Wall clock time and date at job start Sat Apr 11 2020 05:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46903 * 111.00003 * 2 1 4 4 H 1.08995 * 109.52294 * 325.07790 * 3 2 1 5 5 C 1.53049 * 109.49419 * 204.99863 * 3 2 1 6 6 C 1.53036 * 109.53246 * 178.68181 * 5 3 2 7 7 C 1.53194 * 109.31538 * 61.36939 * 6 5 3 8 8 N 1.46926 * 108.77062 * 305.36022 * 7 6 5 9 9 C 1.34780 * 120.63212 * 233.58267 * 8 7 6 10 10 O 1.21349 * 120.00310 * 187.36736 * 9 8 7 11 11 C 1.49451 * 119.99653 * 7.37118 * 9 8 7 12 12 O 1.21345 * 120.00199 * 7.48454 * 11 9 8 13 13 N 1.34784 * 119.99918 * 187.47903 * 11 9 8 14 14 C 1.47077 * 120.88053 * 178.37953 * 13 11 9 15 15 C 1.53233 * 108.52055 * 231.16870 * 14 13 11 16 16 N 1.46903 * 109.33915 * 306.16763 * 15 14 13 17 17 C 1.46907 * 111.00118 * 187.25444 * 16 15 14 18 18 C 1.50697 * 109.46990 * 170.00323 * 17 16 15 19 19 H 1.07991 * 120.00285 * 0.02562 * 18 17 16 20 20 C 1.37876 * 119.99678 * 179.72487 * 18 17 16 21 21 N 1.31516 * 120.00180 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99915 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47293 * 60.00320 * 22 20 18 24 24 H 1.48506 * 109.46935 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.46863 * 300.00026 * 22 20 18 26 26 C 1.46897 * 111.26775 * 63.11090 * 16 15 14 27 27 C 1.47083 * 120.87892 * 358.36377 * 13 11 9 28 28 C 1.46924 * 118.74023 * 53.86117 * 8 7 6 29 29 H 1.09005 * 109.46681 * 60.00526 * 1 2 3 30 30 H 1.09000 * 109.46730 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47397 * 300.00067 * 1 2 3 32 32 H 1.00906 * 111.00297 * 123.95446 * 2 1 3 33 33 H 1.09000 * 109.45663 * 58.66195 * 5 3 2 34 34 H 1.08990 * 109.45884 * 298.70204 * 5 3 2 35 35 H 1.09003 * 109.50206 * 301.41268 * 6 5 3 36 36 H 1.09006 * 109.49843 * 181.31626 * 6 5 3 37 37 H 1.08999 * 109.59036 * 185.57702 * 7 6 5 38 38 H 1.08995 * 109.70772 * 65.21419 * 7 6 5 39 39 H 1.09004 * 109.62162 * 111.45827 * 14 13 11 40 40 H 1.09001 * 109.62847 * 350.88298 * 14 13 11 41 41 H 1.09005 * 109.49128 * 186.21551 * 15 14 13 42 42 H 1.08996 * 109.52206 * 66.14370 * 15 14 13 43 43 H 1.09004 * 109.46666 * 50.00139 * 17 16 15 44 44 H 1.08996 * 109.46763 * 290.00553 * 17 16 15 45 45 H 0.97001 * 120.00102 * 179.97438 * 21 20 18 46 46 H 1.08999 * 109.49567 * 56.84986 * 26 16 15 47 47 H 1.09002 * 109.49739 * 176.93302 * 26 16 15 48 48 H 1.08997 * 109.62361 * 248.54205 * 27 13 11 49 49 H 1.08995 * 109.62711 * 9.12438 * 27 13 11 50 50 H 1.09003 * 109.58754 * 65.92766 * 28 8 7 51 51 H 1.09000 * 109.58826 * 186.34785 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 1.3396 2.0134 -0.5881 5 6 3.3992 1.3797 -0.6097 6 6 3.9354 2.8127 -0.6403 7 6 4.0270 3.3501 0.7914 8 7 2.7128 3.2112 1.4335 9 6 2.1131 4.2731 2.0072 10 8 1.0945 4.1213 2.6491 11 6 2.7025 5.6378 1.8528 12 8 3.6401 5.8123 1.1024 13 7 2.1927 6.6746 2.5468 14 6 2.7800 8.0185 2.4366 15 6 3.0518 8.5482 3.8485 16 7 1.8181 8.4728 4.6423 17 6 1.9897 9.1283 5.9457 18 6 0.6511 9.2494 6.6272 19 1 -0.2381 8.8762 6.1411 20 6 0.5625 9.8309 7.8742 21 7 1.6463 10.2795 8.4691 22 14 -1.0966 9.9803 8.7194 23 1 -1.6774 8.6273 8.9125 24 1 -0.9220 10.6365 10.0401 25 1 -2.0091 10.7952 7.8779 26 6 1.3746 7.0820 4.8069 27 6 1.0340 6.4921 3.4342 28 6 2.0675 1.8912 1.4438 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8306 -0.5261 0.7814 33 1 3.3563 0.9862 -1.6253 34 1 4.0605 0.7573 -0.0070 35 1 3.2613 3.4411 -1.2223 36 1 4.9256 2.8210 -1.0959 37 1 4.3136 4.4015 0.7695 38 1 4.7690 2.7807 1.3510 39 1 2.0829 8.6818 1.9244 40 1 3.7152 7.9648 1.8792 41 1 3.3840 9.5848 3.7903 42 1 3.8261 7.9441 4.3214 43 1 2.4143 10.1216 5.7997 44 1 2.6607 8.5339 6.5657 45 1 1.5839 10.6889 9.3463 46 1 2.1721 6.4979 5.2661 47 1 0.4905 7.0551 5.4439 48 1 0.1692 7.0087 3.0180 49 1 0.8150 5.4293 3.5365 50 1 2.6526 1.2032 2.0541 51 1 1.0609 1.9798 1.8525 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601592186.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:31:08 Heat of formation + Delta-G solvation = -39.423928 kcal Electronic energy + Delta-G solvation = -30676.978414 eV Core-core repulsion = 26611.910835 eV Total energy + Delta-G solvation = -4065.067579 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.38481 -40.49169 -39.20165 -39.05270 -36.63387 -35.79582 -34.42281 -33.47127 -32.25455 -30.88273 -30.22492 -28.13000 -26.91332 -26.00496 -25.02843 -24.51208 -23.39597 -23.34898 -22.12468 -21.12344 -20.28620 -18.53531 -18.32794 -18.27364 -17.53689 -17.25048 -16.79539 -16.66344 -16.09297 -16.03875 -15.78380 -15.72014 -15.46937 -15.37719 -15.35041 -14.96097 -14.76292 -14.49162 -14.18878 -13.97194 -13.72491 -13.66408 -13.55161 -13.10578 -13.02334 -12.88290 -12.76470 -12.56892 -12.40655 -12.37768 -12.29757 -12.18733 -11.96421 -11.92071 -11.59025 -11.33150 -11.08934 -10.62399 -10.24741 -9.95719 -9.90386 -9.38119 -9.10801 -8.21803 -6.32017 0.16348 1.09442 1.41587 1.44469 1.52292 1.94844 2.18183 2.39855 2.92312 3.10408 3.18623 3.22358 3.70668 3.76200 3.87942 3.97950 4.04928 4.09029 4.17820 4.21602 4.27030 4.34887 4.38216 4.49650 4.53726 4.58879 4.62886 4.67541 4.74445 4.83084 4.88284 4.89399 4.93561 4.96958 5.03463 5.04922 5.15130 5.16127 5.24253 5.28948 5.36881 5.45728 5.61901 5.82562 5.93238 6.00983 6.10034 6.25496 6.38066 6.52467 6.55088 6.77036 6.83034 7.37722 8.89191 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.018898 B = 0.002455 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.306070 B =11402.597144 C =12504.719601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.683 5.683 3 C 0.081 3.919 4 H 0.069 0.931 5 C -0.103 4.103 6 C -0.122 4.122 7 C 0.045 3.955 8 N -0.568 5.568 9 C 0.506 3.494 10 O -0.530 6.530 11 C 0.508 3.492 12 O -0.525 6.525 13 N -0.573 5.573 14 C 0.122 3.878 15 C 0.041 3.959 16 N -0.541 5.541 17 C 0.209 3.791 18 C -0.525 4.525 19 H 0.066 0.934 20 C 0.002 3.998 21 N -0.934 5.934 22 Si 0.969 3.031 23 H -0.267 1.267 24 H -0.284 1.284 25 H -0.267 1.267 26 C 0.056 3.944 27 C 0.073 3.927 28 C 0.079 3.921 29 H 0.061 0.939 30 H 0.082 0.918 31 H 0.021 0.979 32 H 0.351 0.649 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.056 0.944 36 H 0.098 0.902 37 H 0.142 0.858 38 H 0.079 0.921 39 H 0.091 0.909 40 H 0.109 0.891 41 H 0.090 0.910 42 H 0.019 0.981 43 H 0.010 0.990 44 H -0.041 1.041 45 H 0.265 0.735 46 H 0.011 0.989 47 H 0.081 0.919 48 H 0.079 0.921 49 H 0.154 0.846 50 H 0.089 0.911 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.294 -20.123 -19.720 28.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.313 5.313 3 C -0.030 4.030 4 H 0.087 0.913 5 C -0.141 4.141 6 C -0.161 4.161 7 C -0.075 4.075 8 N -0.300 5.300 9 C 0.290 3.710 10 O -0.409 6.409 11 C 0.292 3.708 12 O -0.405 6.405 13 N -0.304 5.304 14 C 0.000 4.000 15 C -0.088 4.088 16 N -0.266 5.266 17 C 0.083 3.917 18 C -0.563 4.563 19 H 0.084 0.916 20 C -0.196 4.196 21 N -0.575 5.575 22 Si 0.794 3.206 23 H -0.192 1.192 24 H -0.210 1.210 25 H -0.192 1.192 26 C -0.073 4.073 27 C -0.048 4.048 28 C -0.044 4.044 29 H 0.080 0.920 30 H 0.101 0.899 31 H 0.039 0.961 32 H 0.170 0.830 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.075 0.925 36 H 0.116 0.884 37 H 0.158 0.842 38 H 0.097 0.903 39 H 0.109 0.891 40 H 0.127 0.873 41 H 0.109 0.891 42 H 0.037 0.963 43 H 0.028 0.972 44 H -0.023 1.023 45 H 0.073 0.927 46 H 0.029 0.971 47 H 0.100 0.900 48 H 0.097 0.903 49 H 0.170 0.830 50 H 0.107 0.893 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.987 -19.871 -20.571 28.757 hybrid contribution -0.217 0.414 2.454 2.498 sum 2.771 -19.457 -18.117 26.730 Atomic orbital electron populations 1.22293 0.87172 1.02821 1.00365 1.60639 1.08447 1.12099 1.50117 1.21997 0.97931 0.89702 0.93340 0.91307 1.21514 0.94180 0.96352 1.02103 1.21810 1.02956 0.96037 0.95257 1.23334 0.81678 1.08739 0.93797 1.48036 1.20846 1.07716 1.53413 1.20119 0.84527 0.86184 0.80177 1.90357 1.26069 1.84422 1.40094 1.20104 0.83475 0.85963 0.81293 1.90313 1.28550 1.83167 1.38437 1.48265 1.31317 1.08799 1.42029 1.21923 1.00606 0.81230 0.96243 1.22480 0.90989 1.01504 0.93808 1.62066 1.30512 1.15551 1.18487 1.19375 0.95711 0.92357 0.84283 1.21422 0.94216 1.38788 1.01864 0.91625 1.25913 1.00700 0.95012 0.97980 1.70078 1.30165 1.41159 1.16075 0.85438 0.79154 0.78725 0.77328 1.19238 1.20957 1.19205 1.22309 1.00076 0.87955 0.96911 1.23290 0.86757 1.07121 0.87652 1.22786 0.99215 0.82941 0.99495 0.91989 0.89897 0.96065 0.83015 0.90460 0.90699 0.92527 0.88408 0.84164 0.90259 0.89132 0.87332 0.89146 0.96287 0.97234 1.02313 0.92668 0.97103 0.90039 0.90315 0.83029 0.89311 0.90278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 10.50 127.69 1.34 1.60 16 2 N -0.68 -8.04 6.61 -513.44 -3.39 -11.43 16 3 C 0.08 1.12 2.63 45.14 0.12 1.24 16 4 H 0.07 1.16 7.80 -2.39 -0.02 1.15 16 5 C -0.10 -1.19 5.49 30.62 0.17 -1.03 16 6 C -0.12 -1.60 6.08 30.67 0.19 -1.41 16 7 C 0.04 0.76 6.26 86.36 0.54 1.30 16 8 N -0.57 -11.68 2.97 -819.65 -2.43 -14.11 16 9 C 0.51 13.44 7.66 87.27 0.67 14.11 16 10 O -0.53 -15.88 12.50 -3.24 -0.04 -15.92 16 11 C 0.51 14.35 7.65 87.27 0.67 15.02 16 12 O -0.52 -14.73 12.58 -3.23 -0.04 -14.77 16 13 N -0.57 -17.31 3.01 -819.52 -2.47 -19.78 16 14 C 0.12 3.51 6.59 86.35 0.57 4.08 16 15 C 0.04 1.45 5.62 86.38 0.49 1.94 16 16 N -0.54 -23.33 4.62 -899.81 -4.16 -27.49 16 17 C 0.21 11.13 4.72 85.55 0.40 11.53 16 18 C -0.52 -29.55 8.41 25.60 0.22 -29.33 16 19 H 0.07 3.60 7.12 -2.92 -0.02 3.57 16 20 C 0.00 0.12 5.46 84.65 0.46 0.58 16 21 N -0.93 -56.20 13.29 21.45 0.28 -55.92 16 22 Si 0.97 44.11 29.54 68.60 2.03 46.13 16 23 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 24 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 25 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 26 C 0.06 2.24 5.46 86.38 0.47 2.71 16 27 C 0.07 2.36 6.35 86.35 0.55 2.91 16 28 C 0.08 1.30 5.69 86.51 0.49 1.79 16 29 H 0.06 0.76 8.06 -2.38 -0.02 0.74 16 30 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.02 0.27 7.58 -2.39 -0.02 0.25 16 32 H 0.35 3.19 8.50 -89.69 -0.76 2.43 16 33 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.06 0.88 8.14 -2.39 -0.02 0.87 16 36 H 0.10 0.97 8.14 -2.38 -0.02 0.95 16 37 H 0.14 3.02 3.82 -76.36 -0.29 2.73 16 38 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 40 H 0.11 2.79 7.07 -2.39 -0.02 2.78 16 41 H 0.09 3.06 7.99 -2.38 -0.02 3.04 16 42 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.01 0.54 7.97 -2.38 -0.02 0.52 16 44 H -0.04 -2.39 8.12 -2.39 -0.02 -2.41 16 45 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 46 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 47 H 0.08 3.48 6.67 -2.39 -0.02 3.46 16 48 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 49 H 0.15 4.89 3.94 -73.97 -0.29 4.60 16 50 H 0.09 1.19 8.05 -2.39 -0.02 1.17 16 51 H 0.08 1.55 6.55 -2.39 -0.02 1.54 16 Total: -1.00 -65.87 389.97 -3.27 -69.14 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: -0.39 Total: 17.10 kcal Atomic # 6 Polarization: 19.70 SS G_CDS: 7.34 Total: 27.04 kcal Atomic # 7 Polarization: -116.56 SS G_CDS: -12.16 Total: -128.73 kcal Atomic # 8 Polarization: -30.60 SS G_CDS: -0.08 Total: -30.69 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.13 kcal Total: -65.87 -3.27 -69.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601592186.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.716 kcal (2) G-P(sol) polarization free energy of solvation -65.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds