Wall clock time and date at job start Sat Apr 11 2020 05:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 114.00123 * 2 1 4 4 C 1.53007 * 109.47118 * 184.39155 * 3 2 1 5 5 N 1.46896 * 109.46847 * 68.81436 * 4 3 2 6 6 C 1.46894 * 111.00400 * 286.44567 * 5 4 3 7 7 C 1.50704 * 109.46879 * 290.31232 * 6 5 4 8 8 H 1.07994 * 120.00168 * 355.33294 * 7 6 5 9 9 C 1.37885 * 119.99877 * 175.33321 * 7 6 5 10 10 N 1.31512 * 119.99783 * 2.51296 * 9 7 6 11 11 Si 1.86792 * 119.99873 * 182.50856 * 9 7 6 12 12 H 1.48506 * 109.46843 * 65.00217 * 11 9 7 13 13 H 1.48506 * 109.47313 * 184.99653 * 11 9 7 14 14 H 1.48500 * 109.47458 * 304.99961 * 11 9 7 15 15 C 1.38586 * 110.99808 * 162.48664 * 5 4 3 16 16 N 1.31217 * 126.47166 * 17.87994 * 15 5 4 17 17 N 1.28521 * 109.86191 * 179.97438 * 16 15 5 18 18 C 1.30294 * 110.05527 * 0.02562 * 17 16 15 19 19 C 1.50699 * 126.35060 * 179.97438 * 18 17 16 20 20 C 1.53784 * 113.61517 * 320.88721 * 19 18 17 21 21 C 1.54046 * 86.98255 * 140.01999 * 20 19 18 22 22 C 1.53774 * 87.08234 * 334.56880 * 21 20 19 23 23 N 1.36454 * 126.47435 * 198.15812 * 15 5 4 24 24 C 1.46496 * 127.13591 * 0.02562 * 23 15 5 25 25 C 1.53005 * 109.46638 * 262.72309 * 24 23 15 26 26 O 1.42901 * 109.46748 * 174.88670 * 25 24 23 27 27 C 1.42909 * 113.99907 * 180.02562 * 26 25 24 28 28 H 1.08994 * 109.47010 * 64.82871 * 1 2 3 29 29 H 1.08993 * 109.47212 * 184.82927 * 1 2 3 30 30 H 1.08999 * 109.46923 * 304.83509 * 1 2 3 31 31 H 1.09000 * 109.47102 * 64.39544 * 3 2 1 32 32 H 1.09001 * 109.47331 * 304.39093 * 3 2 1 33 33 H 1.08998 * 109.46841 * 308.81750 * 4 3 2 34 34 H 1.08999 * 109.46861 * 188.81905 * 4 3 2 35 35 H 1.09000 * 109.47477 * 50.31090 * 6 5 4 36 36 H 1.09001 * 109.47257 * 170.31348 * 6 5 4 37 37 H 0.97003 * 120.00042 * 179.97438 * 10 9 7 38 38 H 1.09000 * 112.85184 * 189.69133 * 19 18 17 39 39 H 1.09000 * 113.61296 * 254.61656 * 20 19 18 40 40 H 1.08999 * 113.60765 * 25.51520 * 20 19 18 41 41 H 1.09008 * 113.61576 * 220.02244 * 21 20 19 42 42 H 1.08995 * 113.69507 * 89.13196 * 21 20 19 43 43 H 1.09006 * 113.61685 * 270.88347 * 22 21 20 44 44 H 1.09003 * 113.61777 * 139.98210 * 22 21 20 45 45 H 1.08997 * 109.47262 * 22.72341 * 24 23 15 46 46 H 1.09000 * 109.47177 * 142.73057 * 24 23 15 47 47 H 1.08989 * 109.47552 * 294.88812 * 25 24 23 48 48 H 1.09005 * 109.46755 * 54.89425 * 25 24 23 49 49 H 1.09006 * 109.46596 * 300.00249 * 27 26 25 50 50 H 1.08997 * 109.47224 * 59.99847 * 27 26 25 51 51 H 1.09001 * 109.47141 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5317 1.1864 -0.1105 5 7 3.8882 0.6897 -1.4462 6 6 3.5751 -0.7395 -1.5774 7 6 4.5191 -1.5413 -0.7188 8 1 5.3231 -1.0474 -0.1935 9 6 4.3564 -2.9057 -0.6040 10 7 3.4082 -3.5142 -1.2825 11 14 5.4827 -3.8898 0.5149 12 1 5.2635 -3.4773 1.9246 13 1 5.1829 -5.3370 0.3704 14 1 6.8972 -3.6374 0.1395 15 6 5.2233 0.9335 -1.7266 16 7 6.1642 1.2153 -0.8566 17 7 7.2848 1.3811 -1.4636 18 6 7.1266 1.2169 -2.7465 19 6 8.1985 1.3274 -3.8000 20 6 9.1968 2.4692 -3.5458 21 6 10.2976 1.5043 -4.0255 22 6 9.3721 0.3564 -3.5890 23 7 5.8066 0.9311 -2.9602 24 6 5.1545 0.6730 -4.2464 25 6 5.3702 -0.7889 -4.6431 26 8 4.6358 -1.0719 -5.8359 27 6 4.7691 -2.4188 -6.2946 28 1 -0.3633 0.4371 -0.9300 29 1 -0.3633 -1.0239 0.0865 30 1 -0.3633 0.5870 0.8435 31 1 1.7523 1.8180 0.9267 32 1 1.6278 1.8735 -0.8480 33 1 3.8975 0.4912 0.6452 34 1 3.9850 2.1651 0.0463 35 1 2.5495 -0.9180 -1.2542 36 1 3.6857 -1.0416 -2.6188 37 1 3.2939 -4.4741 -1.2020 38 1 7.7983 1.3149 -4.8139 39 1 9.0524 3.3291 -4.1999 40 1 9.2857 2.7455 -2.4952 41 1 11.2178 1.5682 -3.4446 42 1 10.4726 1.5392 -5.1008 43 1 9.5090 0.0561 -2.5501 44 1 9.3693 -0.4883 -4.2779 45 1 4.0864 0.8719 -4.1586 46 1 5.5838 1.3234 -5.0084 47 1 6.4312 -0.9648 -4.8194 48 1 5.0226 -1.4384 -3.8397 49 1 5.8178 -2.6289 -6.5050 50 1 4.4089 -3.1019 -5.5255 51 1 4.1826 -2.5528 -7.2036 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812159801.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:31:38 Heat of formation + Delta-G solvation = 25.420236 kcal Electronic energy + Delta-G solvation = -31962.397118 eV Core-core repulsion = 27900.141393 eV Total energy + Delta-G solvation = -4062.255725 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.33420 -38.53759 -37.85839 -37.76103 -36.05097 -34.61269 -32.53263 -30.06073 -29.55184 -28.86951 -26.78724 -26.11738 -25.61128 -25.55443 -25.25626 -23.18061 -22.74279 -22.04598 -20.59846 -19.72038 -18.80443 -17.26380 -16.58382 -16.24730 -16.03500 -15.86898 -15.69349 -15.58270 -15.07556 -14.90103 -14.87508 -14.35531 -14.33483 -14.20403 -13.50586 -13.34680 -12.71213 -12.56528 -12.34925 -12.27409 -12.06318 -11.76191 -11.66411 -11.45497 -11.28847 -11.17958 -11.11572 -10.93822 -10.92445 -10.79723 -10.69894 -10.44637 -10.41339 -10.27793 -10.04107 -9.84314 -9.60412 -9.46721 -9.42054 -9.05320 -8.61178 -8.35325 -7.37245 -6.03898 -4.07832 2.38456 2.79958 3.32812 3.35326 3.42585 3.58227 3.97079 4.34518 4.44852 4.55915 4.65894 4.72168 4.75056 4.90725 4.97830 5.03996 5.18924 5.31264 5.40939 5.46806 5.50133 5.53132 5.61342 5.67549 5.70138 5.74836 5.77634 5.82076 5.83457 5.87887 5.89108 5.91940 5.98918 5.99659 6.04890 6.07463 6.11518 6.19290 6.40005 6.61992 6.68793 6.75072 7.09126 7.24403 7.37463 7.62168 7.67175 7.74834 7.92426 8.19545 8.28385 9.01026 9.51596 9.57599 11.02974 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.008813 B = 0.004650 C = 0.004434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3176.365675 B = 6020.581864 C = 6313.017877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.360 6.360 3 C 0.068 3.932 4 C 0.077 3.923 5 N -0.468 5.468 6 C 0.179 3.821 7 C -0.545 4.545 8 H 0.065 0.935 9 C 0.072 3.928 10 N -0.889 5.889 11 Si 0.885 3.115 12 H -0.275 1.275 13 H -0.288 1.288 14 H -0.279 1.279 15 C 0.415 3.585 16 N -0.335 5.335 17 N -0.283 5.283 18 C 0.163 3.837 19 C -0.024 4.024 20 C -0.120 4.120 21 C -0.141 4.141 22 C -0.124 4.124 23 N -0.473 5.473 24 C 0.123 3.877 25 C 0.042 3.958 26 O -0.390 6.390 27 C 0.035 3.965 28 H 0.034 0.966 29 H 0.081 0.919 30 H 0.031 0.969 31 H 0.048 0.952 32 H 0.049 0.951 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.026 0.974 37 H 0.261 0.739 38 H 0.099 0.901 39 H 0.067 0.933 40 H 0.095 0.905 41 H 0.071 0.929 42 H 0.079 0.921 43 H 0.092 0.908 44 H 0.067 0.933 45 H 0.108 0.892 46 H 0.090 0.910 47 H 0.048 0.952 48 H 0.083 0.917 49 H 0.037 0.963 50 H 0.050 0.950 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.661 8.588 -8.709 12.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.278 6.278 3 C -0.009 4.009 4 C -0.051 4.051 5 N -0.193 5.193 6 C 0.056 3.944 7 C -0.584 4.584 8 H 0.083 0.917 9 C -0.131 4.131 10 N -0.527 5.527 11 Si 0.713 3.287 12 H -0.201 1.201 13 H -0.214 1.214 14 H -0.204 1.204 15 C 0.059 3.941 16 N -0.179 5.179 17 N -0.122 5.122 18 C -0.104 4.104 19 C -0.045 4.045 20 C -0.159 4.159 21 C -0.178 4.178 22 C -0.163 4.163 23 N -0.169 5.169 24 C -0.002 4.002 25 C -0.035 4.035 26 O -0.308 6.308 27 C -0.061 4.061 28 H 0.053 0.947 29 H 0.100 0.900 30 H 0.049 0.951 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.105 0.895 36 H 0.044 0.956 37 H 0.070 0.930 38 H 0.117 0.883 39 H 0.085 0.915 40 H 0.114 0.886 41 H 0.089 0.911 42 H 0.097 0.903 43 H 0.110 0.890 44 H 0.086 0.914 45 H 0.126 0.874 46 H 0.108 0.892 47 H 0.067 0.933 48 H 0.101 0.899 49 H 0.056 0.944 50 H 0.069 0.931 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.893 8.891 -7.848 12.207 hybrid contribution 0.145 -1.571 -0.050 1.579 sum 3.039 7.320 -7.899 11.190 Atomic orbital electron populations 1.22658 0.82799 1.02245 0.98840 1.88246 1.18118 1.26659 1.94792 1.22524 0.93835 0.85401 0.99145 1.21913 0.92997 1.00590 0.89614 1.59436 1.08330 1.22858 1.28646 1.20445 1.00233 0.76643 0.97102 1.21757 1.14002 0.92975 1.29662 0.91663 1.24820 0.95193 0.97642 0.95443 1.69937 1.32027 1.09700 1.41075 0.86749 0.81257 0.78729 0.81920 1.20089 1.21368 1.20410 1.22591 0.92237 0.98122 0.81178 1.74648 0.94670 1.24467 1.24131 1.73726 1.18337 1.18236 1.01925 1.24217 0.83404 1.07157 0.95668 1.20880 0.89781 0.99390 0.94411 1.22975 0.94239 0.95742 1.02917 1.22844 0.97574 0.96589 1.00834 1.22959 0.94024 0.96367 1.02914 1.45856 1.08810 1.54887 1.07334 1.21365 1.00366 0.95986 0.82443 1.22938 0.95489 0.96476 0.88645 1.87716 1.71325 1.29378 1.42415 1.22731 1.00400 0.83240 0.99761 0.94728 0.90045 0.95071 0.93362 0.93315 0.90670 0.90323 0.89459 0.95601 0.92971 0.88282 0.91453 0.88598 0.91071 0.90282 0.88977 0.91435 0.87420 0.89215 0.93340 0.89936 0.94422 0.93109 0.89717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.58 16 2 O -0.36 -7.06 7.75 -35.23 -0.27 -7.33 16 3 C 0.07 1.16 6.21 37.16 0.23 1.39 16 4 C 0.08 1.52 4.91 -3.82 -0.02 1.50 16 5 N -0.47 -10.07 4.63 -175.88 -0.81 -10.88 16 6 C 0.18 4.43 4.99 -4.98 -0.02 4.40 16 7 C -0.54 -15.03 7.53 -34.44 -0.26 -15.29 16 8 H 0.07 1.91 6.42 -52.49 -0.34 1.57 16 9 C 0.07 2.01 5.46 -17.82 -0.10 1.91 16 10 N -0.89 -25.40 13.29 55.43 0.74 -24.66 16 11 Si 0.89 22.31 29.54 -169.99 -5.02 17.29 16 12 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 13 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 14 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 15 C 0.41 9.01 5.57 -318.86 -1.78 7.24 16 16 N -0.34 -7.74 10.71 30.32 0.32 -7.42 16 17 N -0.28 -6.02 11.83 32.99 0.39 -5.63 16 18 C 0.16 2.96 7.11 -154.01 -1.09 1.87 16 19 C -0.02 -0.32 4.08 -90.96 -0.37 -0.69 16 20 C -0.12 -1.40 7.64 -25.78 -0.20 -1.59 16 21 C -0.14 -1.42 8.09 -25.78 -0.21 -1.62 16 22 C -0.12 -1.57 7.63 -25.92 -0.20 -1.77 16 23 N -0.47 -8.94 2.81 -114.08 -0.32 -9.26 16 24 C 0.12 1.96 5.86 -4.04 -0.02 1.94 16 25 C 0.04 0.71 6.08 37.16 0.23 0.94 16 26 O -0.39 -6.23 10.70 -35.23 -0.38 -6.60 16 27 C 0.04 0.47 11.01 101.05 1.11 1.59 16 28 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.08 1.72 6.98 -51.93 -0.36 1.36 16 34 H 0.08 1.45 7.75 -51.93 -0.40 1.05 16 35 H 0.09 2.31 5.03 -51.93 -0.26 2.05 16 36 H 0.03 0.68 5.57 -51.93 -0.29 0.39 16 37 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 38 H 0.10 1.15 7.37 -51.93 -0.38 0.77 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.10 1.28 7.81 -51.93 -0.41 0.87 16 41 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 42 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.09 1.37 8.09 -51.93 -0.42 0.95 16 44 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.11 1.79 8.07 -51.93 -0.42 1.37 16 46 H 0.09 1.16 7.57 -51.93 -0.39 0.77 16 47 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.08 1.75 6.23 -51.93 -0.32 1.43 16 49 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 50 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 51 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 406.79 15.07 6.13 6.13 Total: -1.00 -32.41 406.79 -9.44 -41.84 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -8.63 Total: 3.15 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: -1.59 Total: 3.38 kcal Atomic # 7 Polarization: -58.17 SS G_CDS: 0.32 Total: -57.86 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: -0.65 Total: -13.94 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -32.41 -9.44 -41.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812159801.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.264 kcal (2) G-P(sol) polarization free energy of solvation -32.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds