109.62907 * 248.52938 * 16 15 13 42 42 H 1.08997 * 109.62648 * 9.10743 * 16 15 13 43 43 H 1.08997 * 109.65021 * 294.08253 * 17 16 15 44 44 H 1.08999 * 109.42127 * 173.95095 * 17 16 15 45 45 H 1.09009 * 109.47436 * 54.29908 * 19 18 17 46 46 H 1.09000 * 109.47142 * 174.29679 * 19 18 17 47 47 H 0.96999 * 120.00001 * 180.02562 * 23 22 20 48 48 H 1.09002 * 109.49849 * 303.14415 * 28 18 17 49 49 H 1.09007 * 109.49667 * 183.06280 * 28 18 17 50 50 H 1.09002 * 109.62532 * 350.89908 * 29 15 13 51 51 H 1.08999 * 109.62404 * 111.47507 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5324 2.2175 -0.0005 5 6 3.6459 1.1672 0.0006 6 1 4.0199 0.2521 -0.4584 7 6 4.1746 2.3972 -0.7658 8 6 5.4295 2.8311 0.0316 9 6 5.0024 2.5864 1.5015 10 6 4.1724 1.2875 1.4415 11 1 4.8018 0.4307 1.6817 12 7 3.0507 1.3647 2.3808 13 6 3.1897 0.8947 3.6362 14 8 4.2717 0.4932 4.0188 15 7 2.1292 0.8698 4.4677 16 6 2.2809 0.4627 5.8728 17 6 1.6398 1.5422 6.7593 18 7 0.2546 1.7664 6.3244 19 6 -0.4501 2.6613 7.2519 20 6 -0.5921 1.9856 8.5915 21 1 -0.1979 0.9910 8.7391 22 6 -1.2244 2.6375 9.6289 23 7 -1.3488 2.0476 10.7977 24 14 -1.9057 4.3580 9.3737 25 1 -3.3110 4.2691 8.9021 26 1 -1.8606 5.1035 10.6573 27 1 -1.0871 5.0692 8.3593 28 6 0.2048 2.2863 4.9514 29 6 0.7883 1.2433 3.9923 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.9500 -0.8400 0.0004 34 1 4.4463 2.1235 -1.7854 35 1 3.4304 3.1936 -0.7691 36 1 6.2870 2.2111 -0.2300 37 1 5.6503 3.8848 -0.1389 38 1 4.3915 3.4131 1.8642 39 1 5.8779 2.4507 2.1363 40 1 2.2083 1.7542 2.0991 41 1 1.7805 -0.4922 6.0335 42 1 3.3396 0.3697 6.1148 43 1 2.2034 2.4709 6.6715 44 1 1.6457 1.2094 7.7972 45 1 0.1182 3.5841 7.3690 46 1 -1.4386 2.8913 6.8544 47 1 -1.7940 2.5061 11.5274 48 1 0.7885 3.2048 4.8887 49 1 -0.8299 2.4931 4.6780 50 1 0.8598 1.6664 2.9903 51 1 0.1472 0.3619 3.9757 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601588899.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:31:04 Heat of formation + Delta-G solvation = -47.804387 kcal Electronic energy + Delta-G solvation = -31201.201275 eV Core-core repulsion = 27135.770292 eV Total energy + Delta-G solvation = -4065.430983 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.14392 -39.84268 -38.06162 -37.19992 -34.96862 -34.50492 -33.72748 -32.33896 -30.75585 -30.10253 -28.93959 -27.66219 -26.73609 -25.51760 -23.35392 -22.18065 -21.97386 -21.12527 -20.73351 -20.04545 -19.51259 -18.20027 -17.72441 -16.80728 -16.46760 -16.05136 -15.65487 -15.44354 -15.32416 -14.86939 -14.65210 -14.55676 -14.28814 -14.05686 -13.97054 -13.75038 -13.49213 -13.15968 -13.11247 -12.64978 -12.58878 -12.42086 -12.14610 -11.86454 -11.83291 -11.60833 -11.39268 -11.27255 -11.21806 -10.95152 -10.93236 -10.77851 -10.55025 -10.38159 -10.20577 -9.99347 -9.89260 -9.52899 -9.33766 -9.20879 -8.60142 -8.39730 -7.46102 -6.08392 -4.06316 2.18509 2.65121 2.83736 3.23499 3.26319 3.34164 3.36028 3.83931 4.11783 4.15866 4.34981 4.39167 4.60614 4.77328 4.93096 4.96845 5.02455 5.09237 5.12951 5.15264 5.18906 5.22029 5.31250 5.32257 5.35552 5.47274 5.54932 5.58738 5.67538 5.75820 5.77556 5.88956 5.90565 5.96291 5.97723 6.06664 6.09391 6.35284 6.44223 6.50109 6.60072 6.81134 6.93229 7.00786 7.05169 7.52815 7.78316 7.80000 7.95060 7.97774 8.60331 8.63576 8.99213 9.53020 11.04473 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.016698 B = 0.002783 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.395163 B =10058.750120 C =10496.640152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.731 5.731 3 C 0.520 3.480 4 O -0.537 6.537 5 C -0.124 4.124 6 H 0.100 0.900 7 C -0.112 4.112 8 C -0.122 4.122 9 C -0.135 4.135 10 C 0.175 3.825 11 H 0.102 0.898 12 N -0.749 5.749 13 C 0.708 3.292 14 O -0.594 6.594 15 N -0.624 5.624 16 C 0.134 3.866 17 C 0.049 3.951 18 N -0.525 5.525 19 C 0.163 3.837 20 C -0.511 4.511 21 H 0.082 0.918 22 C 0.069 3.931 23 N -0.899 5.899 24 Si 0.875 3.125 25 H -0.276 1.276 26 H -0.286 1.286 27 H -0.269 1.269 28 C 0.038 3.962 29 C 0.121 3.879 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.403 0.597 34 H 0.071 0.929 35 H 0.087 0.913 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.398 0.602 41 H 0.072 0.928 42 H 0.090 0.910 43 H 0.025 0.975 44 H 0.103 0.897 45 H -0.011 1.011 46 H 0.025 0.975 47 H 0.264 0.736 48 H 0.027 0.973 49 H 0.081 0.919 50 H 0.067 0.933 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.671 -3.671 -26.663 28.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.382 5.382 3 C 0.307 3.693 4 O -0.414 6.414 5 C -0.146 4.146 6 H 0.119 0.881 7 C -0.150 4.150 8 C -0.160 4.160 9 C -0.173 4.173 10 C 0.068 3.932 11 H 0.120 0.880 12 N -0.410 5.410 13 C 0.410 3.590 14 O -0.473 6.473 15 N -0.361 5.361 16 C 0.011 3.989 17 C -0.080 4.080 18 N -0.249 5.249 19 C 0.036 3.964 20 C -0.549 4.549 21 H 0.100 0.900 22 C -0.132 4.132 23 N -0.537 5.537 24 Si 0.702 3.298 25 H -0.201 1.201 26 H -0.212 1.212 27 H -0.194 1.194 28 C -0.092 4.092 29 C -0.003 4.003 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.096 0.904 33 H 0.237 0.763 34 H 0.090 0.910 35 H 0.106 0.894 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.238 0.762 41 H 0.091 0.909 42 H 0.108 0.892 43 H 0.043 0.957 44 H 0.121 0.879 45 H 0.006 0.994 46 H 0.043 0.957 47 H 0.074 0.926 48 H 0.045 0.955 49 H 0.099 0.901 50 H 0.086 0.914 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 9.650 -3.657 -26.178 28.139 hybrid contribution -0.458 1.476 -0.154 1.553 sum 9.192 -2.181 -26.333 27.976 Atomic orbital electron populations 1.21602 0.79267 1.02607 1.02554 1.45895 1.08036 1.08762 1.75493 1.20473 0.89936 0.83759 0.75143 1.90738 1.70156 1.31111 1.49350 1.22373 0.92028 1.02245 0.97993 0.88130 1.22388 0.98193 0.96339 0.98104 1.22476 0.97160 1.01772 0.94549 1.22845 1.00199 0.97383 0.96920 1.21334 0.87217 0.99921 0.84711 0.87972 1.45677 1.16826 1.66663 1.11851 1.15832 0.84068 0.78529 0.80591 1.90881 1.25494 1.55118 1.75818 1.47421 1.06728 1.70464 1.11500 1.21835 1.01657 0.97900 0.77483 1.22503 0.88383 0.96697 1.00383 1.61902 1.14024 1.48585 1.00433 1.20179 0.93004 0.90702 0.92467 1.21005 1.37500 1.03763 0.92654 0.90008 1.24890 0.95686 0.97595 0.95068 1.69889 1.43587 1.37920 1.02353 0.86874 0.79891 0.85289 0.77760 1.20123 1.21171 1.19350 1.22429 1.00569 0.94997 0.91184 1.21723 0.83403 0.98906 0.96289 0.91894 0.92068 0.90443 0.76325 0.90992 0.89420 0.91063 0.90856 0.90804 0.90483 0.76164 0.90927 0.89173 0.95679 0.87880 0.99362 0.95672 0.92610 0.95454 0.90094 0.91438 0.90590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.54 10.70 59.85 0.64 1.18 16 2 N -0.73 -5.00 5.71 -67.08 -0.38 -5.39 16 3 C 0.52 4.79 4.96 -10.99 -0.05 4.73 16 4 O -0.54 -6.77 14.98 5.55 0.08 -6.68 16 5 C -0.12 -0.93 3.29 -90.65 -0.30 -1.22 16 6 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 7 C -0.11 -0.81 6.32 -25.07 -0.16 -0.97 16 8 C -0.12 -0.84 6.91 -24.68 -0.17 -1.02 16 9 C -0.13 -1.29 6.54 -25.01 -0.16 -1.46 16 10 C 0.17 1.72 3.26 -66.81 -0.22 1.50 16 11 H 0.10 1.05 7.51 -51.93 -0.39 0.66 16 12 N -0.75 -9.14 4.44 -57.58 -0.26 -9.40 16 13 C 0.71 10.94 8.30 -86.92 -0.72 10.22 16 14 O -0.59 -10.83 15.46 5.29 0.08 -10.75 16 15 N -0.62 -9.63 3.00 -177.91 -0.53 -10.17 16 16 C 0.13 2.23 6.61 -3.37 -0.02 2.21 16 17 C 0.05 0.95 5.47 -3.46 -0.02 0.93 16 18 N -0.52 -10.68 4.62 -235.47 -1.09 -11.77 16 19 C 0.16 3.88 3.79 -4.98 -0.02 3.86 16 20 C -0.51 -14.22 8.96 -34.44 -0.31 -14.53 16 21 H 0.08 2.46 7.37 -52.48 -0.39 2.07 16 22 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 23 N -0.90 -27.23 13.96 55.43 0.77 -26.45 16 24 Si 0.87 21.35 27.47 -169.99 -4.67 16.68 16 25 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 27 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 28 C 0.04 0.63 5.62 -3.70 -0.02 0.61 16 29 C 0.12 1.68 6.60 -3.60 -0.02 1.66 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.40 1.85 8.83 -40.82 -0.36 1.49 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.09 0.81 6.90 -51.93 -0.36 0.46 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.83 8.05 -51.93 -0.42 0.41 16 39 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.40 4.90 3.74 -40.82 -0.15 4.75 16 41 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.09 1.51 7.09 -51.93 -0.37 1.14 16 43 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.10 2.17 6.67 -51.93 -0.35 1.83 16 45 H -0.01 -0.28 7.18 -51.92 -0.37 -0.65 16 46 H 0.03 0.60 7.40 -51.93 -0.38 0.21 16 47 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 48 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.08 1.26 7.99 -51.93 -0.41 0.84 16 50 H 0.07 0.84 5.63 -51.93 -0.29 0.54 16 51 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 393.56 15.07 5.93 5.93 Total: -1.00 -34.18 393.56 -10.20 -44.38 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -8.48 Total: 4.04 kcal Atomic # 6 Polarization: 11.23 SS G_CDS: -1.65 Total: 9.58 kcal Atomic # 7 Polarization: -61.68 SS G_CDS: -1.49 Total: -63.17 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: 0.16 Total: -17.43 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.67 Total: 16.68 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.18 -10.20 -44.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601588899.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.429 kcal (2) G-P(sol) polarization free energy of solvation -34.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds