Wall clock time and date at job start Sat Apr 11 2020 05:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34777 * 119.99974 * 2 1 4 4 O 1.21286 * 119.99751 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00239 * 179.97438 * 3 2 1 6 6 H 1.08994 * 110.02065 * 300.70713 * 5 3 2 7 7 C 1.53875 * 110.02680 * 62.09394 * 5 3 2 8 8 C 1.54269 * 106.59556 * 119.33229 * 7 5 3 9 9 C 1.54883 * 104.19882 * 23.61354 * 8 7 5 10 10 C 1.54265 * 110.07364 * 179.28236 * 5 3 2 11 11 H 1.09007 * 110.48868 * 335.76614 * 10 5 3 12 12 N 1.46500 * 110.48703 * 98.40925 * 10 5 3 13 13 C 1.34775 * 120.00282 * 205.00360 * 12 10 5 14 14 O 1.21584 * 119.99594 * 354.90535 * 13 12 10 15 15 N 1.34775 * 120.00177 * 174.91534 * 13 12 10 16 16 C 1.47080 * 120.88194 * 184.71580 * 15 13 12 17 17 C 1.53695 * 108.27629 * 128.75164 * 16 15 13 18 18 N 1.46898 * 109.25827 * 54.08377 * 17 16 15 19 19 C 1.46901 * 110.99991 * 172.60480 * 18 17 16 20 20 C 1.50700 * 109.47176 * 294.29992 * 19 18 17 21 21 H 1.08000 * 119.99913 * 0.02562 * 20 19 18 22 22 C 1.37871 * 119.99906 * 180.02562 * 20 19 18 23 23 N 1.31515 * 119.99845 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 119.99986 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46894 * 60.00280 * 24 22 20 26 26 H 1.48503 * 109.47097 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.47582 * 300.00107 * 24 22 20 28 28 C 1.46903 * 111.26920 * 296.75500 * 18 17 16 29 29 C 1.47086 * 120.88206 * 4.98969 * 15 13 12 30 30 H 1.09003 * 109.46471 * 60.00334 * 1 2 3 31 31 H 1.09005 * 109.46838 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47792 * 300.00142 * 1 2 3 33 33 H 0.97002 * 120.00257 * 179.97438 * 2 1 3 34 34 H 1.08997 * 110.03291 * 238.61217 * 7 5 3 35 35 H 1.08995 * 110.03822 * 0.02562 * 7 5 3 36 36 H 1.09001 * 110.48197 * 142.28946 * 8 7 5 37 37 H 1.08999 * 110.48987 * 264.79264 * 8 7 5 38 38 H 1.08996 * 110.76288 * 80.36608 * 9 8 7 39 39 H 1.08999 * 110.75961 * 203.56019 * 9 8 7 40 40 H 0.97001 * 119.99598 * 24.99917 * 12 10 5 41 41 H 1.09004 * 109.62428 * 248.52040 * 16 15 13 42 42 H 1.08995 * 109.62649 * 9.09764 * 16 15 13 43 43 H 1.08997 * 109.64535 * 294.07644 * 17 16 15 44 44 H 1.08999 * 109.44007 * 173.95786 * 17 16 15 45 45 H 1.08998 * 109.47031 * 54.30761 * 19 18 17 46 46 H 1.09002 * 109.46921 * 174.29605 * 19 18 17 47 47 H 0.97007 * 120.00011 * 180.02562 * 23 22 20 48 48 H 1.08999 * 109.48958 * 303.14637 * 28 18 17 49 49 H 1.08991 * 109.51377 * 183.07629 * 28 18 17 50 50 H 1.09000 * 109.62556 * 350.89668 * 29 15 13 51 51 H 1.08997 * 109.63027 * 111.27989 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5324 2.2175 -0.0005 5 6 3.6459 1.1673 0.0006 6 1 4.0187 0.6445 0.8813 7 6 4.1734 0.4904 -1.2767 8 6 5.0049 1.5516 -2.0264 9 6 5.4312 2.5503 -0.9220 10 6 4.1753 2.6161 -0.0177 11 1 3.4318 3.2886 -0.4457 12 7 4.5392 3.0461 1.3347 13 6 4.5376 4.3568 1.6484 14 8 4.3248 5.1878 0.7868 15 7 4.7720 4.7464 2.9172 16 6 4.6736 6.1624 3.3025 17 6 3.7615 6.2641 4.5354 18 7 4.2649 5.3687 5.5856 19 6 3.5278 5.5635 6.8413 20 6 3.8027 6.9454 7.3760 21 1 4.4590 7.6124 6.8367 22 6 3.2165 7.3582 8.5536 23 7 2.4178 6.5457 9.2106 24 14 3.5577 9.0708 9.2167 25 1 3.1180 10.0830 8.2231 26 1 2.8135 9.2673 10.4867 27 1 5.0133 9.2235 9.4679 28 6 4.2143 3.9643 5.1579 29 6 5.1390 3.7675 3.9519 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.9500 -0.8400 0.0004 34 1 4.8023 -0.3607 -1.0157 35 1 3.3395 0.1623 -1.8971 36 1 5.8812 1.0945 -2.4863 37 1 4.3962 2.0505 -2.7805 38 1 6.2878 2.1691 -0.3661 39 1 5.6541 3.5276 -1.3499 40 1 4.7813 2.3874 2.0043 41 1 5.6650 6.5459 3.5440 42 1 4.2459 6.7366 2.4807 43 1 2.7464 5.9733 4.2653 44 1 3.7606 7.2905 4.9023 45 1 2.4595 5.4511 6.6567 46 1 3.8505 4.8208 7.5710 47 1 2.0049 6.8362 10.0390 48 1 3.1928 3.7056 4.8791 49 1 4.5418 3.3226 5.9758 50 1 5.0190 2.7577 3.5595 51 1 6.1752 3.9230 4.2520 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601588901.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:31:06 Heat of formation + Delta-G solvation = -83.496982 kcal Electronic energy + Delta-G solvation = -30455.981480 eV Core-core repulsion = 26389.002750 eV Total energy + Delta-G solvation = -4066.978730 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.79393 -40.95860 -39.24464 -38.19894 -36.00019 -35.73327 -34.86426 -34.23632 -32.05185 -30.80875 -30.14431 -28.45924 -27.34755 -27.02171 -24.67841 -23.99136 -22.90304 -22.28689 -21.60499 -21.14905 -20.51307 -19.24034 -18.51086 -18.24706 -17.67872 -16.99371 -16.82577 -16.55623 -16.48512 -16.02172 -15.83735 -15.67743 -15.42204 -15.36412 -15.07957 -14.75605 -14.50471 -14.41700 -14.05813 -13.93440 -13.56682 -13.33488 -13.20048 -13.08424 -12.94837 -12.77541 -12.57437 -12.39847 -12.36165 -12.31620 -12.20862 -12.05515 -11.85270 -11.74157 -11.60602 -11.39966 -11.18276 -10.84998 -10.62212 -10.22867 -10.17099 -9.60366 -9.07725 -8.21764 -6.31732 1.41603 1.44560 1.52140 1.53910 1.59643 2.10745 2.23005 2.39998 2.85564 3.10311 3.20597 3.31882 3.61534 3.82925 3.92806 4.03075 4.11190 4.17167 4.22471 4.33287 4.39631 4.41450 4.44658 4.48572 4.52299 4.56005 4.58025 4.69090 4.73320 4.82192 4.91633 4.91768 4.99458 5.00181 5.08664 5.14872 5.16796 5.20860 5.23390 5.39328 5.40611 5.45056 5.58068 5.62612 5.91653 6.01618 6.22624 6.52623 6.55800 6.83359 6.93351 7.25096 7.37997 7.52534 8.89339 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.017102 B = 0.002453 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.853210 B =11410.772489 C =12334.615555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.718 5.718 3 C 0.507 3.493 4 O -0.589 6.589 5 C -0.113 4.113 6 H 0.137 0.863 7 C -0.102 4.102 8 C -0.120 4.120 9 C -0.129 4.129 10 C 0.166 3.834 11 H 0.062 0.938 12 N -0.725 5.725 13 C 0.705 3.295 14 O -0.634 6.634 15 N -0.630 5.630 16 C 0.146 3.854 17 C 0.058 3.942 18 N -0.535 5.535 19 C 0.209 3.791 20 C -0.525 4.525 21 H 0.066 0.934 22 C 0.002 3.998 23 N -0.935 5.935 24 Si 0.969 3.031 25 H -0.270 1.270 26 H -0.284 1.284 27 H -0.265 1.265 28 C 0.037 3.963 29 C 0.128 3.872 30 H 0.047 0.953 31 H 0.115 0.885 32 H 0.038 0.962 33 H 0.422 0.578 34 H 0.117 0.883 35 H 0.076 0.924 36 H 0.098 0.902 37 H 0.055 0.945 38 H 0.091 0.909 39 H 0.049 0.951 40 H 0.407 0.593 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.003 0.997 44 H 0.081 0.919 45 H -0.046 1.046 46 H 0.013 0.987 47 H 0.265 0.735 48 H 0.012 0.988 49 H 0.093 0.907 50 H 0.109 0.891 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.181 -22.076 -21.634 31.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.371 5.371 3 C 0.294 3.706 4 O -0.469 6.469 5 C -0.135 4.135 6 H 0.155 0.845 7 C -0.139 4.139 8 C -0.157 4.157 9 C -0.168 4.168 10 C 0.060 3.940 11 H 0.080 0.920 12 N -0.382 5.382 13 C 0.407 3.593 14 O -0.516 6.516 15 N -0.367 5.367 16 C 0.022 3.978 17 C -0.072 4.072 18 N -0.259 5.259 19 C 0.083 3.917 20 C -0.563 4.563 21 H 0.084 0.916 22 C -0.196 4.196 23 N -0.575 5.575 24 Si 0.793 3.207 25 H -0.195 1.195 26 H -0.209 1.209 27 H -0.190 1.190 28 C -0.092 4.092 29 C 0.005 3.995 30 H 0.065 0.935 31 H 0.134 0.866 32 H 0.057 0.943 33 H 0.259 0.741 34 H 0.135 0.865 35 H 0.094 0.906 36 H 0.116 0.884 37 H 0.074 0.926 38 H 0.110 0.890 39 H 0.068 0.932 40 H 0.247 0.753 41 H 0.101 0.899 42 H 0.098 0.902 43 H 0.021 0.979 44 H 0.099 0.901 45 H -0.028 1.028 46 H 0.031 0.969 47 H 0.073 0.927 48 H 0.030 0.970 49 H 0.112 0.888 50 H 0.127 0.873 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.927 -20.677 -22.003 30.770 hybrid contribution -1.315 0.481 1.077 1.766 sum 4.612 -20.197 -20.926 29.446 Atomic orbital electron populations 1.21636 0.79410 1.04223 1.00900 1.45674 1.08002 1.08630 1.74774 1.21122 0.91203 0.83525 0.74740 1.90771 1.71427 1.33600 1.51099 1.22256 0.90094 0.96869 1.04295 0.84500 1.22141 1.00464 0.98774 0.92568 1.22310 1.00689 0.95925 0.96824 1.22856 0.97130 0.99808 0.97032 1.21595 0.96886 0.94163 0.81349 0.92003 1.45104 1.73739 1.04962 1.14403 1.15991 0.77490 0.83616 0.82247 1.90854 1.59116 1.52923 1.48688 1.47414 1.72799 1.09105 1.07346 1.21564 1.00232 0.80925 0.95056 1.22359 0.94549 0.98806 0.91462 1.62021 1.55830 1.04459 1.03627 1.19372 0.89154 0.96740 0.86404 1.21441 1.27865 0.99734 1.07274 0.91607 1.25908 0.94738 1.01917 0.97046 1.70078 1.32108 1.38068 1.17283 0.85440 0.78708 0.79082 0.77430 1.19515 1.20929 1.18971 1.22540 0.97559 0.90689 0.98420 1.21860 0.99431 0.92145 0.86037 0.93467 0.86647 0.94304 0.74073 0.86476 0.90576 0.88374 0.92604 0.89046 0.93208 0.75325 0.89859 0.90195 0.97916 0.90088 1.02793 0.96850 0.92675 0.96998 0.88832 0.87306 0.88946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.03 10.70 127.77 1.37 2.40 16 2 N -0.72 -8.48 5.58 -484.51 -2.70 -11.18 16 3 C 0.51 10.22 6.92 87.66 0.61 10.83 16 4 O -0.59 -19.72 15.41 -3.05 -0.05 -19.77 16 5 C -0.11 -1.49 3.03 -10.82 -0.03 -1.52 16 6 H 0.14 0.91 7.73 -2.39 -0.02 0.90 16 7 C -0.10 -0.67 6.38 31.32 0.20 -0.47 16 8 C -0.12 -1.26 6.83 31.67 0.22 -1.05 16 9 C -0.13 -2.18 6.58 31.89 0.21 -1.97 16 10 C 0.17 3.69 2.50 46.07 0.12 3.81 16 11 H 0.06 2.07 6.38 -2.38 -0.02 2.05 16 12 N -0.72 -17.21 5.07 -452.67 -2.30 -19.51 16 13 C 0.70 23.62 8.30 179.06 1.49 25.11 16 14 O -0.63 -26.88 15.52 -3.98 -0.06 -26.94 16 15 N -0.63 -20.11 3.00 -835.04 -2.51 -22.61 16 16 C 0.15 5.19 6.61 86.50 0.57 5.77 16 17 C 0.06 2.41 5.47 86.54 0.47 2.89 16 18 N -0.53 -23.13 4.62 -898.89 -4.15 -27.29 16 19 C 0.21 11.24 4.72 85.56 0.40 11.64 16 20 C -0.52 -29.86 8.41 25.60 0.22 -29.64 16 21 H 0.07 3.64 7.13 -2.91 -0.02 3.62 16 22 C 0.00 0.11 5.46 84.65 0.46 0.58 16 23 N -0.93 -56.69 13.29 21.45 0.28 -56.40 16 24 Si 0.97 44.65 29.54 68.60 2.03 46.68 16 25 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 26 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 27 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 28 C 0.04 1.26 5.62 86.38 0.49 1.75 16 29 C 0.13 3.24 6.59 86.35 0.57 3.81 16 30 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.12 0.50 8.14 -2.38 -0.02 0.48 16 32 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.42 1.35 8.81 -92.71 -0.82 0.54 16 34 H 0.12 -0.01 8.14 -2.39 -0.02 -0.03 16 35 H 0.08 0.48 7.61 -2.39 -0.02 0.47 16 36 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.41 6.70 5.86 -92.71 -0.54 6.15 16 41 H 0.08 2.75 8.14 -2.38 -0.02 2.73 16 42 H 0.08 2.99 7.09 -2.39 -0.02 2.98 16 43 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 44 H 0.08 3.61 6.67 -2.39 -0.02 3.60 16 45 H -0.05 -2.73 8.12 -2.39 -0.02 -2.75 16 46 H 0.01 0.76 7.97 -2.39 -0.02 0.74 16 47 H 0.26 15.11 8.31 -92.70 -0.77 14.34 16 48 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 49 H 0.09 2.93 7.99 -2.39 -0.02 2.91 16 50 H 0.11 1.84 5.63 -2.39 -0.01 1.83 16 51 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -86.92 400.49 -2.53 -89.45 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -0.42 Total: 13.65 kcal Atomic # 6 Polarization: 26.57 SS G_CDS: 7.35 Total: 33.93 kcal Atomic # 7 Polarization: -125.62 SS G_CDS: -11.37 Total: -137.00 kcal Atomic # 8 Polarization: -46.60 SS G_CDS: -0.11 Total: -46.71 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -86.92 -2.53 -89.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601588901.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.953 kcal (2) G-P(sol) polarization free energy of solvation -86.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds