Wall clock time and date at job start Sat Apr 11 2020 05:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34777 * 119.99974 * 2 1 4 4 O 1.21286 * 119.99751 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00239 * 179.97438 * 3 2 1 6 6 H 1.08994 * 110.02065 * 300.70713 * 5 3 2 7 7 C 1.53875 * 110.02680 * 62.09394 * 5 3 2 8 8 C 1.54269 * 106.59556 * 119.33229 * 7 5 3 9 9 C 1.54883 * 104.19882 * 23.61354 * 8 7 5 10 10 C 1.54265 * 110.07364 * 179.28236 * 5 3 2 11 11 H 1.09007 * 110.48868 * 335.76614 * 10 5 3 12 12 N 1.46500 * 110.48703 * 98.40925 * 10 5 3 13 13 C 1.34775 * 120.00282 * 205.00360 * 12 10 5 14 14 O 1.21584 * 119.99594 * 354.90535 * 13 12 10 15 15 N 1.34775 * 120.00177 * 174.91534 * 13 12 10 16 16 C 1.47080 * 120.88194 * 184.71580 * 15 13 12 17 17 C 1.53695 * 108.27629 * 128.75164 * 16 15 13 18 18 N 1.46898 * 109.25827 * 54.08377 * 17 16 15 19 19 C 1.46901 * 110.99991 * 172.60480 * 18 17 16 20 20 C 1.50700 * 109.47176 * 294.29992 * 19 18 17 21 21 H 1.08000 * 119.99913 * 0.02562 * 20 19 18 22 22 C 1.37871 * 119.99906 * 180.02562 * 20 19 18 23 23 N 1.31515 * 119.99845 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 119.99986 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46894 * 60.00280 * 24 22 20 26 26 H 1.48503 * 109.47097 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.47582 * 300.00107 * 24 22 20 28 28 C 1.46903 * 111.26920 * 296.75500 * 18 17 16 29 29 C 1.47086 * 120.88206 * 4.98969 * 15 13 12 30 30 H 1.09003 * 109.46471 * 60.00334 * 1 2 3 31 31 H 1.09005 * 109.46838 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47792 * 300.00142 * 1 2 3 33 33 H 0.97002 * 120.00257 * 179.97438 * 2 1 3 34 34 H 1.08997 * 110.03291 * 238.61217 * 7 5 3 35 35 H 1.08995 * 110.03822 * 0.02562 * 7 5 3 36 36 H 1.09001 * 110.48197 * 142.28946 * 8 7 5 37 37 H 1.08999 * 110.48987 * 264.79264 * 8 7 5 38 38 H 1.08996 * 110.76288 * 80.36608 * 9 8 7 39 39 H 1.08999 * 110.75961 * 203.56019 * 9 8 7 40 40 H 0.97001 * 119.99598 * 24.99917 * 12 10 5 41 41 H 1.09004 * 109.62428 * 248.52040 * 16 15 13 42 42 H 1.08995 * 109.62649 * 9.09764 * 16 15 13 43 43 H 1.08997 * 109.64535 * 294.07644 * 17 16 15 44 44 H 1.08999 * 109.44007 * 173.95786 * 17 16 15 45 45 H 1.08998 * 109.47031 * 54.30761 * 19 18 17 46 46 H 1.09002 * 109.46921 * 174.29605 * 19 18 17 47 47 H 0.97007 * 120.00011 * 180.02562 * 23 22 20 48 48 H 1.08999 * 109.48958 * 303.14637 * 28 18 17 49 49 H 1.08991 * 109.51377 * 183.07629 * 28 18 17 50 50 H 1.09000 * 109.62556 * 350.89668 * 29 15 13 51 51 H 1.08997 * 109.63027 * 111.27989 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5324 2.2175 -0.0005 5 6 3.6459 1.1673 0.0006 6 1 4.0187 0.6445 0.8813 7 6 4.1734 0.4904 -1.2767 8 6 5.0049 1.5516 -2.0264 9 6 5.4312 2.5503 -0.9220 10 6 4.1753 2.6161 -0.0177 11 1 3.4318 3.2886 -0.4457 12 7 4.5392 3.0461 1.3347 13 6 4.5376 4.3568 1.6484 14 8 4.3248 5.1878 0.7868 15 7 4.7720 4.7464 2.9172 16 6 4.6736 6.1624 3.3025 17 6 3.7615 6.2641 4.5354 18 7 4.2649 5.3687 5.5856 19 6 3.5278 5.5635 6.8413 20 6 3.8027 6.9454 7.3760 21 1 4.4590 7.6124 6.8367 22 6 3.2165 7.3582 8.5536 23 7 2.4178 6.5457 9.2106 24 14 3.5577 9.0708 9.2167 25 1 3.1180 10.0830 8.2231 26 1 2.8135 9.2673 10.4867 27 1 5.0133 9.2235 9.4679 28 6 4.2143 3.9643 5.1579 29 6 5.1390 3.7675 3.9519 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.9500 -0.8400 0.0004 34 1 4.8023 -0.3607 -1.0157 35 1 3.3395 0.1623 -1.8971 36 1 5.8812 1.0945 -2.4863 37 1 4.3962 2.0505 -2.7805 38 1 6.2878 2.1691 -0.3661 39 1 5.6541 3.5276 -1.3499 40 1 4.7813 2.3874 2.0043 41 1 5.6650 6.5459 3.5440 42 1 4.2459 6.7366 2.4807 43 1 2.7464 5.9733 4.2653 44 1 3.7606 7.2905 4.9023 45 1 2.4595 5.4511 6.6567 46 1 3.8505 4.8208 7.5710 47 1 2.0049 6.8362 10.0390 48 1 3.1928 3.7056 4.8791 49 1 4.5418 3.3226 5.9758 50 1 5.0190 2.7577 3.5595 51 1 6.1752 3.9230 4.2520 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601588901.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:31:07 Heat of formation + Delta-G solvation = -54.462047 kcal Electronic energy + Delta-G solvation = -30454.722431 eV Core-core repulsion = 26389.002750 eV Total energy + Delta-G solvation = -4065.719681 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.80726 -39.83873 -37.98009 -37.10766 -34.95273 -34.36732 -33.66061 -32.31833 -30.63280 -30.15107 -28.56030 -27.33670 -26.69090 -25.34982 -23.22751 -22.31972 -21.94797 -21.15478 -20.55771 -20.31634 -19.30372 -18.04319 -17.41708 -16.77259 -16.30438 -16.18183 -15.54895 -15.28376 -15.02720 -14.98493 -14.65522 -14.40633 -14.01624 -13.88676 -13.82528 -13.70770 -13.44995 -13.20223 -13.00505 -12.69319 -12.57249 -12.17768 -12.09701 -11.95885 -11.71226 -11.48290 -11.25462 -11.17823 -11.07821 -10.97473 -10.79851 -10.71949 -10.56216 -10.46460 -10.05958 -9.90189 -9.79343 -9.47027 -9.25801 -9.05514 -8.45284 -8.25434 -7.28701 -6.03718 -4.05397 2.35300 2.71120 2.91421 3.34420 3.38136 3.40358 3.41471 3.91317 4.04751 4.22238 4.40030 4.41904 4.68016 4.80573 4.90653 4.96558 5.01715 5.14238 5.19291 5.20637 5.25258 5.27814 5.31408 5.40560 5.44178 5.47723 5.48580 5.64116 5.69572 5.81115 5.88328 5.93515 5.95804 6.01863 6.08499 6.12632 6.23517 6.47488 6.56297 6.62786 6.76102 7.09302 7.14677 7.25221 7.32070 7.76982 7.92481 8.03706 8.09223 8.16581 8.50860 8.79352 9.01711 9.59049 11.07157 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.017102 B = 0.002453 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.853210 B =11410.772489 C =12334.615555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.738 5.738 3 C 0.515 3.485 4 O -0.522 6.522 5 C -0.124 4.124 6 H 0.104 0.896 7 C -0.112 4.112 8 C -0.123 4.123 9 C -0.135 4.135 10 C 0.175 3.825 11 H 0.112 0.888 12 N -0.742 5.742 13 C 0.711 3.289 14 O -0.591 6.591 15 N -0.626 5.626 16 C 0.134 3.866 17 C 0.050 3.950 18 N -0.534 5.534 19 C 0.194 3.806 20 C -0.509 4.509 21 H 0.064 0.936 22 C 0.056 3.944 23 N -0.899 5.899 24 Si 0.899 3.101 25 H -0.276 1.276 26 H -0.288 1.288 27 H -0.276 1.276 28 C 0.041 3.959 29 C 0.120 3.880 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.060 0.940 33 H 0.401 0.599 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.391 0.609 41 H 0.070 0.930 42 H 0.088 0.912 43 H 0.025 0.975 44 H 0.097 0.903 45 H -0.009 1.009 46 H 0.031 0.969 47 H 0.262 0.738 48 H 0.026 0.974 49 H 0.079 0.921 50 H 0.066 0.934 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.913 -19.278 -21.011 28.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.390 5.390 3 C 0.301 3.699 4 O -0.397 6.397 5 C -0.146 4.146 6 H 0.122 0.878 7 C -0.150 4.150 8 C -0.161 4.161 9 C -0.174 4.174 10 C 0.069 3.931 11 H 0.130 0.870 12 N -0.399 5.399 13 C 0.413 3.587 14 O -0.470 6.470 15 N -0.363 5.363 16 C 0.011 3.989 17 C -0.079 4.079 18 N -0.260 5.260 19 C 0.069 3.931 20 C -0.548 4.548 21 H 0.082 0.918 22 C -0.146 4.146 23 N -0.539 5.539 24 Si 0.727 3.273 25 H -0.202 1.202 26 H -0.214 1.214 27 H -0.201 1.201 28 C -0.089 4.089 29 C -0.004 4.004 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.234 0.766 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.096 0.904 40 H 0.228 0.772 41 H 0.088 0.912 42 H 0.106 0.894 43 H 0.043 0.957 44 H 0.115 0.885 45 H 0.008 0.992 46 H 0.049 0.951 47 H 0.071 0.929 48 H 0.044 0.956 49 H 0.098 0.902 50 H 0.085 0.915 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.628 -17.761 -21.366 28.020 hybrid contribution -0.534 -0.319 0.923 1.113 sum 3.094 -18.081 -20.442 27.466 Atomic orbital electron populations 1.21549 0.79496 1.02165 1.02568 1.45785 1.07812 1.08610 1.76782 1.20546 0.89933 0.83685 0.75749 1.90783 1.70003 1.31110 1.47805 1.22239 0.92137 0.98948 1.01259 0.87832 1.22097 1.00018 0.98532 0.94355 1.22305 0.99692 0.96252 0.97830 1.22924 0.97712 1.00201 0.96552 1.21533 0.96670 0.92913 0.81992 0.86975 1.45234 1.74971 1.06327 1.13378 1.15771 0.77744 0.82581 0.82652 1.90883 1.57327 1.51343 1.47400 1.47395 1.72781 1.09301 1.06831 1.21815 1.00517 0.79584 0.96967 1.22455 0.94907 0.99874 0.90649 1.62081 1.57239 1.01835 1.04803 1.19714 0.90942 0.97805 0.84590 1.21110 1.27851 0.98843 1.06960 0.91798 1.24989 0.95129 0.97693 0.96766 1.69951 1.31132 1.35968 1.16805 0.86545 0.78399 0.84278 0.78104 1.20204 1.21395 1.20133 1.22372 0.97171 0.93091 0.96281 1.21731 0.99775 0.90645 0.88216 0.92197 0.90669 0.92085 0.76581 0.90388 0.91084 0.90916 0.91104 0.91015 0.90376 0.77216 0.91211 0.89372 0.95714 0.88518 0.99167 0.95126 0.92851 0.95590 0.90225 0.91533 0.90681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.58 10.70 59.85 0.64 1.22 16 2 N -0.74 -5.12 5.58 -67.08 -0.37 -5.49 16 3 C 0.52 5.40 6.92 -10.99 -0.08 5.32 16 4 O -0.52 -8.29 15.41 5.55 0.09 -8.20 16 5 C -0.12 -0.97 3.03 -90.65 -0.27 -1.25 16 6 H 0.10 0.60 7.73 -51.93 -0.40 0.20 16 7 C -0.11 -0.59 6.38 -25.61 -0.16 -0.76 16 8 C -0.12 -0.80 6.83 -25.07 -0.17 -0.97 16 9 C -0.13 -1.23 6.58 -24.74 -0.16 -1.39 16 10 C 0.18 1.99 2.50 -66.27 -0.17 1.82 16 11 H 0.11 1.74 6.38 -51.93 -0.33 1.41 16 12 N -0.74 -9.29 5.07 -57.05 -0.29 -9.58 16 13 C 0.71 11.90 8.30 -86.92 -0.72 11.18 16 14 O -0.59 -12.02 15.52 5.29 0.08 -11.94 16 15 N -0.63 -10.19 3.00 -177.91 -0.53 -10.73 16 16 C 0.13 2.36 6.61 -3.36 -0.02 2.34 16 17 C 0.05 1.02 5.47 -3.46 -0.02 1.00 16 18 N -0.53 -11.38 4.62 -235.47 -1.09 -12.47 16 19 C 0.19 5.03 4.72 -4.98 -0.02 5.01 16 20 C -0.51 -14.19 8.41 -34.44 -0.29 -14.48 16 21 H 0.06 1.75 7.13 -52.49 -0.37 1.38 16 22 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 23 N -0.90 -26.72 13.29 55.43 0.74 -25.98 16 24 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 27 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 28 C 0.04 0.70 5.62 -3.70 -0.02 0.68 16 29 C 0.12 1.67 6.59 -3.60 -0.02 1.64 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.40 1.41 8.81 -40.82 -0.36 1.05 16 34 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.07 0.36 7.61 -51.93 -0.39 -0.04 16 36 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.39 3.86 5.86 -40.82 -0.24 3.62 16 41 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 42 H 0.09 1.59 7.09 -51.93 -0.37 1.22 16 43 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.10 2.06 6.67 -51.93 -0.35 1.72 16 45 H -0.01 -0.27 8.12 -51.93 -0.42 -0.69 16 46 H 0.03 0.84 7.97 -51.93 -0.41 0.42 16 47 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 48 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 49 H 0.08 1.30 7.99 -51.93 -0.41 0.88 16 50 H 0.07 0.70 5.63 -51.93 -0.29 0.40 16 51 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 400.49 15.07 6.04 6.04 Total: -1.00 -36.59 400.49 -10.52 -47.11 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -8.57 Total: 1.74 kcal Atomic # 6 Polarization: 14.44 SS G_CDS: -1.59 Total: 12.85 kcal Atomic # 7 Polarization: -62.69 SS G_CDS: -1.55 Total: -64.24 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: 0.17 Total: -20.14 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -36.59 -10.52 -47.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601588901.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.347 kcal (2) G-P(sol) polarization free energy of solvation -36.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds