Wall clock time and date at job start Sat Apr 11 2020 05:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46903 * 111.00003 * 2 1 4 4 H 1.08995 * 109.52294 * 325.07790 * 3 2 1 5 5 C 1.53049 * 109.49419 * 204.99863 * 3 2 1 6 6 C 1.53036 * 109.53246 * 178.68181 * 5 3 2 7 7 C 1.53194 * 109.31538 * 61.36939 * 6 5 3 8 8 N 1.46926 * 108.77062 * 305.36022 * 7 6 5 9 9 C 1.34780 * 120.63212 * 233.58267 * 8 7 6 10 10 O 1.21349 * 120.00310 * 187.36736 * 9 8 7 11 11 C 1.49451 * 119.99653 * 7.37118 * 9 8 7 12 12 O 1.21345 * 120.00199 * 7.48454 * 11 9 8 13 13 N 1.34784 * 119.99918 * 187.47903 * 11 9 8 14 14 C 1.47077 * 120.88053 * 178.37953 * 13 11 9 15 15 C 1.53233 * 108.52055 * 231.16870 * 14 13 11 16 16 N 1.46903 * 109.33915 * 306.16763 * 15 14 13 17 17 C 1.46907 * 111.00118 * 187.25444 * 16 15 14 18 18 C 1.50697 * 109.46990 * 170.00323 * 17 16 15 19 19 H 1.07991 * 120.00285 * 0.02562 * 18 17 16 20 20 C 1.37876 * 119.99678 * 179.72487 * 18 17 16 21 21 N 1.31516 * 120.00180 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99915 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47293 * 60.00320 * 22 20 18 24 24 H 1.48506 * 109.46935 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.46863 * 300.00026 * 22 20 18 26 26 C 1.46897 * 111.26775 * 63.11090 * 16 15 14 27 27 C 1.47083 * 120.87892 * 358.36377 * 13 11 9 28 28 C 1.46924 * 118.74023 * 53.86117 * 8 7 6 29 29 H 1.09005 * 109.46681 * 60.00526 * 1 2 3 30 30 H 1.09000 * 109.46730 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47397 * 300.00067 * 1 2 3 32 32 H 1.00906 * 111.00297 * 123.95446 * 2 1 3 33 33 H 1.09000 * 109.45663 * 58.66195 * 5 3 2 34 34 H 1.08990 * 109.45884 * 298.70204 * 5 3 2 35 35 H 1.09003 * 109.50206 * 301.41268 * 6 5 3 36 36 H 1.09006 * 109.49843 * 181.31626 * 6 5 3 37 37 H 1.08999 * 109.59036 * 185.57702 * 7 6 5 38 38 H 1.08995 * 109.70772 * 65.21419 * 7 6 5 39 39 H 1.09004 * 109.62162 * 111.45827 * 14 13 11 40 40 H 1.09001 * 109.62847 * 350.88298 * 14 13 11 41 41 H 1.09005 * 109.49128 * 186.21551 * 15 14 13 42 42 H 1.08996 * 109.52206 * 66.14370 * 15 14 13 43 43 H 1.09004 * 109.46666 * 50.00139 * 17 16 15 44 44 H 1.08996 * 109.46763 * 290.00553 * 17 16 15 45 45 H 0.97001 * 120.00102 * 179.97438 * 21 20 18 46 46 H 1.08999 * 109.49567 * 56.84986 * 26 16 15 47 47 H 1.09002 * 109.49739 * 176.93302 * 26 16 15 48 48 H 1.08997 * 109.62361 * 248.54205 * 27 13 11 49 49 H 1.08995 * 109.62711 * 9.12438 * 27 13 11 50 50 H 1.09003 * 109.58754 * 65.92766 * 28 8 7 51 51 H 1.09000 * 109.58826 * 186.34785 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 1.3396 2.0134 -0.5881 5 6 3.3992 1.3797 -0.6097 6 6 3.9354 2.8127 -0.6403 7 6 4.0270 3.3501 0.7914 8 7 2.7128 3.2112 1.4335 9 6 2.1131 4.2731 2.0072 10 8 1.0945 4.1213 2.6491 11 6 2.7025 5.6378 1.8528 12 8 3.6401 5.8123 1.1024 13 7 2.1927 6.6746 2.5468 14 6 2.7800 8.0185 2.4366 15 6 3.0518 8.5482 3.8485 16 7 1.8181 8.4728 4.6423 17 6 1.9897 9.1283 5.9457 18 6 0.6511 9.2494 6.6272 19 1 -0.2381 8.8762 6.1411 20 6 0.5625 9.8309 7.8742 21 7 1.6463 10.2795 8.4691 22 14 -1.0966 9.9803 8.7194 23 1 -1.6774 8.6273 8.9125 24 1 -0.9220 10.6365 10.0401 25 1 -2.0091 10.7952 7.8779 26 6 1.3746 7.0820 4.8069 27 6 1.0340 6.4921 3.4342 28 6 2.0675 1.8912 1.4438 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8306 -0.5261 0.7814 33 1 3.3563 0.9862 -1.6253 34 1 4.0605 0.7573 -0.0070 35 1 3.2613 3.4411 -1.2223 36 1 4.9256 2.8210 -1.0959 37 1 4.3136 4.4015 0.7695 38 1 4.7690 2.7807 1.3510 39 1 2.0829 8.6818 1.9244 40 1 3.7152 7.9648 1.8792 41 1 3.3840 9.5848 3.7903 42 1 3.8261 7.9441 4.3214 43 1 2.4143 10.1216 5.7997 44 1 2.6607 8.5339 6.5657 45 1 1.5839 10.6889 9.3463 46 1 2.1721 6.4979 5.2661 47 1 0.4905 7.0551 5.4439 48 1 0.1692 7.0087 3.0180 49 1 0.8150 5.4293 3.5365 50 1 2.6526 1.2032 2.0541 51 1 1.0609 1.9798 1.8525 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601592186.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:31:09 Heat of formation + Delta-G solvation = -16.815558 kcal Electronic energy + Delta-G solvation = -30675.998041 eV Core-core repulsion = 26611.910835 eV Total energy + Delta-G solvation = -4064.087206 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.31062 -39.44540 -38.17287 -37.75968 -35.72212 -34.39602 -32.74861 -32.40435 -30.86531 -30.17847 -28.54112 -26.83099 -25.53005 -25.37354 -23.73192 -23.09215 -22.70085 -21.76251 -21.02684 -20.10715 -19.09784 -17.31677 -17.17624 -16.46359 -16.36543 -16.27336 -15.89160 -15.30620 -14.84677 -14.78893 -14.72566 -14.56472 -14.37793 -14.18679 -14.14763 -13.88048 -13.58014 -13.33956 -13.08588 -12.93911 -12.81079 -12.45190 -12.29608 -11.96058 -11.75499 -11.63483 -11.38772 -11.32108 -11.22370 -11.08221 -10.97817 -10.77143 -10.70799 -10.55655 -10.15515 -9.80247 -9.41696 -9.30681 -8.83283 -8.75538 -8.62999 -8.46302 -7.34553 -6.06465 -4.08415 1.27481 2.12737 3.06364 3.24809 3.31701 3.35776 3.38692 3.74506 4.02244 4.36282 4.39027 4.45656 4.72102 4.75042 4.83392 4.89714 4.97274 5.05501 5.18444 5.26259 5.28498 5.29734 5.34222 5.38352 5.51858 5.52598 5.53965 5.61848 5.64883 5.70070 5.80038 5.81740 5.87346 5.98518 6.04730 6.18694 6.23385 6.42443 6.50782 6.54628 6.63804 6.80980 6.88927 7.20720 7.26003 7.30895 7.61053 7.73632 7.89340 8.00441 8.11000 8.46879 8.98562 9.56088 11.04315 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.018898 B = 0.002455 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.306070 B =11402.597144 C =12504.719601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.684 5.684 3 C 0.074 3.926 4 H 0.083 0.917 5 C -0.110 4.110 6 C -0.128 4.128 7 C 0.047 3.953 8 N -0.577 5.577 9 C 0.512 3.488 10 O -0.509 6.509 11 C 0.506 3.494 12 O -0.525 6.525 13 N -0.563 5.563 14 C 0.112 3.888 15 C 0.041 3.959 16 N -0.538 5.538 17 C 0.194 3.806 18 C -0.510 4.510 19 H 0.064 0.936 20 C 0.056 3.944 21 N -0.898 5.898 22 Si 0.899 3.101 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.276 1.276 26 C 0.052 3.948 27 C 0.056 3.944 28 C 0.079 3.921 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.027 0.973 32 H 0.342 0.658 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.160 0.840 38 H 0.063 0.937 39 H 0.080 0.920 40 H 0.091 0.909 41 H 0.084 0.916 42 H 0.027 0.973 43 H 0.032 0.968 44 H -0.009 1.009 45 H 0.262 0.738 46 H 0.022 0.978 47 H 0.098 0.902 48 H 0.075 0.925 49 H 0.147 0.853 50 H 0.072 0.928 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.592 -18.458 -18.241 26.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.313 5.313 3 C -0.037 4.037 4 H 0.101 0.899 5 C -0.148 4.148 6 C -0.167 4.167 7 C -0.074 4.074 8 N -0.310 5.310 9 C 0.296 3.704 10 O -0.386 6.386 11 C 0.290 3.710 12 O -0.406 6.406 13 N -0.294 5.294 14 C -0.010 4.010 15 C -0.088 4.088 16 N -0.263 5.263 17 C 0.069 3.931 18 C -0.549 4.549 19 H 0.082 0.918 20 C -0.146 4.146 21 N -0.538 5.538 22 Si 0.727 3.273 23 H -0.202 1.202 24 H -0.214 1.214 25 H -0.201 1.201 26 C -0.077 4.077 27 C -0.065 4.065 28 C -0.045 4.045 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.045 0.955 32 H 0.160 0.840 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.098 0.902 37 H 0.176 0.824 38 H 0.081 0.919 39 H 0.099 0.901 40 H 0.110 0.890 41 H 0.103 0.897 42 H 0.045 0.955 43 H 0.050 0.950 44 H 0.009 0.991 45 H 0.072 0.928 46 H 0.041 0.959 47 H 0.117 0.883 48 H 0.093 0.907 49 H 0.164 0.836 50 H 0.090 0.910 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.255 -18.165 -19.039 26.515 hybrid contribution -0.415 -0.026 2.065 2.107 sum 2.840 -18.191 -16.973 25.042 Atomic orbital electron populations 1.22276 0.87399 1.02112 1.00869 1.60608 1.08190 1.12810 1.49712 1.22093 0.97566 0.89479 0.94569 0.89895 1.21557 0.94738 0.96736 1.01741 1.21847 1.02101 0.95953 0.96799 1.23308 0.82227 1.09451 0.92405 1.47904 1.20633 1.07679 1.54774 1.20255 0.84520 0.85995 0.79664 1.90388 1.25128 1.84308 1.38780 1.19897 0.83736 0.85733 0.81670 1.90274 1.28765 1.82891 1.38664 1.48247 1.31270 1.08309 1.41579 1.21992 0.99482 0.81252 0.98269 1.22392 0.92697 1.00921 0.92788 1.62138 1.28621 1.14690 1.20831 1.19722 0.97167 0.93630 0.82570 1.21100 0.93529 1.38894 1.01336 0.91824 1.24992 0.96788 0.95532 0.97250 1.69947 1.27826 1.40359 1.15628 0.86546 0.83935 0.78341 0.78514 1.20229 1.21364 1.20117 1.22348 1.01357 0.88954 0.94993 1.23489 0.86402 1.07102 0.89489 1.22623 0.99791 0.83820 0.98252 0.91553 0.91199 0.95459 0.83965 0.90891 0.91769 0.91435 0.90224 0.82447 0.91851 0.90127 0.89034 0.89739 0.95479 0.95043 0.99113 0.92817 0.95942 0.88338 0.90664 0.83626 0.90981 0.88961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 10.50 60.06 0.63 0.78 16 2 N -0.68 -4.72 6.61 -113.64 -0.75 -5.47 16 3 C 0.07 0.57 2.63 -67.36 -0.18 0.40 16 4 H 0.08 0.75 7.80 -51.93 -0.41 0.35 16 5 C -0.11 -0.78 5.49 -26.69 -0.15 -0.93 16 6 C -0.13 -0.99 6.08 -26.61 -0.16 -1.16 16 7 C 0.05 0.45 6.26 -3.71 -0.02 0.42 16 8 N -0.58 -6.35 2.97 -173.01 -0.51 -6.86 16 9 C 0.51 7.00 7.66 -11.58 -0.09 6.91 16 10 O -0.51 -7.74 12.50 5.50 0.07 -7.67 16 11 C 0.51 7.41 7.65 -11.58 -0.09 7.32 16 12 O -0.53 -7.74 12.58 5.50 0.07 -7.67 16 13 N -0.56 -8.73 3.01 -172.97 -0.52 -9.25 16 14 C 0.11 1.67 6.59 -3.61 -0.02 1.65 16 15 C 0.04 0.73 5.62 -3.70 -0.02 0.71 16 16 N -0.54 -11.33 4.62 -235.76 -1.09 -12.42 16 17 C 0.19 4.97 4.72 -4.97 -0.02 4.94 16 18 C -0.51 -14.06 8.41 -34.44 -0.29 -14.35 16 19 H 0.06 1.72 7.12 -52.49 -0.37 1.35 16 20 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 21 N -0.90 -26.45 13.29 55.43 0.74 -25.71 16 22 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 C 0.05 1.02 5.46 -3.70 -0.02 1.00 16 27 C 0.06 0.91 6.35 -3.60 -0.02 0.89 16 28 C 0.08 0.72 5.69 -3.49 -0.02 0.70 16 29 H 0.07 0.44 8.06 -51.93 -0.42 0.03 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.03 0.19 7.58 -51.93 -0.39 -0.21 16 32 H 0.34 1.97 8.50 -39.29 -0.33 1.63 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.16 1.83 3.82 -56.60 -0.22 1.61 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.09 1.26 7.07 -51.93 -0.37 0.89 16 41 H 0.08 1.42 7.99 -51.93 -0.41 1.00 16 42 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.03 0.85 7.97 -51.93 -0.41 0.44 16 44 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 45 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.10 2.04 6.67 -51.93 -0.35 1.69 16 48 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 49 H 0.15 2.36 3.94 -56.45 -0.22 2.14 16 50 H 0.07 0.57 8.05 -51.93 -0.42 0.15 16 51 H 0.09 0.95 6.55 -51.93 -0.34 0.61 16 LS Contribution 389.97 15.07 5.88 5.88 Total: -1.00 -30.36 389.97 -10.17 -40.53 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -8.45 Total: 1.48 kcal Atomic # 6 Polarization: 11.32 SS G_CDS: -0.57 Total: 10.75 kcal Atomic # 7 Polarization: -57.57 SS G_CDS: -2.14 Total: -59.70 kcal Atomic # 8 Polarization: -15.48 SS G_CDS: 0.14 Total: -15.34 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -30.36 -10.17 -40.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601592186.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.711 kcal (2) G-P(sol) polarization free energy of solvation -30.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds