Wall clock time and date at job start Sat Apr 11 2020 05:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34775 * 120.00085 * 2 1 4 4 O 1.21286 * 119.99830 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00255 * 179.97438 * 3 2 1 6 6 H 1.09001 * 110.05886 * 26.65683 * 5 3 2 7 7 C 1.54266 * 110.03493 * 148.07799 * 5 3 2 8 8 C 1.54885 * 104.19819 * 142.89373 * 7 5 3 9 9 C 1.55009 * 102.75409 * 322.04527 * 8 7 5 10 10 C 1.53878 * 110.03141 * 265.24087 * 5 3 2 11 11 H 1.08994 * 110.03065 * 121.42706 * 10 5 3 12 12 N 1.46505 * 110.03097 * 0.04957 * 10 5 3 13 13 C 1.34773 * 119.99710 * 150.62197 * 12 10 5 14 14 O 1.21584 * 120.00110 * 5.17470 * 13 12 10 15 15 N 1.34776 * 119.99855 * 185.16989 * 13 12 10 16 16 C 1.47081 * 120.88431 * 184.93401 * 15 13 12 17 17 C 1.53692 * 108.27573 * 128.75580 * 16 15 13 18 18 N 1.46902 * 109.25815 * 54.08831 * 17 16 15 19 19 C 1.46894 * 111.00282 * 172.60636 * 18 17 16 20 20 C 1.50700 * 109.47187 * 294.29993 * 19 18 17 21 21 H 1.08004 * 119.99757 * 0.02562 * 20 19 18 22 22 C 1.37874 * 120.00348 * 179.97438 * 20 19 18 23 23 N 1.31516 * 120.00405 * 179.97438 * 22 20 19 24 24 Si 1.86806 * 119.99655 * 0.02562 * 22 20 19 25 25 H 1.48499 * 109.47379 * 90.00226 * 24 22 20 26 26 H 1.48505 * 109.46606 * 209.99955 * 24 22 20 27 27 H 1.48496 * 109.47242 * 329.99671 * 24 22 20 28 28 C 1.46898 * 111.26600 * 296.75236 * 18 17 16 29 29 C 1.47088 * 120.88031 * 5.21493 * 15 13 12 30 30 H 1.08995 * 109.47316 * 300.00554 * 1 2 3 31 31 H 1.09003 * 109.47131 * 60.00314 * 1 2 3 32 32 H 1.08995 * 109.47188 * 179.97438 * 1 2 3 33 33 H 0.97001 * 120.00139 * 179.97438 * 2 1 3 34 34 H 1.09003 * 110.48384 * 261.57089 * 7 5 3 35 35 H 1.08999 * 110.48574 * 24.21154 * 7 5 3 36 36 H 1.09001 * 110.75730 * 80.37476 * 8 7 5 37 37 H 1.08998 * 110.75527 * 203.55673 * 8 7 5 38 38 H 1.09000 * 110.50151 * 279.29551 * 9 8 7 39 39 H 1.08997 * 110.52357 * 156.61668 * 9 8 7 40 40 H 0.96996 * 119.99447 * 330.61468 * 12 10 5 41 41 H 1.08999 * 109.62907 * 248.52938 * 16 15 13 42 42 H 1.08997 * 109.62648 * 9.10743 * 16 15 13 43 43 H 1.08997 * 109.65021 * 294.08253 * 17 16 15 44 44 H 1.08999 * 109.42127 * 173.95095 * 17 16 15 45 45 H 1.09009 * 109.47436 * 54.29908 * 19 18 17 46 46 H 1.09000 * 109.47142 * 174.29679 * 19 18 17 47 47 H 0.96999 * 120.00001 * 180.02562 * 23 22 20 48 48 H 1.09002 * 109.49849 * 303.14415 * 28 18 17 49 49 H 1.09007 * 109.49667 * 183.06280 * 28 18 17 50 50 H 1.09002 * 109.62532 * 350.89908 * 29 15 13 51 51 H 1.08999 * 109.62404 * 111.47507 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5324 2.2175 -0.0005 5 6 3.6459 1.1672 0.0006 6 1 4.0199 0.2521 -0.4584 7 6 4.1746 2.3972 -0.7658 8 6 5.4295 2.8311 0.0316 9 6 5.0024 2.5864 1.5015 10 6 4.1724 1.2875 1.4415 11 1 4.8018 0.4307 1.6817 12 7 3.0507 1.3647 2.3808 13 6 3.1897 0.8947 3.6362 14 8 4.2717 0.4932 4.0188 15 7 2.1292 0.8698 4.4677 16 6 2.2809 0.4627 5.8728 17 6 1.6398 1.5422 6.7593 18 7 0.2546 1.7664 6.3244 19 6 -0.4501 2.6613 7.2519 20 6 -0.5921 1.9856 8.5915 21 1 -0.1979 0.9910 8.7391 22 6 -1.2244 2.6375 9.6289 23 7 -1.3488 2.0476 10.7977 24 14 -1.9057 4.3580 9.3737 25 1 -3.3110 4.2691 8.9021 26 1 -1.8606 5.1035 10.6573 27 1 -1.0871 5.0692 8.3593 28 6 0.2048 2.2863 4.9514 29 6 0.7883 1.2433 3.9923 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.9500 -0.8400 0.0004 34 1 4.4463 2.1235 -1.7854 35 1 3.4304 3.1936 -0.7691 36 1 6.2870 2.2111 -0.2300 37 1 5.6503 3.8848 -0.1389 38 1 4.3915 3.4131 1.8642 39 1 5.8779 2.4507 2.1363 40 1 2.2083 1.7542 2.0991 41 1 1.7805 -0.4922 6.0335 42 1 3.3396 0.3697 6.1148 43 1 2.2034 2.4709 6.6715 44 1 1.6457 1.2094 7.7972 45 1 0.1182 3.5841 7.3690 46 1 -1.4386 2.8913 6.8544 47 1 -1.7940 2.5061 11.5274 48 1 0.7885 3.2048 4.8887 49 1 -0.8299 2.4931 4.6780 50 1 0.8598 1.6664 2.9903 51 1 0.1472 0.3619 3.9757 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601588899.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:31:04 Heat of formation + Delta-G solvation = -73.719208 kcal Electronic energy + Delta-G solvation = -31202.325026 eV Core-core repulsion = 27135.770292 eV Total energy + Delta-G solvation = -4066.554734 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.04038 -40.90737 -39.27986 -38.17122 -36.02935 -35.62359 -34.85957 -34.30742 -32.10309 -30.77305 -30.56691 -28.65907 -27.44663 -26.97773 -24.73800 -23.66627 -22.84145 -22.35823 -21.66127 -20.81131 -20.72641 -19.38987 -18.93792 -18.50138 -17.25034 -17.12977 -16.57021 -16.52650 -16.38764 -16.15639 -16.05403 -15.72205 -15.60154 -15.31757 -15.09920 -14.88156 -14.63666 -14.50951 -14.33916 -13.87852 -13.70333 -13.31527 -13.27963 -13.07720 -12.89055 -12.58179 -12.52284 -12.49963 -12.36612 -12.27266 -12.05477 -11.97004 -11.91165 -11.88078 -11.54690 -11.48428 -11.25755 -10.91524 -10.78614 -10.29834 -10.13754 -9.67705 -9.10853 -8.28870 -6.32288 1.33971 1.35610 1.45363 1.46078 1.55462 2.01903 2.26103 2.33250 2.75103 3.02223 3.09550 3.48534 3.49838 3.77264 3.85348 3.97308 4.02928 4.17181 4.19440 4.33309 4.35078 4.40899 4.42937 4.44299 4.49617 4.50722 4.62980 4.65736 4.70667 4.77533 4.79101 4.88522 4.96651 4.98228 4.99983 5.02775 5.06186 5.16687 5.19337 5.33922 5.37116 5.47500 5.49856 5.51931 5.78679 5.95685 6.23442 6.49753 6.57297 6.73938 6.80740 7.18110 7.31232 7.43038 8.87343 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.016698 B = 0.002783 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.395163 B =10058.750120 C =10496.640152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.720 5.720 3 C 0.515 3.485 4 O -0.575 6.575 5 C -0.116 4.116 6 H 0.136 0.864 7 C -0.109 4.109 8 C -0.112 4.112 9 C -0.138 4.138 10 C 0.169 3.831 11 H 0.101 0.899 12 N -0.737 5.737 13 C 0.707 3.293 14 O -0.624 6.624 15 N -0.628 5.628 16 C 0.147 3.853 17 C 0.056 3.944 18 N -0.534 5.534 19 C 0.172 3.828 20 C -0.515 4.515 21 H 0.043 0.957 22 C 0.010 3.990 23 N -0.946 5.946 24 Si 0.945 3.055 25 H -0.262 1.262 26 H -0.283 1.283 27 H -0.256 1.256 28 C 0.036 3.964 29 C 0.131 3.869 30 H 0.050 0.950 31 H 0.055 0.945 32 H 0.104 0.896 33 H 0.416 0.584 34 H 0.096 0.904 35 H 0.064 0.936 36 H 0.091 0.909 37 H 0.076 0.924 38 H 0.052 0.948 39 H 0.067 0.933 40 H 0.400 0.600 41 H 0.078 0.922 42 H 0.088 0.912 43 H 0.016 0.984 44 H 0.075 0.925 45 H -0.018 1.018 46 H 0.035 0.965 47 H 0.267 0.733 48 H 0.022 0.978 49 H 0.097 0.903 50 H 0.088 0.912 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.669 -3.530 -29.798 31.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.371 5.371 3 C 0.302 3.698 4 O -0.455 6.455 5 C -0.138 4.138 6 H 0.154 0.846 7 C -0.147 4.147 8 C -0.150 4.150 9 C -0.177 4.177 10 C 0.063 3.937 11 H 0.119 0.881 12 N -0.397 5.397 13 C 0.408 3.592 14 O -0.505 6.505 15 N -0.364 5.364 16 C 0.023 3.977 17 C -0.073 4.073 18 N -0.258 5.258 19 C 0.045 3.955 20 C -0.554 4.554 21 H 0.062 0.938 22 C -0.187 4.187 23 N -0.586 5.586 24 Si 0.768 3.232 25 H -0.187 1.187 26 H -0.209 1.209 27 H -0.180 1.180 28 C -0.093 4.093 29 C 0.007 3.993 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.122 0.878 33 H 0.252 0.748 34 H 0.114 0.886 35 H 0.083 0.917 36 H 0.110 0.890 37 H 0.095 0.905 38 H 0.071 0.929 39 H 0.086 0.914 40 H 0.240 0.760 41 H 0.096 0.904 42 H 0.106 0.894 43 H 0.035 0.965 44 H 0.094 0.906 45 H 0.000 1.000 46 H 0.053 0.947 47 H 0.076 0.924 48 H 0.040 0.960 49 H 0.116 0.884 50 H 0.106 0.894 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 9.654 -3.548 -29.374 31.122 hybrid contribution -0.417 1.353 0.810 1.631 sum 9.236 -2.195 -28.564 30.100 Atomic orbital electron populations 1.21693 0.78936 1.04114 1.01669 1.45880 1.08382 1.08786 1.74050 1.20774 0.90612 0.83721 0.74716 1.90726 1.70990 1.32559 1.51255 1.22402 0.90957 1.04089 0.96357 0.84614 1.22367 0.97460 0.95498 0.99410 1.22456 0.97759 1.02547 0.92233 1.22822 0.99471 0.96567 0.98790 1.21560 0.86631 0.99894 0.85575 0.88078 1.45663 1.17540 1.65486 1.10971 1.15942 0.83456 0.78433 0.81323 1.90861 1.26560 1.56510 1.76556 1.47407 1.07488 1.70566 1.10951 1.21573 1.01161 0.96939 0.77991 1.22374 0.88173 0.97089 0.99668 1.61816 1.14188 1.48115 1.01694 1.19951 0.93795 0.90421 0.91351 1.21225 1.36758 1.02495 0.94895 0.93838 1.25794 0.96141 1.02184 0.94602 1.70038 1.45016 1.40081 1.03491 0.85755 0.79725 0.79676 0.78002 1.18663 1.20909 1.18046 1.22560 1.01858 0.95560 0.89282 1.21728 0.82554 0.98698 0.96271 0.93166 0.92606 0.87764 0.74778 0.88564 0.91744 0.89025 0.90485 0.92900 0.91442 0.76023 0.90416 0.89399 0.96540 0.90640 1.00017 0.94684 0.92413 0.95967 0.88444 0.89429 0.89297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.85 10.70 127.77 1.37 2.21 16 2 N -0.72 -7.95 5.71 -484.53 -2.77 -10.72 16 3 C 0.51 8.37 4.96 87.66 0.43 8.80 16 4 O -0.58 -13.82 14.98 -3.05 -0.05 -13.87 16 5 C -0.12 -1.42 3.29 -10.82 -0.04 -1.46 16 6 H 0.14 0.73 8.14 -2.39 -0.02 0.71 16 7 C -0.11 -1.31 6.32 31.67 0.20 -1.11 16 8 C -0.11 -1.31 6.91 31.93 0.22 -1.09 16 9 C -0.14 -2.52 6.54 31.71 0.21 -2.32 16 10 C 0.17 3.04 3.26 45.71 0.15 3.19 16 11 H 0.10 1.89 7.51 -2.39 -0.02 1.88 16 12 N -0.74 -16.98 4.44 -454.36 -2.02 -19.00 16 13 C 0.71 21.15 8.30 179.06 1.49 22.63 16 14 O -0.62 -22.43 15.46 -3.98 -0.06 -22.49 16 15 N -0.63 -18.73 3.00 -835.04 -2.51 -21.24 16 16 C 0.15 4.89 6.61 86.50 0.57 5.46 16 17 C 0.06 2.21 5.47 86.54 0.47 2.69 16 18 N -0.53 -21.60 4.62 -898.88 -4.15 -25.75 16 19 C 0.17 8.15 3.79 85.56 0.32 8.48 16 20 C -0.52 -29.41 8.96 25.60 0.23 -29.18 16 21 H 0.04 2.75 7.37 -2.91 -0.02 2.73 16 22 C 0.01 0.60 5.47 84.65 0.46 1.06 16 23 N -0.95 -58.76 13.96 21.45 0.30 -58.46 16 24 Si 0.94 43.93 27.47 68.60 1.88 45.81 16 25 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 26 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 27 H -0.26 -11.32 6.54 99.48 0.65 -10.67 16 28 C 0.04 1.16 5.62 86.38 0.49 1.64 16 29 C 0.13 3.39 6.60 86.35 0.57 3.96 16 30 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.42 2.43 8.83 -92.71 -0.82 1.61 16 34 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.06 1.12 6.90 -2.39 -0.02 1.10 16 36 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.05 1.18 8.05 -2.39 -0.02 1.16 16 39 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.40 9.22 3.74 -92.71 -0.35 8.87 16 41 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 42 H 0.09 2.99 7.09 -2.39 -0.02 2.97 16 43 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 44 H 0.08 3.37 6.67 -2.39 -0.02 3.35 16 45 H -0.02 -0.87 7.18 -2.38 -0.02 -0.89 16 46 H 0.04 1.60 7.40 -2.39 -0.02 1.59 16 47 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 48 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 49 H 0.10 2.79 7.99 -2.38 -0.02 2.77 16 50 H 0.09 1.97 5.63 -2.39 -0.01 1.95 16 51 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -76.15 393.56 -2.50 -78.65 By element: Atomic # 1 Polarization: 22.37 SS G_CDS: -0.28 Total: 22.10 kcal Atomic # 6 Polarization: 17.82 SS G_CDS: 7.15 Total: 24.97 kcal Atomic # 7 Polarization: -124.03 SS G_CDS: -11.14 Total: -135.17 kcal Atomic # 8 Polarization: -36.25 SS G_CDS: -0.11 Total: -36.36 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 1.88 Total: 45.81 kcal Total: -76.15 -2.50 -78.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601588899.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.929 kcal (2) G-P(sol) polarization free energy of solvation -76.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds